Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:55:18 (302985): wrapper (7.7.26015): starting
06:55:18 (302985): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 06:55:18] Arguments: --nthreads 8
[2026-04-21 06:55:18] Threads: 8
[2026-04-21 06:55:18] Checking for CVMFS
[2026-04-21 06:55:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 06:55:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 06:55:19] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 06:55:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 06:55:20] 2.13.3.0 9597 169445 199136 158687 2 694 34621642 40960001 37201 16776704 0 1376199850 99.725 1007791163 45380 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-21 06:55:20] CVMFS is ok
[2026-04-21 06:55:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 06:55:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 06:55:20] Further information can be found at the LHC@home message board.
[2026-04-21 06:55:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 06:55:20] Checking for apptainer binary...
[2026-04-21 06:55:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 06:55:20] Running /usr/bin/apptainer --version
[2026-04-21 06:55:20] apptainer version 1.4.5-2.el9
[2026-04-21 06:55:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 06:55:21] c-208-38.aglt2.org
[2026-04-21 06:55:21] apptainer works
[2026-04-21 06:55:21] Set ATHENA_PROC_NUMBER=8
[2026-04-21 06:55:21] Set ATHENA_CORE_NUMBER=8
[2026-04-21 06:55:21] Starting ATLAS job with PandaID=7104802285
[2026-04-21 06:55:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 09:03:43]  *** The last 200 lines of the pilot log: ***
[2026-04-21 09:03:43] 2026-04-21 13:02:51,667 | INFO     | extracted standard info from prmon json
[2026-04-21 09:03:43] 2026-04-21 13:02:51,667 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 09:03:43] 2026-04-21 13:02:51,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 09:03:43] 2026-04-21 13:02:51,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 09:03:43] 2026-04-21 13:02:51,674 | INFO     | fitting pss+swap vs Time
[2026-04-21 09:03:43] 2026-04-21 13:02:51,674 | INFO     | sum of square deviations: 591169178.9919349
[2026-04-21 09:03:43] 2026-04-21 13:02:51,674 | INFO     | sum of deviations: 86898820376.32263
[2026-04-21 09:03:43] 2026-04-21 13:02:51,674 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,674 | INFO     | mean y: 2339177.6774193547
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | intersect: 2339177.6774193547
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | chi2: 8.412134700749824
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | sum of square deviations: 522498428.9915964
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | sum of deviations: 90549251355.89076
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | mean y: 2346692.1092436975
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | intersect: 2346692.1092436975
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | chi2: 7.7052758275378785
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | current chi2=7.7052758275378785 (change=8.402847771195809 %)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,675 | INFO     | right removable region: 118
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | sum of square deviations: 522497818.9915964
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | sum of deviations: 48755248541.12606
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | mean y: 2423803.87394958
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | intersect: 2423803.87394958
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | chi2: 4.120664114157743
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | current chi2=4.120664114157743 (change=51.01523857207798 %)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,676 | INFO     | sum of square deviations: 459361446.4912284
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | sum of deviations: 16833161160.122814
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | mean y: 2500809.3771929825
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | intersect: 2500809.3771929825
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | chi2: 1.3942657840024575
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | current chi2=1.3942657840024575 (change=66.16405158547015 %)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | sum of square deviations: 401527498.990825
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | sum of deviations: 2157084252.550457
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | mean y: 2539130.4495412842
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | intersect: 2539130.4495412842
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | chi2: 0.7798790312514298
[2026-04-21 09:03:43] 2026-04-21 13:02:51,677 | INFO     | current chi2=0.7798790312514298 (change=44.06525354063661 %)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | sum of square deviations: 348763413.9903839
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | sum of deviations: -1650837813.7499905
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | mean y: 2550043.75
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | intersect: 2550043.75
[2026-04-21 09:03:43] 2026-04-21 13:02:51,678 | INFO     | chi2: 0.7406260127465781
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | current chi2=0.7406260127465781 (change=5.033218862400292 %)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | left removable region: 20
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | sum of square deviations: 291812014.48979646
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | sum of deviations: 4704994265.755104
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | mean x (centered): 0.0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | mean y: 2569410.2448979593
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | intersect: 2569410.2448979593
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | chi2: 0.003121712029691596
[2026-04-21 09:03:43] 2026-04-21 13:02:51,679 | INFO     | current memory leak: 16.12 B/s (using 98 data points, chi2=0.00)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | could have reported an average CPU frequency of 3792 MHz (8 samples)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | ..............................
