Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:01 (827292): wrapper (7.7.26015): starting
16:58:01 (827292): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 16:58:01] Arguments: --nthreads 4
[2026-04-22 16:58:01] Threads: 4
[2026-04-22 16:58:01] Checking for CVMFS
[2026-04-22 16:58:01] No cvmfs_config command found, will try listing directly
[2026-04-22 16:58:01] CVMFS is ok
[2026-04-22 16:58:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 16:58:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 16:58:01] Further information can be found at the LHC@home message board.
[2026-04-22 16:58:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 16:58:01] Checking for apptainer binary...
[2026-04-22 16:58:01] which: no apptainer in ((null))
[2026-04-22 16:58:01] apptainer is not installed, using version from CVMFS
[2026-04-22 16:58:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 16:58:01] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/12/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-04-22 16:58:01] apptainer works
[2026-04-22 16:58:01] Set ATHENA_PROC_NUMBER=4
[2026-04-22 16:58:01] Set ATHENA_CORE_NUMBER=4
[2026-04-22 16:58:01] Starting ATLAS job with PandaID=7105217185
[2026-04-22 16:58:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:16 (973329): wrapper (7.7.26015): starting
18:12:16 (973329): wrapper: running run_atlas (--nthreads 4)
[2026-04-22 18:12:16] Arguments: --nthreads 4
[2026-04-22 18:12:16] Threads: 4
[2026-04-22 18:12:16] This job has been restarted, cleaning up previous attempt
[2026-04-22 18:12:16] Checking for CVMFS
[2026-04-22 18:12:16] No cvmfs_config command found, will try listing directly
[2026-04-22 18:12:16] CVMFS is ok
[2026-04-22 18:12:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-22 18:12:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-22 18:12:16] Further information can be found at the LHC@home message board.
[2026-04-22 18:12:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-22 18:12:16] Checking for apptainer binary...
[2026-04-22 18:12:16] which: no apptainer in ((null))
[2026-04-22 18:12:16] apptainer is not installed, using version from CVMFS
[2026-04-22 18:12:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-22 18:12:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/12/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-04-22 18:12:16] apptainer works
[2026-04-22 18:12:16] Set ATHENA_PROC_NUMBER=4
[2026-04-22 18:12:16] Set ATHENA_CORE_NUMBER=4
[2026-04-22 18:12:16] Starting ATLAS job with PandaID=7105217185
[2026-04-22 18:12:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-22 22:32:54]  *** The last 200 lines of the pilot log: ***
[2026-04-22 22:32:54] 2026-04-22 20:31:50,488 | INFO     | using path: /var/lib/boinc/var/slot104/slots/12/PanDA_Pilot-7105217185/memory_monitor_summary.json (trf name=prmon)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,489 | INFO     | extracted standard info from prmon json
[2026-04-22 22:32:54] 2026-04-22 20:31:50,489 | INFO     | extracted standard memory fields from prmon json
[2026-04-22 22:32:54] 2026-04-22 20:31:50,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-22 22:32:54] 2026-04-22 20:31:50,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-22 22:32:54] 2026-04-22 20:31:50,496 | INFO     | fitting pss+swap vs Time
[2026-04-22 22:32:54] 2026-04-22 20:31:50,497 | INFO     | sum of square deviations: 5141528960.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,499 | INFO     | sum of deviations: 11276434380.000002
[2026-04-22 22:32:54] 2026-04-22 20:31:50,499 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,500 | INFO     | mean y: 2359295.1215686277
[2026-04-22 22:32:54] 2026-04-22 20:31:50,500 | INFO     | intersect: 2359295.1215686277
[2026-04-22 22:32:54] 2026-04-22 20:31:50,500 | INFO     | chi2: 1.7869531829134866
[2026-04-22 22:32:54] 2026-04-22 20:31:50,501 | INFO     | sum of square deviations: 4844974562.5
[2026-04-22 22:32:54] 2026-04-22 20:31:50,503 | INFO     | sum of deviations: 25923013443.499996
