Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:54:30 (1354738): wrapper (7.7.26015): starting
02:54:30 (1354738): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 02:54:30] Arguments: --nthreads 4
[2026-04-22 02:54:30] Threads: 4
[2026-04-22 02:54:30] Checking for CVMFS
[2026-04-22 02:54:30] No cvmfs_config command found, will try listing directly
[2026-04-22 02:54:30] CVMFS is ok
[2026-04-22 02:54:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 02:54:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 02:54:31] Further information can be found at the LHC@home message board.
[2026-04-22 02:54:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 02:54:31] Checking for apptainer binary...
[2026-04-22 02:54:31] which: no apptainer in ((null))
[2026-04-22 02:54:31] apptainer is not installed, using version from CVMFS
[2026-04-22 02:54:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 02:54:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot100/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-22 02:54:31] apptainer works
[2026-04-22 02:54:31] Set ATHENA_PROC_NUMBER=4
[2026-04-22 02:54:31] Set ATHENA_CORE_NUMBER=4
[2026-04-22 02:54:31] Starting ATLAS job with PandaID=7104804039
[2026-04-22 02:54:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot100/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 06:01:11]  *** The last 200 lines of the pilot log: ***
[2026-04-22 06:01:11] 2026-04-22 04:00:13,820 | INFO     | monitor loop #783: job 0:7104804039 is in state 'finished'
[2026-04-22 06:01:11] 2026-04-22 04:00:13,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,086 | INFO     | job 7104804039 has state=finished
[2026-04-22 06:01:11] 2026-04-22 04:00:14,087 | INFO     | preparing for final server update for job 7104804039 in state='finished'
[2026-04-22 06:01:11] 2026-04-22 04:00:14,087 | INFO     | reading metadata from: /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7104804039/jobReport.json
[2026-04-22 06:01:11] 2026-04-22 04:00:14,090 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot100/slots/1/workernode_map.json
[2026-04-22 06:01:11] 2026-04-22 04:00:14,090 | INFO     | this job has now completed (state=finished)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,090 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,090 | INFO     | log transfer has been attempted: DONE
[2026-04-22 06:01:11] 2026-04-22 04:00:14,090 | INFO     | job 7104804039 has finished - writing final server update
[2026-04-22 06:01:11] 2026-04-22 04:00:14,091 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_9793/.job.ad'
[2026-04-22 06:01:11] 2026-04-22 04:00:14,091 | INFO     | total number of processed events: 400 (read)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,110 | INFO     | using path: /var/lib/boinc/var/slot100/slots/1/PanDA_Pilot-7104804039/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,110 | INFO     | extracted standard info from prmon json
[2026-04-22 06:01:11] 2026-04-22 04:00:14,111 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 06:01:11] 2026-04-22 04:00:14,111 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 06:01:11] 2026-04-22 04:00:14,111 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 06:01:11] 2026-04-22 04:00:14,113 | INFO     | fitting pss+swap vs Time
[2026-04-22 06:01:11] 2026-04-22 04:00:14,113 | INFO     | sum of square deviations: 1869302025.5
[2026-04-22 06:01:11] 2026-04-22 04:00:14,115 | INFO     | sum of deviations: 22170846683.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,116 | INFO     | mean x (centered): 0.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,116 | INFO     | mean y: 2359372.6153846155
[2026-04-22 06:01:11] 2026-04-22 04:00:14,116 | INFO     | intersect: 2359372.6153846155
[2026-04-22 06:01:11] 2026-04-22 04:00:14,116 | INFO     | chi2: 1.1736217562329812
[2026-04-22 06:01:11] 2026-04-22 04:00:14,116 | INFO     | sum of square deviations: 1719429448.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | sum of deviations: 21494551760.999992
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | mean x (centered): 0.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | mean y: 2358684.361581921
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | intersect: 2358684.361581921
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | chi2: 1.1742463415811648
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | current chi2=1.1742463415811648 (change=-0.053218623876606974 %)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | right removable region: 176
[2026-04-22 06:01:11] 2026-04-22 04:00:14,117 | INFO     | sum of square deviations: 1719429448.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | sum of deviations: 1413578925.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | mean x (centered): 0.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | mean y: 2380167.672316384
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | intersect: 2380167.672316384
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | chi2: 0.0023238411326442113
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | current chi2=0.0023238411326442113 (change=99.8019940308449 %)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,118 | INFO     | sum of square deviations: 1577789583.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | sum of deviations: 1313556889.5
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | mean x (centered): 0.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | mean y: 2380270.25
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | intersect: 2380270.25
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | chi2: 0.0022129915779964203
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | current chi2=0.0022129915779964203 (change=4.770100377802478 %)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | left removable region: 10
[2026-04-22 06:01:11] 2026-04-22 04:00:14,119 | INFO     | sum of square deviations: 1418361477.5
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | sum of deviations: 1206418258.5000002
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | mean x (centered): 0.0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | mean y: 2380147.3674698793
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | intersect: 2380147.3674698793
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | chi2: 0.0022122160013152547
[2026-04-22 06:01:11] 2026-04-22 04:00:14,120 | INFO     | current memory leak: 0.85 B/s (using 166 data points, chi2=0.00)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | could have reported an average CPU frequency of 2763 MHz (10 samples)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | ..............................
