Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:13:14 (3193829): wrapper (7.7.26015): starting
06:13:14 (3193829): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 06:13:14] Arguments: --nthreads 8
[2026-04-21 06:13:14] Threads: 8
[2026-04-21 06:13:14] Checking for CVMFS
[2026-04-21 06:13:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 06:13:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 06:13:15] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 06:13:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 06:13:17] 2.13.3.0 2758065 108843 508960 158686 1 332 27918969 32935937 23575 16776704 0 503825558 99.663 511732082 29441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 06:13:17] CVMFS is ok
[2026-04-21 06:13:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 06:13:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 06:13:17] Further information can be found at the LHC@home message board.
[2026-04-21 06:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 06:13:17] Checking for apptainer binary...
[2026-04-21 06:13:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 06:13:17] Running /usr/bin/apptainer --version
[2026-04-21 06:13:17] apptainer version 1.4.5-2.el9
[2026-04-21 06:13:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 06:13:17] c6-12-29-1.aglt2.org
[2026-04-21 06:13:17] apptainer works
[2026-04-21 06:13:17] Set ATHENA_PROC_NUMBER=8
[2026-04-21 06:13:17] Set ATHENA_CORE_NUMBER=8
[2026-04-21 06:13:18] Starting ATLAS job with PandaID=7105139010
[2026-04-21 06:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:20:12 (3193829): BOINC client no longer exists - exiting
06:20:12 (3193829): timer handler: client dead, exiting
06:30:20 (3355936): wrapper (7.7.26015): starting
06:30:20 (3355936): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 06:30:20] Arguments: --nthreads 8
[2026-04-21 06:30:20] Threads: 8
[2026-04-21 06:30:20] This job has been restarted, cleaning up previous attempt
[2026-04-21 06:30:20] Checking for CVMFS
[2026-04-21 06:30:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 06:30:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 06:30:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 06:30:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 06:30:21] 2.13.3.0 2758065 108860 510432 158687 0 658 28689631 32935937 20167 16776704 0 504849881 99.663 512019596 29440 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 06:30:21] CVMFS is ok
[2026-04-21 06:30:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 06:30:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 06:30:21] Further information can be found at the LHC@home message board.
[2026-04-21 06:30:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 06:30:21] Checking for apptainer binary...
[2026-04-21 06:30:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 06:30:21] Running /usr/bin/apptainer --version
[2026-04-21 06:30:21] apptainer version 1.4.5-2.el9
[2026-04-21 06:30:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 06:30:21] c6-12-29-1.aglt2.org
[2026-04-21 06:30:21] apptainer works
[2026-04-21 06:30:21] Set ATHENA_PROC_NUMBER=8
[2026-04-21 06:30:21] Set ATHENA_CORE_NUMBER=8
[2026-04-21 06:30:21] Starting ATLAS job with PandaID=7105139010
[2026-04-21 06:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 14:46:45]  *** The last 200 lines of the pilot log: ***
[2026-04-21 14:46:45] 2026-04-21 18:46:10,365 | INFO     | extracted standard info from prmon json
[2026-04-21 14:46:45] 2026-04-21 18:46:10,365 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 14:46:45] 2026-04-21 18:46:10,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 14:46:45] 2026-04-21 18:46:10,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 14:46:45] 2026-04-21 18:46:10,372 | INFO     | fitting pss+swap vs Time
[2026-04-21 14:46:45] 2026-04-21 18:46:10,373 | INFO     | sum of square deviations: 35813597460.50497
[2026-04-21 14:46:45] 2026-04-21 18:46:10,378 | INFO     | sum of deviations: 99266758754.75974
[2026-04-21 14:46:45] 2026-04-21 18:46:10,378 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,378 | INFO     | mean y: 2537837.665297741
[2026-04-21 14:46:45] 2026-04-21 18:46:10,378 | INFO     | intersect: 2537837.665297741
[2026-04-21 14:46:45] 2026-04-21 18:46:10,380 | INFO     | chi2: 2.5262320601636916