[2026-04-22 22:32:54] 2026-04-22 20:31:50,503 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,504 | INFO     | mean y: 2366703.796
[2026-04-22 22:32:54] 2026-04-22 20:31:50,504 | INFO     | intersect: 2366703.796
[2026-04-22 22:32:54] 2026-04-22 20:31:50,504 | INFO     | chi2: 1.1030240395349982
[2026-04-22 22:32:54] 2026-04-22 20:31:50,504 | INFO     | current chi2=1.1030240395349982 (change=38.27347856217451 %)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,505 | INFO     | sum of square deviations: 4560048290.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,507 | INFO     | sum of deviations: 25330801684.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,508 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,508 | INFO     | mean y: 2366386.9795918367
[2026-04-22 22:32:54] 2026-04-22 20:31:50,508 | INFO     | intersect: 2366386.9795918367
[2026-04-22 22:32:54] 2026-04-22 20:31:50,508 | INFO     | chi2: 1.1033675228030786
[2026-04-22 22:32:54] 2026-04-22 20:31:50,509 | INFO     | current chi2=1.1033675228030786 (change=-0.031140143439233357 %)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,509 | INFO     | right removable region: 244
[2026-04-22 22:32:54] 2026-04-22 20:31:50,509 | INFO     | sum of square deviations: 4844974562.5
[2026-04-22 22:32:54] 2026-04-22 20:31:50,512 | INFO     | sum of deviations: -15372176320.5
[2026-04-22 22:32:54] 2026-04-22 20:31:50,512 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,512 | INFO     | mean y: 2372842.892
[2026-04-22 22:32:54] 2026-04-22 20:31:50,512 | INFO     | intersect: 2372842.892
[2026-04-22 22:32:54] 2026-04-22 20:31:50,513 | INFO     | chi2: 0.6969785306543387
[2026-04-22 22:32:54] 2026-04-22 20:31:50,513 | INFO     | current chi2=0.6969785306543387 (change=60.99626239127485 %)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,513 | INFO     | sum of square deviations: 4560048290.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,515 | INFO     | sum of deviations: -16288105991.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,516 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,516 | INFO     | mean y: 2373330.089795918
[2026-04-22 22:32:54] 2026-04-22 20:31:50,516 | INFO     | intersect: 2373330.089795918
[2026-04-22 22:32:54] 2026-04-22 20:31:50,516 | INFO     | chi2: 0.6958086405946754
[2026-04-22 22:32:54] 2026-04-22 20:31:50,517 | INFO     | current chi2=0.6958086405946754 (change=0.1678516637470831 %)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,517 | INFO     | left removable region: 10
[2026-04-22 22:32:54] 2026-04-22 20:31:50,517 | INFO     | sum of square deviations: 3972995422.5
[2026-04-22 22:32:54] 2026-04-22 20:31:50,519 | INFO     | sum of deviations: -1716456064.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,519 | INFO     | mean x (centered): 0.0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,520 | INFO     | mean y: 2381320.0427350425
[2026-04-22 22:32:54] 2026-04-22 20:31:50,520 | INFO     | intersect: 2381320.0427350425
[2026-04-22 22:32:54] 2026-04-22 20:31:50,520 | INFO     | chi2: 0.0009634363742804811
[2026-04-22 22:32:54] 2026-04-22 20:31:50,520 | INFO     | current memory leak: -0.43 B/s (using 234 data points, chi2=0.00)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,521 | INFO     | could have reported an average CPU frequency of 2767 MHz (12 samples)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,521 | INFO     | ..............................
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . Timing measurements:
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . get job = 0 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . initial setup = 0 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . payload setup = 10 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . stage-in = 0 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . payload execution = 15535 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,522 | INFO     | . stage-out = 2 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,523 | INFO     | . log creation = 0 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,523 | INFO     | ..............................