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . Timing measurements:
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . get job = 0 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . initial setup = 6 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . payload setup = 12 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . stage-in = 0 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . payload execution = 11094 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . stage-out = 0 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | . log creation = 0 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,121 | INFO     | ..............................
[2026-04-22 06:01:11] 2026-04-22 04:00:14,212 | INFO     | 
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | job summary report
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | --------------------------------------------------
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | PanDA job id: 7104804039
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | task id: 49820244
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | errors: (none)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | pilot state: finished 
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | transexitcode: 0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | exeerrorcode: 0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,213 | INFO     | exeerrordiag: 
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | exitcode: 0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | exitmsg: OK
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | cpuconsumptiontime: 42933 s
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | nevents: 400
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | neventsw: 0
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | pid: 1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | pgrp: 1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | corecount: 4
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | event service: False
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | sizes: {0: 2276391, 11: 2276391, 11111: 2305753, 11113: 2314803, 11114: 2315053}
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | --------------------------------------------------
[2026-04-22 06:01:11] 2026-04-22 04:00:14,214 | INFO     | 
[2026-04-22 06:01:11] 2026-04-22 04:00:14,215 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot100/slots/1
[2026-04-22 06:01:11] 2026-04-22 04:00:14,238 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,240 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 06:01:11] 2026-04-22 04:00:14,241 | INFO     | job 7104804039 has completed (purged errors)
[2026-04-22 06:01:11] 2026-04-22 04:00:14,241 | INFO     | overall cleanup function is called
[2026-04-22 06:01:11] 2026-04-22 04:00:15,250 | INFO     | --- collectZombieJob: --- 10, [1373092]
[2026-04-22 06:01:11] 2026-04-22 04:00:15,250 | INFO     | zombie collector waiting for pid 1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:15,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 06:01:11] 2026-04-22 04:00:15,251 | INFO     | collected zombie processes
[2026-04-22 06:01:11] 2026-04-22 04:00:15,251 | INFO     | will attempt to kill all subprocesses of pid=1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:15,710 | INFO     | process IDs to be killed: [1373092] (in reverse order)
[2026-04-22 06:01:11] 2026-04-22 04:00:15,878 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 06:01:11] 2026-04-22 04:00:15,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 06:01:11] 2026-04-22 04:00:15,899 | INFO     | did not find any defunct processes belonging to 1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:15,913 | INFO     | did not find any defunct processes belonging to 1373092
[2026-04-22 06:01:11] 2026-04-22 04:00:15,913 | INFO     | Ready for new job
[2026-04-22 06:01:11] 2026-04-22 04:00:15,915 | INFO     | **************************************
[2026-04-22 06:01:11] 2026-04-22 04:00:15,915 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 06:01:11] 2026-04-22 04:00:15,915 | INFO     | **************************************
[2026-04-22 06:01:11] 2026-04-22 04:00:15,915 | INFO     | 
[2026-04-22 06:01:11] 2026-04-22 04:00:15,921 | INFO     | architecture information:
[2026-04-22 06:01:11] 2026-04-22 04:00:15,921 | INFO     | executing command: cat /etc/os-release
[2026-04-22 06:01:11] 2026-04-22 04:00:15,937 | INFO     | cat /etc/os-release:
[2026-04-22 06:01:11] NAME="CentOS Linux"
[2026-04-22 06:01:11] VERSION="7 (Core)"
[2026-04-22 06:01:11] ID="centos"
[2026-04-22 06:01:11] ID_LIKE="rhel fedora"
[2026-04-22 06:01:11] VERSION_ID="7"
[2026-04-22 06:01:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 06:01:11] ANSI_COLOR="0;31"