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . Timing measurements:
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . get job = 0 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . initial setup = 17 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . payload setup = 31 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . stage-in = 0 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . payload execution = 7539 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . stage-out = 0 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | . log creation = 0 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,680 | INFO     | ..............................
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | 
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | job summary report
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | --------------------------------------------------
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | PanDA job id: 7104802285
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | task id: 49820244
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | errors: (none)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | pilot state: finished 
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | transexitcode: 0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | exeerrorcode: 0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | exeerrordiag: 
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | exitcode: 0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | exitmsg: OK
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | cpuconsumptiontime: 39266 s
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | nevents: 400
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | neventsw: 0
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | pid: 332907
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | pgrp: 332907
[2026-04-21 09:03:43] 2026-04-21 13:02:51,796 | INFO     | corecount: 8
[2026-04-21 09:03:43] 2026-04-21 13:02:51,797 | INFO     | event service: False
[2026-04-21 09:03:43] 2026-04-21 13:02:51,797 | INFO     | sizes: {0: 2281500, 1: 2283385, 11: 2283385, 7575: 2310869, 7576: 2320061}
[2026-04-21 09:03:43] 2026-04-21 13:02:51,797 | INFO     | --------------------------------------------------
[2026-04-21 09:03:43] 2026-04-21 13:02:51,797 | INFO     | 
[2026-04-21 09:03:43] 2026-04-21 13:02:51,797 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | job 7104802285 has completed (purged errors)
[2026-04-21 09:03:43] 2026-04-21 13:02:51,819 | INFO     | overall cleanup function is called
[2026-04-21 09:03:43] 2026-04-21 13:02:52,833 | INFO     | --- collectZombieJob: --- 10, [332907]
[2026-04-21 09:03:43] 2026-04-21 13:02:52,834 | INFO     | zombie collector waiting for pid 332907
[2026-04-21 09:03:43] 2026-04-21 13:02:52,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 09:03:43] 2026-04-21 13:02:52,834 | INFO     | collected zombie processes
[2026-04-21 09:03:43] 2026-04-21 13:02:52,834 | INFO     | will attempt to kill all subprocesses of pid=332907
[2026-04-21 09:03:43] 2026-04-21 13:02:53,240 | INFO     | process IDs to be killed: [332907] (in reverse order)
[2026-04-21 09:03:43] 2026-04-21 13:02:53,412 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 09:03:43] 2026-04-21 13:02:53,413 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 09:03:43] 2026-04-21 13:02:53,432 | INFO     | did not find any defunct processes belonging to 332907
[2026-04-21 09:03:43] 2026-04-21 13:02:53,451 | INFO     | did not find any defunct processes belonging to 332907
[2026-04-21 09:03:43] 2026-04-21 13:02:53,451 | INFO     | Ready for new job
[2026-04-21 09:03:43] 2026-04-21 13:02:53,452 | INFO     | **************************************
[2026-04-21 09:03:43] 2026-04-21 13:02:53,452 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 09:03:43] 2026-04-21 13:02:53,452 | INFO     | **************************************
[2026-04-21 09:03:43] 2026-04-21 13:02:53,452 | INFO     | 
[2026-04-21 09:03:43] 2026-04-21 13:02:53,456 | INFO     | architecture information:
[2026-04-21 09:03:43] 2026-04-21 13:02:53,456 | INFO     | executing command: cat /etc/os-release
[2026-04-21 09:03:43] 2026-04-21 13:02:53,476 | INFO     | cat /etc/os-release:
[2026-04-21 09:03:43] NAME="CentOS Linux"
[2026-04-21 09:03:43] VERSION="7 (Core)"
[2026-04-21 09:03:43] ID="centos"
[2026-04-21 09:03:43] ID_LIKE="rhel fedora"
[2026-04-21 09:03:43] VERSION_ID="7"
[2026-04-21 09:03:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 09:03:43] ANSI_COLOR="0;31"
[2026-04-21 09:03:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 09:03:43] HOME_URL="https://www.centos.org/"
[2026-04-21 09:03:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 09:03:43] 