[2026-04-22 22:32:54] 2026-04-22 20:31:50,656 | INFO     | 
[2026-04-22 22:32:54] 2026-04-22 20:31:50,656 | INFO     | job summary report
[2026-04-22 22:32:54] 2026-04-22 20:31:50,656 | INFO     | --------------------------------------------------
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | PanDA job id: 7105217185
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | task id: 49820375
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | errors: (none)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | pilot state: finished 
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | transexitcode: 0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | exeerrorcode: 0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | exeerrordiag: 
[2026-04-22 22:32:54] 2026-04-22 20:31:50,657 | INFO     | exitcode: 0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | exitmsg: OK
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | cpuconsumptiontime: 60667 s
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | nevents: 400
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | neventsw: 0
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | pid: 1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | pgrp: 1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | corecount: 4
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | event service: False
[2026-04-22 22:32:54] 2026-04-22 20:31:50,658 | INFO     | sizes: {0: 2276427, 11: 2276427, 15548: 2308502, 15551: 2317582, 15553: 2317720}
[2026-04-22 22:32:54] 2026-04-22 20:31:50,659 | INFO     | --------------------------------------------------
[2026-04-22 22:32:54] 2026-04-22 20:31:50,659 | INFO     | 
[2026-04-22 22:32:54] 2026-04-22 20:31:50,659 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot104/slots/12
[2026-04-22 22:32:54] 2026-04-22 20:31:50,691 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,691 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,694 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-22 22:32:54] 2026-04-22 20:31:50,694 | INFO     | job 7105217185 has completed (purged errors)
[2026-04-22 22:32:54] 2026-04-22 20:31:50,694 | INFO     | overall cleanup function is called
[2026-04-22 22:32:54] 2026-04-22 20:31:51,196 | INFO     | number of running child processes to parent process 1000536: 1
[2026-04-22 22:32:54] 2026-04-22 20:31:51,196 | INFO     | maximum number of monitored processes: 6
[2026-04-22 22:32:54] 2026-04-22 20:31:51,197 | INFO     | aborting job monitoring since job object (job id=7105217185) has expired
[2026-04-22 22:32:54] 2026-04-22 20:31:51,706 | INFO     | --- collectZombieJob: --- 10, [1000536]
[2026-04-22 22:32:54] 2026-04-22 20:31:51,707 | INFO     | zombie collector waiting for pid 1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:51,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-22 22:32:54] 2026-04-22 20:31:51,707 | INFO     | collected zombie processes
[2026-04-22 22:32:54] 2026-04-22 20:31:51,707 | INFO     | will attempt to kill all subprocesses of pid=1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:52,625 | INFO     | process IDs to be killed: [1000536] (in reverse order)
[2026-04-22 22:32:54] 2026-04-22 20:31:52,954 | WARNING  | found no corresponding commands to process id(s)
[2026-04-22 22:32:54] 2026-04-22 20:31:52,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-22 22:32:54] 2026-04-22 20:31:52,989 | INFO     | did not find any defunct processes belonging to 1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:53,020 | INFO     | did not find any defunct processes belonging to 1000536
[2026-04-22 22:32:54] 2026-04-22 20:31:53,021 | INFO     | Ready for new job
[2026-04-22 22:32:54] 2026-04-22 20:31:53,024 | INFO     | **************************************
[2026-04-22 22:32:54] 2026-04-22 20:31:53,026 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-22 22:32:54] 2026-04-22 20:31:53,027 | INFO     | **************************************
[2026-04-22 22:32:54] 2026-04-22 20:31:53,027 | INFO     | 
[2026-04-22 22:32:54] 2026-04-22 20:31:53,038 | INFO     | architecture information:
[2026-04-22 22:32:54] 2026-04-22 20:31:53,039 | INFO     | executing command: cat /etc/os-release
[2026-04-22 22:32:54] 2026-04-22 20:31:53,068 | INFO     | cat /etc/os-release:
[2026-04-22 22:32:54] NAME="CentOS Linux"
[2026-04-22 22:32:54] VERSION="7 (Core)"
[2026-04-22 22:32:54] ID="centos"
[2026-04-22 22:32:54] ID_LIKE="rhel fedora"
[2026-04-22 22:32:54] VERSION_ID="7"
[2026-04-22 22:32:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-22 22:32:54] ANSI_COLOR="0;31"
[2026-04-22 22:32:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-22 22:32:54] HOME_URL="https://www.centos.org/"
[2026-04-22 22:32:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-22 22:32:54] 
[2026-04-22 22:32:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-22 22:32:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-22 22:32:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-22 22:32:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-22 22:32:54] 