[2026-04-21 14:46:45] 2026-04-21 18:46:10,380 | INFO     | sum of square deviations: 34721774472.90715
[2026-04-21 14:46:45] 2026-04-21 18:46:10,385 | INFO     | sum of deviations: 131923195461.51248
[2026-04-21 14:46:45] 2026-04-21 18:46:10,385 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,385 | INFO     | mean y: 2542358.0145228216
[2026-04-21 14:46:45] 2026-04-21 18:46:10,385 | INFO     | intersect: 2542358.0145228216
[2026-04-21 14:46:45] 2026-04-21 18:46:10,386 | INFO     | chi2: 1.6639472810960234
[2026-04-21 14:46:45] 2026-04-21 18:46:10,386 | INFO     | current chi2=1.6639472810960234 (change=34.13323711091668 %)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,386 | INFO     | sum of square deviations: 33652370510.305923
[2026-04-21 14:46:45] 2026-04-21 18:46:10,391 | INFO     | sum of deviations: 129177643031.23677
[2026-04-21 14:46:45] 2026-04-21 18:46:10,391 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,391 | INFO     | mean y: 2541966.6582809226
[2026-04-21 14:46:45] 2026-04-21 18:46:10,391 | INFO     | intersect: 2541966.6582809226
[2026-04-21 14:46:45] 2026-04-21 18:46:10,392 | INFO     | chi2: 1.664155093876064
[2026-04-21 14:46:45] 2026-04-21 18:46:10,392 | INFO     | current chi2=1.664155093876064 (change=-0.012489144482016802 %)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,392 | INFO     | right removable region: 476
[2026-04-21 14:46:45] 2026-04-21 18:46:10,393 | INFO     | sum of square deviations: 34721732992.90715
[2026-04-21 14:46:45] 2026-04-21 18:46:10,398 | INFO     | sum of deviations: 11857146016.228233
[2026-04-21 14:46:45] 2026-04-21 18:46:10,398 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,398 | INFO     | mean y: 2550000.0995850624
[2026-04-21 14:46:45] 2026-04-21 18:46:10,399 | INFO     | intersect: 2550000.0995850624
[2026-04-21 14:46:45] 2026-04-21 18:46:10,399 | INFO     | chi2: 0.9426331560456721
[2026-04-21 14:46:45] 2026-04-21 18:46:10,399 | INFO     | current chi2=0.9426331560456721 (change=62.68620088747537 %)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,400 | INFO     | sum of square deviations: 33652375508.142628
[2026-04-21 14:46:45] 2026-04-21 18:46:10,405 | INFO     | sum of deviations: -6232577846.090153
[2026-04-21 14:46:45] 2026-04-21 18:46:10,406 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,406 | INFO     | mean y: 2552573.0167714884
[2026-04-21 14:46:45] 2026-04-21 18:46:10,406 | INFO     | intersect: 2552573.0167714884
[2026-04-21 14:46:45] 2026-04-21 18:46:10,407 | INFO     | chi2: 0.8876229147692711
[2026-04-21 14:46:45] 2026-04-21 18:46:10,407 | INFO     | current chi2=0.8876229147692711 (change=5.835805893691229 %)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,407 | INFO     | left removable region: 10
[2026-04-21 14:46:45] 2026-04-21 18:46:10,407 | INFO     | sum of square deviations: 31377453677.43343
[2026-04-21 14:46:45] 2026-04-21 18:46:10,413 | INFO     | sum of deviations: 25008405532.72962
[2026-04-21 14:46:45] 2026-04-21 18:46:10,413 | INFO     | mean x (centered): 0.0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,413 | INFO     | mean y: 2557073.8733905577
[2026-04-21 14:46:45] 2026-04-21 18:46:10,413 | INFO     | intersect: 2557073.8733905577
[2026-04-21 14:46:45] 2026-04-21 18:46:10,414 | INFO     | chi2: 0.014209330083877455
[2026-04-21 14:46:45] 2026-04-21 18:46:10,414 | INFO     | current memory leak: 0.80 B/s (using 466 data points, chi2=0.01)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | could have reported an average CPU frequency of 2526 MHz (20 samples)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | ..............................
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . Timing measurements:
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . get job = 0 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . initial setup = 1 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . payload setup = 15 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . stage-in = 0 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . payload execution = 29702 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . stage-out = 2 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | . log creation = 0 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,415 | INFO     | ..............................