[2026-04-21 09:03:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 09:03:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 09:03:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 09:03:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 09:03:43] 
[2026-04-21 09:03:43] 2026-04-21 13:02:53,476 | INFO     | **************************************
[2026-04-21 09:03:43] 2026-04-21 13:02:53,980 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-04-21 09:03:43] 2026-04-21 13:02:54,004 | INFO     | sufficient remaining disk space (169574662144 B)
[2026-04-21 09:03:43] 2026-04-21 13:02:54,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 09:03:43] 2026-04-21 13:02:54,004 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 09:03:43] 2026-04-21 13:02:54,004 | INFO     | update_server=False
[2026-04-21 09:03:43] 2026-04-21 13:02:54,005 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 09:03:43] 2026-04-21 13:02:54,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 09:03:43] 2026-04-21 13:02:54,005 | INFO     | aborting loop
[2026-04-21 09:03:43] 2026-04-21 13:02:54,392 | INFO     | all payload control threads have been joined
[2026-04-21 09:03:43] 2026-04-21 13:02:54,409 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 09:03:43] 2026-04-21 13:02:54,534 | INFO     | all data control threads have been joined
[2026-04-21 09:03:43] 2026-04-21 13:02:54,603 | INFO     | all job control threads have been joined
[2026-04-21 09:03:43] 2026-04-21 13:02:55,010 | INFO     | [job] retrieve thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,012 | INFO     | [job] job monitor thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,091 | INFO     | [payload] failed_post thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,297 | INFO     | [data] copytool_in thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,298 | INFO     | [job] validate thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,398 | INFO     | [payload] control thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,541 | INFO     | [data] control thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,608 | INFO     | [job] control thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:55,986 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,252 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,260 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,342 | INFO     | [payload] validate_post thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,389 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,414 | INFO     | [data] copytool_out thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:02:56,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 09:03:43] 2026-04-21 13:02:57,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 09:03:43] 2026-04-21 13:02:57,753 | INFO     | [job] queue monitor thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:03:01,470 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 09:03:43] 2026-04-21 13:03:24,168 | INFO     | PID=318111 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-21 09:03:43] 2026-04-21 13:03:24,169 | INFO     | .. there are 22 such processes running
[2026-04-21 09:03:43] 2026-04-21 13:03:24,169 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 09:03:43] 2026-04-21 13:03:24,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 09:03:43] 2026-04-21 13:03:24,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 09:03:43] 2026-04-21 13:03:37,078 | INFO     | [monitor] cgroup control has ended
[2026-04-21 09:03:43] 2026-04-21 13:03:37,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631712556864)>', '<ExcThread(monitor, started 139631173551872)>']
[2026-04-21 09:03:43] 2026-04-21 13:03:37,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 09:03:43] 2026-04-21 13:03:37,237 | INFO     | [monitor] control thread has ended
[2026-04-21 09:03:43] 2026-04-21 13:03:42,147 | INFO     | all workflow threads have been joined
[2026-04-21 09:03:43] 2026-04-21 13:03:42,147 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 09:03:43] 2026-04-21 13:03:42,147 | INFO     | traces error code: 0
[2026-04-21 09:03:43] 2026-04-21 13:03:42,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 09:03:43] 2026-04-21 13:03:42,601 [wrapper] ==== pilot stdout END ====
[2026-04-21 09:03:43] 2026-04-21 13:03:42,628 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 09:03:43] 2026-04-21 13:03:42,630 [wrapper] pilotpid: 318111
[2026-04-21 09:03:43] 2026-04-21 13:03:42,633 [wrapper] Pilot exit status: 0
[2026-04-21 09:03:43] 2026-04-21 13:03:42,768 [wrapper] pandaids: 7104802285
[2026-04-21 09:03:43] 2026-04-21 13:03:42,913 [wrapper] cleanup supervisor_pilot 1953994 318112
[2026-04-21 09:03:43] 2026-04-21 13:03:42,920 [wrapper] Test setup, not cleaning