[2026-04-22 22:32:54] 2026-04-22 20:31:53,069 | INFO     | **************************************
[2026-04-22 22:32:54] 2026-04-22 20:31:53,573 | INFO     | executing command: df -mP /var/lib/boinc/var/slot104/slots/12
[2026-04-22 22:32:54] 2026-04-22 20:31:53,605 | INFO     | sufficient remaining disk space (213883289600 B)
[2026-04-22 22:32:54] 2026-04-22 20:31:53,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-22 22:32:54] 2026-04-22 20:31:53,606 | INFO     | current server update state: UPDATING_FINAL
[2026-04-22 22:32:54] 2026-04-22 20:31:53,606 | INFO     | update_server=False
[2026-04-22 22:32:54] 2026-04-22 20:31:53,606 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-22 22:32:54] 2026-04-22 20:31:53,700 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-22 22:32:54] 2026-04-22 20:31:53,701 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-22 22:32:54] 2026-04-22 20:31:53,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-22 22:32:54] 2026-04-22 20:31:53,701 | INFO     | will abort loop
[2026-04-22 22:32:54] 2026-04-22 20:31:53,840 | INFO     | all payload control threads have been joined
[2026-04-22 22:32:54] 2026-04-22 20:31:54,086 | INFO     | all job control threads have been joined
[2026-04-22 22:32:54] 2026-04-22 20:31:54,117 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-22 22:32:54] 2026-04-22 20:31:54,488 | INFO     | all data control threads have been joined
[2026-04-22 22:32:54] 2026-04-22 20:31:54,612 | INFO     | [job] retrieve thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:54,624 | INFO     | [payload] failed_post thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:54,707 | INFO     | [job] job monitor thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:54,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-22 22:32:54] 2026-04-22 20:31:54,846 | INFO     | [payload] control thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:54,859 | INFO     | [payload] execute_payloads thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,092 | INFO     | [job] control thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,228 | INFO     | [job] validate thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,361 | INFO     | [job] create_data_payload thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,466 | INFO     | [payload] validate_post thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,494 | INFO     | [data] control thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,519 | INFO     | [payload] validate_pre thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:55,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-22 22:32:54] 2026-04-22 20:31:55,896 | INFO     | [data] copytool_in thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:56,123 | INFO     | [data] copytool_out thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:56,672 | INFO     | [job] queue monitor thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:31:58,753 | INFO     | [data] queue_monitor thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:32:04,115 | INFO     | job.realtimelogging is not enabled
[2026-04-22 22:32:54] 2026-04-22 20:32:05,120 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-22 22:32:54] 2026-04-22 20:32:24,546 | INFO     | PID=985933 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-22 22:32:54] 2026-04-22 20:32:24,546 | INFO     | .. there are 10 such processes running
[2026-04-22 22:32:54] 2026-04-22 20:32:24,546 | INFO     | found 0 job(s) in 20 queues
[2026-04-22 22:32:54] 2026-04-22 20:32:24,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-22 22:32:54] 2026-04-22 20:32:24,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-22 22:32:54] 2026-04-22 20:32:47,943 | INFO     | [monitor] cgroup control has ended
[2026-04-22 22:32:54] 2026-04-22 20:32:49,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22913133115200)>', '<ExcThread(monitor, started 22912898971392)>']
[2026-04-22 22:32:54] 2026-04-22 20:32:49,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-22 22:32:54] 2026-04-22 20:32:49,670 | INFO     | [monitor] control thread has ended
[2026-04-22 22:32:54] 2026-04-22 20:32:54,124 | INFO     | all workflow threads have been joined
[2026-04-22 22:32:54] 2026-04-22 20:32:54,124 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-22 22:32:54] 2026-04-22 20:32:54,125 | INFO     | traces error code: 0
[2026-04-22 22:32:54] 2026-04-22 20:32:54,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-22 22:32:54] 2026-04-22 20:32:54,290 [wrapper] ==== pilot stdout END ====
[2026-04-22 22:32:54] 2026-04-22 20:32:54,296 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-22 22:32:54] 2026-04-22 20:32:54,301 [wrapper] pilotpid: 985933
[2026-04-22 22:32:54] 2026-04-22 20:32:54,305 [wrapper] Pilot exit status: 0