[2026-04-21 14:46:45] 2026-04-21 18:46:10,538 | INFO     | 
[2026-04-21 14:46:45] 2026-04-21 18:46:10,539 | INFO     | job summary report
[2026-04-21 14:46:45] 2026-04-21 18:46:10,539 | INFO     | --------------------------------------------------
[2026-04-21 14:46:45] 2026-04-21 18:46:10,539 | INFO     | PanDA job id: 7105139010
[2026-04-21 14:46:45] 2026-04-21 18:46:10,539 | INFO     | task id: 49820244
[2026-04-21 14:46:45] 2026-04-21 18:46:10,539 | INFO     | errors: (none)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,542 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | pilot state: finished 
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | transexitcode: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | exeerrorcode: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | exeerrordiag: 
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | exitcode: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | exitmsg: OK
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | cpuconsumptiontime: 78485 s
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | nevents: 400
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | neventsw: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:10,543 | INFO     | pid: 3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | pgrp: 3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | corecount: 8
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | event service: False
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | sizes: {0: 2280899, 1: 2283385, 2: 2283385, 29721: 2321493, 29724: 2323569, 29727: 2323707}
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | --------------------------------------------------
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | 
[2026-04-21 14:46:45] 2026-04-21 18:46:10,544 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-04-21 14:46:45] 2026-04-21 18:46:10,584 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | job 7105139010 has completed (purged errors)
[2026-04-21 14:46:45] 2026-04-21 18:46:10,586 | INFO     | overall cleanup function is called
[2026-04-21 14:46:45] 2026-04-21 18:46:11,455 | WARNING  | process 3388553 can no longer be monitored (due to stat problems) - aborting
[2026-04-21 14:46:45] 2026-04-21 18:46:11,606 | INFO     | --- collectZombieJob: --- 10, [3388553]
[2026-04-21 14:46:45] 2026-04-21 18:46:11,607 | INFO     | zombie collector waiting for pid 3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:11,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 14:46:45] 2026-04-21 18:46:11,607 | INFO     | collected zombie processes
[2026-04-21 14:46:45] 2026-04-21 18:46:11,607 | INFO     | will attempt to kill all subprocesses of pid=3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:11,718 | INFO     | PID=3375219 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-21 14:46:45] 2026-04-21 18:46:11,718 | INFO     | .. there are 26 such processes running
[2026-04-21 14:46:45] 2026-04-21 18:46:12,063 | INFO     | using path: /tmp/boinchome/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 14:46:45] 2026-04-21 18:46:12,644 | INFO     | process IDs to be killed: [3388553] (in reverse order)
[2026-04-21 14:46:45] 2026-04-21 18:46:12,785 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 14:46:45] 2026-04-21 18:46:12,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 14:46:45] 2026-04-21 18:46:12,832 | INFO     | did not find any defunct processes belonging to 3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:12,867 | INFO     | did not find any defunct processes belonging to 3388553
[2026-04-21 14:46:45] 2026-04-21 18:46:12,867 | INFO     | Ready for new job
[2026-04-21 14:46:45] 2026-04-21 18:46:12,869 | INFO     | **************************************
[2026-04-21 14:46:45] 2026-04-21 18:46:12,869 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 14:46:45] 2026-04-21 18:46:12,869 | INFO     | **************************************
[2026-04-21 14:46:45] 2026-04-21 18:46:12,869 | INFO     | 
[2026-04-21 14:46:45] 2026-04-21 18:46:12,883 | INFO     | architecture information:
[2026-04-21 14:46:45] 2026-04-21 18:46:12,884 | INFO     | executing command: cat /etc/os-release
[2026-04-21 14:46:45] 2026-04-21 18:46:12,924 | INFO     | cat /etc/os-release:
[2026-04-21 14:46:45] NAME="CentOS Linux"
[2026-04-21 14:46:45] VERSION="7 (Core)"
[2026-04-21 14:46:45] ID="centos"
[2026-04-21 14:46:45] ID_LIKE="rhel fedora"
[2026-04-21 14:46:45] VERSION_ID="7"
[2026-04-21 14:46:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 14:46:45] ANSI_COLOR="0;31"
[2026-04-21 14:46:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 14:46:45] HOME_URL="https://www.centos.org/"
[2026-04-21 14:46:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 14:46:45] 
