Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:31 (4001704): wrapper (7.7.26015): starting
05:32:31 (4001704): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 05:32:31] Arguments: --nthreads 4
[2026-04-22 05:32:31] Threads: 4
[2026-04-22 05:32:31] Checking for CVMFS
[2026-04-22 05:32:31] No cvmfs_config command found, will try listing directly
[2026-04-22 05:32:31] CVMFS is ok
[2026-04-22 05:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 05:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 05:32:31] Further information can be found at the LHC@home message board.
[2026-04-22 05:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 05:32:31] Checking for apptainer binary...
[2026-04-22 05:32:31] which: no apptainer in ((null))
[2026-04-22 05:32:31] apptainer is not installed, using version from CVMFS
[2026-04-22 05:32:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 05:32:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/12/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-04-22 05:32:31] apptainer works
[2026-04-22 05:32:31] Set ATHENA_PROC_NUMBER=4
[2026-04-22 05:32:31] Set ATHENA_CORE_NUMBER=4
[2026-04-22 05:32:31] Starting ATLAS job with PandaID=7105217712
[2026-04-22 05:32:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 09:59:20]  *** The last 200 lines of the pilot log: ***
[2026-04-22 09:59:20] 2026-04-22 07:57:39,118 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-22 09:59:20] 2026-04-22 07:57:39,207 | INFO     | job 7105217712 has state=finished
[2026-04-22 09:59:20] 2026-04-22 07:57:39,207 | INFO     | preparing for final server update for job 7105217712 in state='finished'
[2026-04-22 09:59:20] 2026-04-22 07:57:39,207 | INFO     | reading metadata from: /var/lib/boinc/var/slot104/slots/12/PanDA_Pilot-7105217712/jobReport.json
[2026-04-22 09:59:20] 2026-04-22 07:57:39,210 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot104/slots/12/workernode_map.json
[2026-04-22 09:59:20] 2026-04-22 07:57:39,210 | INFO     | this job has now completed (state=finished)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,210 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,210 | INFO     | log transfer has been attempted: DONE
[2026-04-22 09:59:20] 2026-04-22 07:57:39,210 | INFO     | job 7105217712 has finished - writing final server update
[2026-04-22 09:59:20] 2026-04-22 07:57:39,211 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_10350/.job.ad'
[2026-04-22 09:59:20] 2026-04-22 07:57:39,211 | INFO     | total number of processed events: 400 (read)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,234 | INFO     | using path: /var/lib/boinc/var/slot104/slots/12/PanDA_Pilot-7105217712/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,235 | INFO     | extracted standard info from prmon json
[2026-04-22 09:59:20] 2026-04-22 07:57:39,235 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 09:59:20] 2026-04-22 07:57:39,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 09:59:20] 2026-04-22 07:57:39,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 09:59:20] 2026-04-22 07:57:39,240 | INFO     | fitting pss+swap vs Time
[2026-04-22 09:59:20] 2026-04-22 07:57:39,241 | INFO     | sum of square deviations: 5449944045.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,242 | INFO     | sum of deviations: 14968227579.999992
[2026-04-22 09:59:20] 2026-04-22 07:57:39,242 | INFO     | mean x (centered): 0.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,243 | INFO     | mean y: 2379145.4846153846
[2026-04-22 09:59:20] 2026-04-22 07:57:39,243 | INFO     | intersect: 2379145.4846153846
[2026-04-22 09:59:20] 2026-04-22 07:57:39,243 | INFO     | chi2: 1.4101753083053625
[2026-04-22 09:59:20] 2026-04-22 07:57:39,243 | INFO     | sum of square deviations: 5141528960.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,245 | INFO     | sum of deviations: 14644225409.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,245 | INFO     | mean x (centered): 0.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,245 | INFO     | mean y: 2378985.098039216
[2026-04-22 09:59:20] 2026-04-22 07:57:39,245 | INFO     | intersect: 2378985.098039216
[2026-04-22 09:59:20] 2026-04-22 07:57:39,246 | INFO     | chi2: 1.4106234284983759
[2026-04-22 09:59:20] 2026-04-22 07:57:39,246 | INFO     | current chi2=1.4106234284983759 (change=-0.03177762299297662 %)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,246 | INFO     | right removable region: 254
[2026-04-22 09:59:20] 2026-04-22 07:57:39,246 | INFO     | sum of square deviations: 5141528960.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,248 | INFO     | sum of deviations: -19708561126.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,248 | INFO     | mean x (centered): 0.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,248 | INFO     | mean y: 2396121.6078431373
[2026-04-22 09:59:20] 2026-04-22 07:57:39,248 | INFO     | intersect: 2396121.6078431373
[2026-04-22 09:59:20] 2026-04-22 07:57:39,249 | INFO     | chi2: 0.048820927469295027
[2026-04-22 09:59:20] 2026-04-22 07:57:39,249 | INFO     | current chi2=0.048820927469295027 (change=96.53795331816126 %)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,249 | INFO     | sum of square deviations: 4844974562.5
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | sum of deviations: -16854098181.5