[2026-04-21 09:03:43] 2026-04-21 13:03:42,922 [wrapper] apfmon messages muted
[2026-04-21 09:03:43] 2026-04-21 13:03:42,925 [wrapper] ==== wrapper stdout END ====
[2026-04-21 09:03:43] 2026-04-21 13:03:42,928 [wrapper] ==== wrapper stderr END ====
[2026-04-21 09:03:43]  *** Error codes and diagnostics ***
[2026-04-21 09:03:43]     "exeErrorCode": 0,
[2026-04-21 09:03:43]     "pilotErrorCode": 0,
[2026-04-21 09:03:43]  *** Listing of results directory ***
[2026-04-21 09:03:43] total 2452560
[2026-04-21 09:03:43] -rwx------. 1 boincer umatlas      36322 Apr 21 03:56 runpilot2-wrapper.sh
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 05:10 pilot3.tar.gz
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:22 queuedata.json
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas        100 Apr 21 06:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 09:03:43] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 06:54 run_atlas
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas        105 Apr 21 06:54 job.xml
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas 2228643700 Apr 21 06:55 EVNT.49820242._000019.pool.root.1
[2026-04-21 09:03:43] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 06:55 shared
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas     656923 Apr 21 06:55 input.tar.gz
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 06:55 start_atlas.sh
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas          0 Apr 21 06:55 boinc_lockfile
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 06:55 pandaJob.out
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas         57 Apr 21 06:55 setup.sh.local
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas     995858 Apr 21 06:56 agis_schedconf.cvmfs.json
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas    1512404 Apr 21 06:56 agis_ddmendpoints.agis.ALL.json
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas        432 Apr 21 06:56 workernode_map.json
[2026-04-21 09:03:43] drwx------. 5 boincer umatlas       4096 Apr 21 06:56 pilot3
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas       7100 Apr 21 09:01 init_data.xml
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas  276393643 Apr 21 09:01 HITS.49820244._012023.pool.root.1
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas        488 Apr 21 09:02 boinc_task_state.xml
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas         95 Apr 21 09:02 pilot_heartbeat.json
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas       1078 Apr 21 09:02 memory_monitor_summary.json
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas     440924 Apr 21 09:02 log.49820244._012023.job.log.tgz.1
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas       6384 Apr 21 09:02 heartbeat_new.json
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas       6275 Apr 21 09:02 heartbeat.json
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas         27 Apr 21 09:03 wrapper_checkpoint.txt
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 09:03 boinc_mmap_file
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas       4819 Apr 21 09:03 pilotlog.txt
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas     720881 Apr 21 09:03 log.49820244._012023.job.log.1
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas        357 Apr 21 09:03 output.list
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas        410 Apr 21 09:03 runtime_log
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas    1177600 Apr 21 09:03 result.tar.gz
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas       8963 Apr 21 09:03 runtime_log.err
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas        658 Apr 21 09:03 2dacd403148c.diag
[2026-04-21 09:03:43] -rw-r--r--. 1 boincer umatlas      20788 Apr 21 09:03 stderr.txt
[2026-04-21 09:03:43] HITS file was successfully produced:
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas 276393643 Apr 21 09:01 shared/HITS.pool.root.1
[2026-04-21 09:03:43]  *** Contents of shared directory: ***
[2026-04-21 09:03:43] total 2448148
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas 2228643700 Apr 21 06:55 ATLAS.root_0
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas     656923 Apr 21 06:55 input.tar.gz
[2026-04-21 09:03:43] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 06:55 start_atlas.sh
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas  276393643 Apr 21 09:01 HITS.pool.root.1
[2026-04-21 09:03:43] -rw-------. 1 boincer umatlas    1177600 Apr 21 09:03 result.tar.gz
09:03:44 (302985): run_atlas exited; CPU time 39508.568096
09:03:44 (302985): called boinc_finish(0)

</stderr_txt>
]]>

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