[2026-04-21 14:46:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 14:46:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 14:46:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 14:46:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 14:46:45] 
[2026-04-21 14:46:45] 2026-04-21 18:46:12,925 | INFO     | **************************************
[2026-04-21 14:46:45] 2026-04-21 18:46:12,955 | INFO     | number of running child processes to parent process 3388553: 1
[2026-04-21 14:46:45] 2026-04-21 18:46:12,955 | INFO     | maximum number of monitored processes: 6
[2026-04-21 14:46:45] 2026-04-21 18:46:12,956 | INFO     | aborting job monitoring since job object (job id=7105139010) has expired
[2026-04-21 14:46:45] 2026-04-21 18:46:13,430 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-04-21 14:46:45] 2026-04-21 18:46:13,454 | INFO     | sufficient remaining disk space (78491156480 B)
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | INFO     | update_server=False
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | INFO     | will abort loop
[2026-04-21 14:46:45] 2026-04-21 18:46:13,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 14:46:45] 2026-04-21 18:46:13,470 | INFO     | all data control threads have been joined
[2026-04-21 14:46:45] 2026-04-21 18:46:13,938 | INFO     | all payload control threads have been joined
[2026-04-21 14:46:45] 2026-04-21 18:46:14,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 14:46:45] 2026-04-21 18:46:14,460 | INFO     | [job] retrieve thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:14,461 | INFO     | [job] job monitor thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:14,479 | INFO     | [data] control thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:14,815 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:14,852 | INFO     | all job control threads have been joined
[2026-04-21 14:46:45] 2026-04-21 18:46:14,945 | INFO     | [payload] control thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,175 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,312 | INFO     | [payload] failed_post thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,340 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,461 | INFO     | [data] copytool_out thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:46:45] 2026-04-21 18:46:15,589 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,736 | INFO     | [data] copytool_in thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,803 | INFO     | [job] validate thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,858 | INFO     | [job] control thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:15,860 | INFO     | [payload] validate_post thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:16,557 | INFO     | [job] queue monitor thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:18,297 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 14:46:45] 2026-04-21 18:46:34,910 | INFO     | [monitor] cgroup control has ended
[2026-04-21 14:46:45] 2026-04-21 18:46:35,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359081129792)>', '<ExcThread(monitor, started 140358314878720)>']
[2026-04-21 14:46:45] 2026-04-21 18:46:40,684 | INFO     | all workflow threads have been joined
[2026-04-21 14:46:45] 2026-04-21 18:46:40,685 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 14:46:45] 2026-04-21 18:46:40,685 | INFO     | traces error code: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:40,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 14:46:45] 2026-04-21 18:46:44,457 | INFO     | PID=3375219 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 14:46:45] 2026-04-21 18:46:44,457 | INFO     | .. there are 26 such processes running
[2026-04-21 14:46:45] 2026-04-21 18:46:44,457 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 14:46:45] 2026-04-21 18:46:44,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 14:46:45] 2026-04-21 18:46:44,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 14:46:45] 2026-04-21 18:46:44,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 14:46:45] 2026-04-21 18:46:44,458 | INFO     | [monitor] control thread has ended
[2026-04-21 14:46:45] 2026-04-21 18:46:44,698 [wrapper] ==== pilot stdout END ====
[2026-04-21 14:46:45] 2026-04-21 18:46:44,703 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 14:46:45] 2026-04-21 18:46:44,707 [wrapper] pilotpid: 3375219
[2026-04-21 14:46:45] 2026-04-21 18:46:44,711 [wrapper] Pilot exit status: 0
[2026-04-21 14:46:45] 2026-04-21 18:46:44,741 [wrapper] pandaids: 7105139010 7105139010
[2026-04-21 14:46:45] 2026-04-21 18:46:44,829 [wrapper] cleanup supervisor_pilot 1261529 3375220
[2026-04-21 14:46:45] 2026-04-21 18:46:44,833 [wrapper] Test setup, not cleaning