[2026-04-22 06:01:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 06:01:11] HOME_URL="https://www.centos.org/"
[2026-04-22 06:01:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 06:01:11] 
[2026-04-22 06:01:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 06:01:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 06:01:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 06:01:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 06:01:11] 
[2026-04-22 06:01:11] 2026-04-22 04:00:15,938 | INFO     | **************************************
[2026-04-22 06:01:11] 2026-04-22 04:00:16,440 | INFO     | executing command: df -mP /var/lib/boinc/var/slot100/slots/1
[2026-04-22 06:01:11] 2026-04-22 04:00:16,462 | INFO     | sufficient remaining disk space (209232855040 B)
[2026-04-22 06:01:11] 2026-04-22 04:00:16,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 06:01:11] 2026-04-22 04:00:16,462 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 06:01:11] 2026-04-22 04:00:16,462 | INFO     | update_server=False
[2026-04-22 06:01:11] 2026-04-22 04:00:16,462 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 06:01:11] 2026-04-22 04:00:16,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 06:01:11] 2026-04-22 04:00:16,844 | INFO     | all job control threads have been joined
[2026-04-22 06:01:11] 2026-04-22 04:00:17,043 | INFO     | all payload control threads have been joined
[2026-04-22 06:01:11] 2026-04-22 04:00:17,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 06:01:11] 2026-04-22 04:00:17,334 | INFO     | aborting loop
[2026-04-22 06:01:11] 2026-04-22 04:00:17,468 | INFO     | [job] retrieve thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:17,502 | INFO     | [data] copytool_in thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:17,540 | INFO     | all data control threads have been joined
[2026-04-22 06:01:11] 2026-04-22 04:00:17,710 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:17,850 | INFO     | [job] control thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,049 | INFO     | [payload] control thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,200 | INFO     | [payload] validate_post thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,321 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,323 | INFO     | [job] validate thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,340 | INFO     | [job] job monitor thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,405 | INFO     | [payload] failed_post thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,468 | INFO     | [data] copytool_out thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,496 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,545 | INFO     | [data] control thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:18,676 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:19,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 06:01:11] 2026-04-22 04:00:19,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 06:01:11] 2026-04-22 04:00:20,193 | INFO     | [job] queue monitor thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:23,892 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 06:01:11] 2026-04-22 04:00:45,946 | INFO     | 11134s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-22 06:01:11] 2026-04-22 04:00:47,583 | INFO     | PID=1362283 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-22 06:01:11] 2026-04-22 04:00:47,583 | INFO     | .. there are 9 such processes running
[2026-04-22 06:01:11] 2026-04-22 04:00:47,584 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 06:01:11] 2026-04-22 04:00:47,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 06:01:11] 2026-04-22 04:00:47,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 06:01:11] 2026-04-22 04:01:04,637 | INFO     | [monitor] cgroup control has ended
[2026-04-22 06:01:11] 2026-04-22 04:01:05,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22546940811072)>', '<ExcThread(monitor, started 22546702677760)>']
[2026-04-22 06:01:11] 2026-04-22 04:01:05,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 06:01:11] 2026-04-22 04:01:05,675 | INFO     | [monitor] control thread has ended
[2026-04-22 06:01:11] 2026-04-22 04:01:10,668 | INFO     | all workflow threads have been joined
[2026-04-22 06:01:11] 2026-04-22 04:01:10,671 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 06:01:11] 2026-04-22 04:01:10,671 | INFO     | traces error code: 0
[2026-04-22 06:01:11] 2026-04-22 04:01:10,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 06:01:11] 2026-04-22 04:01:10,841 [wrapper] ==== pilot stdout END ====
[2026-04-22 06:01:11] 2026-04-22 04:01:10,844 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 06:01:11] 2026-04-22 04:01:10,847 [wrapper] pilotpid: 1362283
[2026-04-22 06:01:11] 2026-04-22 04:01:10,850 [wrapper] Pilot exit status: 0
[2026-04-22 06:01:11] 2026-04-22 04:01:10,861 [wrapper] pandaids: 7104804039