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | mean x (centered): 0.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | mean y: 2394642.3
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | intersect: 2394642.3
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | chi2: 0.04399367281364436
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | current chi2=0.04399367281364436 (change=9.887675031750835 %)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,251 | INFO     | left removable region: 10
[2026-04-22 09:59:20] 2026-04-22 07:57:39,252 | INFO     | sum of square deviations: 4504437945.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,253 | INFO     | sum of deviations: -16524470743.00001
[2026-04-22 09:59:20] 2026-04-22 07:57:39,253 | INFO     | mean x (centered): 0.0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,254 | INFO     | mean y: 2394819.2377049183
[2026-04-22 09:59:20] 2026-04-22 07:57:39,254 | INFO     | intersect: 2394819.2377049183
[2026-04-22 09:59:20] 2026-04-22 07:57:39,254 | INFO     | chi2: 0.04357655118675929
[2026-04-22 09:59:20] 2026-04-22 07:57:39,254 | INFO     | current memory leak: -3.67 B/s (using 244 data points, chi2=0.04)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,254 | INFO     | could have reported an average CPU frequency of 1997 MHz (12 samples)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | ..............................
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . Timing measurements:
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . get job = 0 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . initial setup = 9 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . payload setup = 16 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . stage-in = 0 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . payload execution = 15854 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . stage-out = 1 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | . log creation = 0 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,255 | INFO     | ..............................
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | 
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | job summary report
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | --------------------------------------------------
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | PanDA job id: 7105217712
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | task id: 49820375
[2026-04-22 09:59:20] 2026-04-22 07:57:39,340 | INFO     | errors: (none)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | pilot state: finished 
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | transexitcode: 0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | exeerrorcode: 0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | exeerrordiag: 
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | exitcode: 0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | exitmsg: OK
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | cpuconsumptiontime: 61489 s
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | nevents: 400
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | neventsw: 0
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | pid: 4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | pgrp: 4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | corecount: 4
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | event service: False
[2026-04-22 09:59:20] 2026-04-22 07:57:39,341 | INFO     | sizes: {0: 2274626, 1: 2276455, 2: 2276455, 15874: 2308486, 15876: 2317510, 15879: 2317888}
[2026-04-22 09:59:20] 2026-04-22 07:57:39,342 | INFO     | --------------------------------------------------
[2026-04-22 09:59:20] 2026-04-22 07:57:39,342 | INFO     | 
[2026-04-22 09:59:20] 2026-04-22 07:57:39,342 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot104/slots/12
[2026-04-22 09:59:20] 2026-04-22 07:57:39,367 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 09:59:20] 2026-04-22 07:57:39,370 | INFO     | job 7105217712 has completed (purged errors)
[2026-04-22 09:59:20] 2026-04-22 07:57:39,370 | INFO     | overall cleanup function is called
[2026-04-22 09:59:20] 2026-04-22 07:57:40,193 | INFO     | PID=4005803 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-22 09:59:20] 2026-04-22 07:57:40,193 | INFO     | .. there are 10 such processes running
[2026-04-22 09:59:20] 2026-04-22 07:57:40,380 | INFO     | --- collectZombieJob: --- 10, [4011188]
[2026-04-22 09:59:20] 2026-04-22 07:57:40,380 | INFO     | zombie collector waiting for pid 4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:40,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 09:59:20] 2026-04-22 07:57:40,381 | INFO     | collected zombie processes
[2026-04-22 09:59:20] 2026-04-22 07:57:40,381 | INFO     | will attempt to kill all subprocesses of pid=4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:40,853 | INFO     | process IDs to be killed: [4011188] (in reverse order)
[2026-04-22 09:59:20] 2026-04-22 07:57:41,032 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 09:59:20] 2026-04-22 07:57:41,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 09:59:20] 2026-04-22 07:57:41,060 | INFO     | did not find any defunct processes belonging to 4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:41,079 | INFO     | did not find any defunct processes belonging to 4011188