[2026-04-21 14:46:45] 2026-04-21 18:46:44,837 [wrapper] apfmon messages muted
[2026-04-21 14:46:45] 2026-04-21 18:46:44,842 [wrapper] ==== wrapper stdout END ====
[2026-04-21 14:46:45] 2026-04-21 18:46:44,847 [wrapper] ==== wrapper stderr END ====
[2026-04-21 14:46:45]  *** Error codes and diagnostics ***
[2026-04-21 14:46:45]     "exeErrorCode": 0,
[2026-04-21 14:46:45]     "pilotErrorCode": 0,
[2026-04-21 14:46:45]  *** Listing of results directory ***
[2026-04-21 14:46:45] total 4622520
[2026-04-21 14:46:45] drwx------. 5 boincer umatlas       4096 Apr  1 08:07 pilot3
[2026-04-21 14:46:45] -rwx------. 1 boincer umatlas      36322 Apr 21 03:48 runpilot2-wrapper.sh
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 05:10 pilot3.tar.gz
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:22 queuedata.json
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas        100 Apr 21 06:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 14:46:45] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 06:13 run_atlas
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas        105 Apr 21 06:13 job.xml
[2026-04-21 14:46:45] -rw-r--r--. 3 boincer umatlas 2226500010 Apr 21 06:13 EVNT.49820242._000036.pool.root.1
[2026-04-21 14:46:45] -rw-r--r--. 3 boincer umatlas 2226500010 Apr 21 06:13 ATLAS.root_0
[2026-04-21 14:46:45] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 06:13 shared
[2026-04-21 14:46:45] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 06:13 input.tar.gz
[2026-04-21 14:46:45] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 06:13 start_atlas.sh
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas          0 Apr 21 06:13 boinc_lockfile
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 06:30 pandaJob.out
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas         57 Apr 21 06:30 setup.sh.local
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas     995858 Apr 21 06:30 agis_schedconf.cvmfs.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas        443 Apr 21 06:30 workernode_map.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas  270242477 Apr 21 14:45 HITS.49820244._013335.pool.root.1
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas        489 Apr 21 14:45 boinc_task_state.xml
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas       6795 Apr 21 14:45 init_data.xml
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas         96 Apr 21 14:45 pilot_heartbeat.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas       1056 Apr 21 14:46 memory_monitor_summary.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas    1509089 Apr 21 14:46 agis_ddmendpoints.agis.ALL.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas     590262 Apr 21 14:46 log.49820244._013335.job.log.tgz.1
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas       6438 Apr 21 14:46 heartbeat_new.json
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas       6329 Apr 21 14:46 heartbeat.json
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 14:46 boinc_mmap_file
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas         28 Apr 21 14:46 wrapper_checkpoint.txt
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas        823 Apr 21 14:46 pilotlog.txt
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas    2485142 Apr 21 14:46 log.49820244._013335.job.log.1
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas        357 Apr 21 14:46 output.list
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas        410 Apr 21 14:46 runtime_log
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas    3092480 Apr 21 14:46 result.tar.gz
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas       9059 Apr 21 14:46 runtime_log.err
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas        790 Apr 21 14:46 2bc1f349f2cf.diag
[2026-04-21 14:46:45] -rw-r--r--. 1 boincer umatlas      23426 Apr 21 14:46 stderr.txt
[2026-04-21 14:46:45] HITS file was successfully produced:
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas 270242477 Apr 21 14:45 shared/HITS.pool.root.1
[2026-04-21 14:46:45]  *** Contents of shared directory: ***
[2026-04-21 14:46:45] total 2441920
[2026-04-21 14:46:45] -rw-r--r--. 3 boincer umatlas 2226500010 Apr 21 06:13 ATLAS.root_0
[2026-04-21 14:46:45] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 06:13 input.tar.gz
[2026-04-21 14:46:45] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 06:13 start_atlas.sh
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas  270242477 Apr 21 14:45 HITS.pool.root.1
[2026-04-21 14:46:45] -rw-------. 1 boincer umatlas    3092480 Apr 21 14:46 result.tar.gz
14:46:46 (3355936): run_atlas exited; CPU time 80014.080927
14:46:46 (3355936): called boinc_finish(0)

</stderr_txt>
]]>

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