[2026-04-22 06:01:11] 2026-04-22 04:01:10,979 [wrapper] cleanup supervisor_pilot 1635723 1362284
[2026-04-22 06:01:11] 2026-04-22 04:01:10,983 [wrapper] Test setup, not cleaning
[2026-04-22 06:01:11] 2026-04-22 04:01:10,985 [wrapper] apfmon messages muted
[2026-04-22 06:01:11] 2026-04-22 04:01:10,988 [wrapper] ==== wrapper stdout END ====
[2026-04-22 06:01:11] 2026-04-22 04:01:10,990 [wrapper] ==== wrapper stderr END ====
[2026-04-22 06:01:11]  *** Error codes and diagnostics ***
[2026-04-22 06:01:11]     "exeErrorCode": 0,
[2026-04-22 06:01:11]     "pilotErrorCode": 0,
[2026-04-22 06:01:11]  *** Listing of results directory ***
[2026-04-22 06:01:11] total 2478632
[2026-04-22 06:01:11] -rwx------. 1 boinc boinc      36322 Apr 21 09:45 runpilot2-wrapper.sh
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc     644190 Apr 21 10:49 pilot3.tar.gz
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:22 queuedata.json
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc        100 Apr 22 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 06:01:11] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 02:54 run_atlas
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc        105 Apr 22 02:54 job.xml
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc 2259978159 Apr 22 02:54 EVNT.49820242._000020.pool.root.1
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc       6540 Apr 22 02:54 init_data.xml
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc      15665 Apr 22 02:54 start_atlas.sh
[2026-04-22 06:01:11] drwxrwx--x. 2 boinc boinc       4096 Apr 22 02:54 shared
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc     656928 Apr 22 02:54 input.tar.gz
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc          0 Apr 22 02:54 boinc_lockfile
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc       2551 Apr 22 02:54 pandaJob.out
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc     997058 Apr 22 02:54 agis_schedconf.cvmfs.json
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc        444 Apr 22 02:54 workernode_map.json
[2026-04-22 06:01:11] drwx------. 5 boinc boinc       4096 Apr 22 02:54 pilot3
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc  271312958 Apr 22 05:59 HITS.49820244._012199.pool.root.1
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc        488 Apr 22 05:59 boinc_task_state.xml
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc       1039 Apr 22 06:00 memory_monitor_summary.json
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc    1509089 Apr 22 06:00 agis_ddmendpoints.agis.ALL.json
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc     348283 Apr 22 06:00 log.49820244._012199.job.log.tgz.1
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc       6373 Apr 22 06:00 heartbeat_new.json
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc       6264 Apr 22 06:00 heartbeat.json
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc         95 Apr 22 06:00 pilot_heartbeat.json
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc       8192 Apr 22 06:01 boinc_mmap_file
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc         27 Apr 22 06:01 wrapper_checkpoint.txt
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc       4945 Apr 22 06:01 pilotlog.txt
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc    1034052 Apr 22 06:01 log.49820244._012199.job.log.1
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc        357 Apr 22 06:01 output.list
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc        410 Apr 22 06:01 runtime_log
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc    1402880 Apr 22 06:01 result.tar.gz
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc       8844 Apr 22 06:01 runtime_log.err
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc        666 Apr 22 06:01 2b1917b889ed.diag
[2026-04-22 06:01:11] -rw-r--r--. 1 boinc boinc      21067 Apr 22 06:01 stderr.txt
[2026-04-22 06:01:11] HITS file was successfully produced:
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc 271312958 Apr 22 05:59 shared/HITS.pool.root.1
[2026-04-22 06:01:11]  *** Contents of shared directory: ***
[2026-04-22 06:01:11] total 2474008
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc 2259978159 Apr 22 02:54 ATLAS.root_0
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc      15665 Apr 22 02:54 start_atlas.sh
[2026-04-22 06:01:11] -rw-r--r--. 2 boinc boinc     656928 Apr 22 02:54 input.tar.gz
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc  271312958 Apr 22 05:59 HITS.pool.root.1
[2026-04-22 06:01:11] -rw-------. 1 boinc boinc    1402880 Apr 22 06:01 result.tar.gz
06:01:12 (1354738): run_atlas exited; CPU time 43547.575095
06:01:12 (1354738): called boinc_finish(0)

</stderr_txt>
]]>

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