[2026-04-22 09:59:20] 2026-04-22 07:57:41,080 | INFO     | Ready for new job
[2026-04-22 09:59:20] 2026-04-22 07:57:41,082 | INFO     | **************************************
[2026-04-22 09:59:20] 2026-04-22 07:57:41,082 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 09:59:20] 2026-04-22 07:57:41,082 | INFO     | **************************************
[2026-04-22 09:59:20] 2026-04-22 07:57:41,082 | INFO     | 
[2026-04-22 09:59:20] 2026-04-22 07:57:41,090 | INFO     | architecture information:
[2026-04-22 09:59:20] 2026-04-22 07:57:41,090 | INFO     | executing command: cat /etc/os-release
[2026-04-22 09:59:20] 2026-04-22 07:57:41,111 | INFO     | cat /etc/os-release:
[2026-04-22 09:59:20] NAME="CentOS Linux"
[2026-04-22 09:59:20] VERSION="7 (Core)"
[2026-04-22 09:59:20] ID="centos"
[2026-04-22 09:59:20] ID_LIKE="rhel fedora"
[2026-04-22 09:59:20] VERSION_ID="7"
[2026-04-22 09:59:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 09:59:20] ANSI_COLOR="0;31"
[2026-04-22 09:59:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 09:59:20] HOME_URL="https://www.centos.org/"
[2026-04-22 09:59:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 09:59:20] 
[2026-04-22 09:59:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 09:59:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 09:59:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 09:59:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 09:59:20] 
[2026-04-22 09:59:20] 2026-04-22 07:57:41,111 | INFO     | **************************************
[2026-04-22 09:59:20] 2026-04-22 07:57:41,614 | INFO     | executing command: df -mP /var/lib/boinc/var/slot104/slots/12
[2026-04-22 09:59:20] 2026-04-22 07:57:41,636 | INFO     | sufficient remaining disk space (152849874944 B)
[2026-04-22 09:59:20] 2026-04-22 07:57:41,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 09:59:20] 2026-04-22 07:57:41,637 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 09:59:20] 2026-04-22 07:57:41,637 | INFO     | update_server=False
[2026-04-22 09:59:20] 2026-04-22 07:57:41,637 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 09:59:20] 2026-04-22 07:57:41,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 09:59:20] 2026-04-22 07:57:41,691 | INFO     | all payload control threads have been joined
[2026-04-22 09:59:20] 2026-04-22 07:57:41,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 09:59:20] 2026-04-22 07:57:42,101 | INFO     | all job control threads have been joined
[2026-04-22 09:59:20] 2026-04-22 07:57:42,405 | INFO     | all data control threads have been joined
[2026-04-22 09:59:20] 2026-04-22 07:57:42,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 09:59:20] 2026-04-22 07:57:42,609 | INFO     | aborting loop
[2026-04-22 09:59:20] 2026-04-22 07:57:42,642 | INFO     | [job] retrieve thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:42,697 | INFO     | [payload] control thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:42,891 | INFO     | [payload] validate_post thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:42,976 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,106 | INFO     | [job] control thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,308 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,406 | INFO     | [data] control thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,473 | INFO     | [data] copytool_in thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,582 | INFO     | [payload] failed_post thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,613 | INFO     | [job] job monitor thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,743 | INFO     | [data] copytool_out thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,807 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:43,964 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:44,130 | INFO     | [job] validate thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:44,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 09:59:20] 2026-04-22 07:57:45,357 | INFO     | [job] queue monitor thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:57:45,644 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 09:59:20] 2026-04-22 07:58:12,911 | INFO     | PID=4005803 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-22 09:59:20] 2026-04-22 07:58:12,912 | INFO     | .. there are 9 such processes running
[2026-04-22 09:59:20] 2026-04-22 07:58:12,912 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 09:59:20] 2026-04-22 07:58:12,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 09:59:20] 2026-04-22 07:58:12,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 09:59:20] 2026-04-22 07:58:20,604 | INFO     | [monitor] cgroup control has ended
[2026-04-22 09:59:20] 2026-04-22 07:58:22,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23079005103936)>', '<ExcThread(monitor, started 23078762714880)>']
[2026-04-22 09:59:20] 2026-04-22 07:58:22,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 09:59:20] 2026-04-22 07:58:22,962 | INFO     | [monitor] control thread has ended
[2026-04-22 09:59:20] 2026-04-22 07:58:27,028 | INFO     | all workflow threads have been joined
[2026-04-22 09:59:20] 2026-04-22 07:58:27,028 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 09:59:20] 2026-04-22 07:58:27,029 | INFO     | traces error code: 0