[2026-04-22 22:32:54] 2026-04-22 20:32:54,328 [wrapper] pandaids: 7105217185 7105217185
[2026-04-22 22:32:54] 2026-04-22 20:32:54,558 [wrapper] cleanup supervisor_pilot 1312508 985935
[2026-04-22 22:32:54] 2026-04-22 20:32:54,563 [wrapper] Test setup, not cleaning
[2026-04-22 22:32:54] 2026-04-22 20:32:54,567 [wrapper] apfmon messages muted
[2026-04-22 22:32:54] 2026-04-22 20:32:54,572 [wrapper] ==== wrapper stdout END ====
[2026-04-22 22:32:54] 2026-04-22 20:32:54,577 [wrapper] ==== wrapper stderr END ====
[2026-04-22 22:32:54]  *** Error codes and diagnostics ***
[2026-04-22 22:32:54]     "exeErrorCode": 0,
[2026-04-22 22:32:54]     "pilotErrorCode": 0,
[2026-04-22 22:32:54]  *** Listing of results directory ***
[2026-04-22 22:32:54] total 4638348
[2026-04-22 22:32:54] drwx------. 5 boinc boinc       4096 Apr  1 13:59 pilot3
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc     650909 Apr 16 18:02 pilot3.tar.gz
[2026-04-22 22:32:54] -rwx------. 1 boinc boinc      36322 Apr 21 09:45 runpilot2-wrapper.sh
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc       5094 Apr 21 11:14 queuedata.json
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc        100 Apr 22 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-22 22:32:54] -rwxr-xr-x. 1 boinc boinc       7986 Apr 22 16:57 run_atlas
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc        105 Apr 22 16:57 job.xml
[2026-04-22 22:32:54] -rw-r--r--. 3 boinc boinc 2233515068 Apr 22 16:58 EVNT.49820373._000038.pool.root.1
[2026-04-22 22:32:54] -rw-r--r--. 3 boinc boinc 2233515068 Apr 22 16:58 ATLAS.root_0
[2026-04-22 22:32:54] -rw-r--r--. 2 boinc boinc      15665 Apr 22 16:58 start_atlas.sh
[2026-04-22 22:32:54] drwxrwx--x. 2 boinc boinc       4096 Apr 22 16:58 shared
[2026-04-22 22:32:54] -rw-r--r--. 2 boinc boinc     664483 Apr 22 16:58 input.tar.gz
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc          0 Apr 22 16:58 boinc_lockfile
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc       2586 Apr 22 18:12 pandaJob.out
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc     997117 Apr 22 18:12 agis_schedconf.cvmfs.json
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc        441 Apr 22 18:12 workernode_map.json
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc       6621 Apr 22 18:12 init_data.xml
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc  274958231 Apr 22 22:30 HITS.49820375._010309.pool.root.1
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc        489 Apr 22 22:31 boinc_task_state.xml
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc       1027 Apr 22 22:31 memory_monitor_summary.json
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc    1509089 Apr 22 22:31 agis_ddmendpoints.agis.ALL.json
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc     397000 Apr 22 22:31 log.49820375._010309.job.log.tgz.1
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc         96 Apr 22 22:31 pilot_heartbeat.json
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc       6372 Apr 22 22:31 heartbeat_new.json
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc       6263 Apr 22 22:31 heartbeat.json
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc         28 Apr 22 22:32 wrapper_checkpoint.txt
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc       8192 Apr 22 22:32 boinc_mmap_file
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc       5089 Apr 22 22:32 pilotlog.txt
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc    1407233 Apr 22 22:32 log.49820375._010309.job.log.1
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc        357 Apr 22 22:32 output.list
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc        410 Apr 22 22:32 runtime_log
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc    1822720 Apr 22 22:32 result.tar.gz
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc       8938 Apr 22 22:32 runtime_log.err
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc        790 Apr 22 22:32 2b020d30c6ce.diag
[2026-04-22 22:32:54] -rw-r--r--. 1 boinc boinc      22644 Apr 22 22:32 stderr.txt
[2026-04-22 22:32:54] HITS file was successfully produced:
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc 274958231 Apr 22 22:30 shared/HITS.pool.root.1
[2026-04-22 22:32:54]  *** Contents of shared directory: ***
[2026-04-22 22:32:54] total 2452140
[2026-04-22 22:32:54] -rw-r--r--. 3 boinc boinc 2233515068 Apr 22 16:58 ATLAS.root_0
[2026-04-22 22:32:54] -rw-r--r--. 2 boinc boinc      15665 Apr 22 16:58 start_atlas.sh
[2026-04-22 22:32:54] -rw-r--r--. 2 boinc boinc     664483 Apr 22 16:58 input.tar.gz
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc  274958231 Apr 22 22:30 HITS.pool.root.1
[2026-04-22 22:32:54] -rw-------. 1 boinc boinc    1822720 Apr 22 22:32 result.tar.gz
22:33:16 (973329): run_atlas exited; CPU time 61970.447003
22:33:16 (973329): called boinc_finish(0)

</stderr_txt>
]]>

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