[2026-04-22 09:59:20] 2026-04-22 07:58:27,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 09:59:20] 2026-04-22 07:58:27,169 [wrapper] ==== pilot stdout END ====
[2026-04-22 09:59:20] 2026-04-22 07:58:27,172 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 09:59:20] 2026-04-22 07:58:27,174 [wrapper] pilotpid: 4005803
[2026-04-22 09:59:20] 2026-04-22 07:58:27,177 [wrapper] Pilot exit status: 0
[2026-04-22 09:59:20] 2026-04-22 07:58:27,187 [wrapper] pandaids: 7105217712
[2026-04-22 09:59:20] 2026-04-22 07:58:27,311 [wrapper] cleanup supervisor_pilot  103634 4005804
[2026-04-22 09:59:20] 2026-04-22 07:58:27,314 [wrapper] Test setup, not cleaning
[2026-04-22 09:59:20] 2026-04-22 07:58:27,317 [wrapper] apfmon messages muted
[2026-04-22 09:59:20] 2026-04-22 07:58:27,319 [wrapper] ==== wrapper stdout END ====
[2026-04-22 09:59:20] 2026-04-22 07:58:27,322 [wrapper] ==== wrapper stderr END ====
[2026-04-22 09:59:20]  *** Error codes and diagnostics ***
[2026-04-22 09:59:20]     "exeErrorCode": 0,
[2026-04-22 09:59:20]     "pilotErrorCode": 0,
[2026-04-22 09:59:20]  *** Listing of results directory ***
[2026-04-22 09:59:20] total 2454204
[2026-04-22 09:59:20] -rwx------. 1 boinc boinc      36322 Apr 21 09:45 runpilot2-wrapper.sh
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc     644190 Apr 21 10:49 pilot3.tar.gz
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:14 queuedata.json
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc        100 Apr 22 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 09:59:20] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 05:32 run_atlas
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc        105 Apr 22 05:32 job.xml
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc 2233515068 Apr 22 05:32 EVNT.49820373._000038.pool.root.1
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc       6613 Apr 22 05:32 init_data.xml
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc      15665 Apr 22 05:32 start_atlas.sh
[2026-04-22 09:59:20] drwxrwx--x. 2 boinc boinc       4096 Apr 22 05:32 shared
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc     656936 Apr 22 05:32 input.tar.gz
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc          0 Apr 22 05:32 boinc_lockfile
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc       2586 Apr 22 05:32 pandaJob.out
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc     997066 Apr 22 05:32 agis_schedconf.cvmfs.json
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc        444 Apr 22 05:32 workernode_map.json
[2026-04-22 09:59:20] drwx------. 5 boinc boinc       4096 Apr 22 05:32 pilot3
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc  271846855 Apr 22 09:57 HITS.49820375._010321.pool.root.1
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc         95 Apr 22 09:57 pilot_heartbeat.json
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc        488 Apr 22 09:57 boinc_task_state.xml
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc       1027 Apr 22 09:57 memory_monitor_summary.json
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc    1509089 Apr 22 09:57 agis_ddmendpoints.agis.ALL.json
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc     419856 Apr 22 09:57 log.49820375._010321.job.log.tgz.1
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc       6375 Apr 22 09:57 heartbeat_new.json
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc       6266 Apr 22 09:57 heartbeat.json
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc       4830 Apr 22 09:58 pilotlog.txt
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc    1423126 Apr 22 09:58 log.49820375._010321.job.log.1
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc        357 Apr 22 09:58 output.list
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc        410 Apr 22 09:58 runtime_log
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc    1863680 Apr 22 09:58 result.tar.gz
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc       8861 Apr 22 09:58 runtime_log.err
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc        665 Apr 22 09:58 2b0670bbadbf.diag
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc         27 Apr 22 09:59 wrapper_checkpoint.txt
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc       8192 Apr 22 09:59 boinc_mmap_file
[2026-04-22 09:59:20] -rw-r--r--. 1 boinc boinc      21143 Apr 22 09:59 stderr.txt
[2026-04-22 09:59:20] HITS file was successfully produced:
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc 271846855 Apr 22 09:57 shared/HITS.pool.root.1
[2026-04-22 09:59:20]  *** Contents of shared directory: ***
[2026-04-22 09:59:20] total 2449132
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc 2233515068 Apr 22 05:32 ATLAS.root_0
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc      15665 Apr 22 05:32 start_atlas.sh
[2026-04-22 09:59:20] -rw-r--r--. 2 boinc boinc     656936 Apr 22 05:32 input.tar.gz
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc  271846855 Apr 22 09:57 HITS.pool.root.1
[2026-04-22 09:59:20] -rw-------. 1 boinc boinc    1863680 Apr 22 09:58 result.tar.gz
09:59:21 (4001704): run_atlas exited; CPU time 62801.327229
09:59:21 (4001704): called boinc_finish(0)

</stderr_txt>
]]>

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