Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:43:26 (2597730): wrapper (7.7.26015): starting
05:43:26 (2597730): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 05:43:26] Arguments: --nthreads 8
[2026-04-21 05:43:26] Threads: 8
[2026-04-21 05:43:26] Checking for CVMFS
[2026-04-21 05:43:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 05:43:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 05:43:28] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 05:43:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 05:43:28] 2.13.3.0 15551 238423 263032 158685 0 476 18349025 32935936 15451 16776704 0 609509737 99.514 860451261 38917 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 05:43:28] CVMFS is ok
[2026-04-21 05:43:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 05:43:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 05:43:28] Further information can be found at the LHC@home message board.
[2026-04-21 05:43:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 05:43:28] Checking for apptainer binary...
[2026-04-21 05:43:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 05:43:28] Running /usr/bin/apptainer --version
[2026-04-21 05:43:28] apptainer version 1.4.5-2.el9
[2026-04-21 05:43:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 05:43:29] c6-5-7-3.aglt2.org
[2026-04-21 05:43:29] apptainer works
[2026-04-21 05:43:29] Set ATHENA_PROC_NUMBER=8
[2026-04-21 05:43:29] Set ATHENA_CORE_NUMBER=8
[2026-04-21 05:43:29] Starting ATLAS job with PandaID=7104802139
[2026-04-21 05:43:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:20:09 (2597730): BOINC client no longer exists - exiting
08:20:09 (2597730): timer handler: client dead, exiting
08:27:20 (3565185): wrapper (7.7.26015): starting
08:27:20 (3565185): wrapper: running run_atlas (--nthreads 9)
[2026-04-21 08:27:20] Arguments: --nthreads 9
[2026-04-21 08:27:20] Threads: 9
[2026-04-21 08:27:20] This job has been restarted, cleaning up previous attempt
[2026-04-21 08:27:20] Checking for CVMFS
[2026-04-21 08:27:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 08:27:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 08:27:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 08:27:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 08:27:20] 2.13.3.0 15551 238587 255876 158690 1 293 22935451 32935936 11508 16776704 0 621758295 99.521 861875155 38913 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 08:27:20] CVMFS is ok
[2026-04-21 08:27:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 08:27:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 08:27:20] Further information can be found at the LHC@home message board.
[2026-04-21 08:27:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 08:27:20] Checking for apptainer binary...
[2026-04-21 08:27:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 08:27:20] Running /usr/bin/apptainer --version
[2026-04-21 08:27:20] apptainer version 1.4.5-2.el9
[2026-04-21 08:27:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 08:27:20] c6-5-7-3.aglt2.org
[2026-04-21 08:27:20] apptainer works
[2026-04-21 08:27:20] Set ATHENA_PROC_NUMBER=9
[2026-04-21 08:27:20] Set ATHENA_CORE_NUMBER=9
[2026-04-21 08:27:20] Starting ATLAS job with PandaID=7104802139
[2026-04-21 08:27:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 12:38:11]  *** The last 200 lines of the pilot log: ***
[2026-04-21 12:38:11] 2026-04-21 16:37:06,022 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-04-21 12:38:11] 2026-04-21 16:37:06,023 | INFO     | this job has now completed (state=finished)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,023 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,023 | INFO     | log transfer has been attempted: DONE
[2026-04-21 12:38:11] 2026-04-21 16:37:06,023 | INFO     | job 7104802139 has finished - writing final server update
[2026-04-21 12:38:11] 2026-04-21 16:37:06,023 | INFO     | total number of processed events: 400 (read)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,282 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7104802139/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,283 | INFO     | extracted standard info from prmon json
[2026-04-21 12:38:11] 2026-04-21 16:37:06,283 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 12:38:11] 2026-04-21 16:37:06,317 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 12:38:11] 2026-04-21 16:37:06,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 12:38:11] 2026-04-21 16:37:06,336 | INFO     | fitting pss+swap vs Time
[2026-04-21 12:38:11] 2026-04-21 16:37:06,353 | INFO     | sum of square deviations: 4560360350.424512
[2026-04-21 12:38:11] 2026-04-21 16:37:06,354 | INFO     | sum of deviations: 12923563192.457155
[2026-04-21 12:38:11] 2026-04-21 16:37:06,355 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,355 | INFO     | mean y: 2617943.257142857
[2026-04-21 12:38:11] 2026-04-21 16:37:06,355 | INFO     | intersect: 2617943.257142857
[2026-04-21 12:38:11] 2026-04-21 16:37:06,355 | INFO     | chi2: 2.2340762526945905
[2026-04-21 12:38:11] 2026-04-21 16:37:06,355 | INFO     | sum of square deviations: 4286852819.933343
[2026-04-21 12:38:11] 2026-04-21 16:37:06,393 | INFO     | sum of deviations: 28667069341.366722
[2026-04-21 12:38:11] 2026-04-21 16:37:06,394 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,394 | INFO     | mean y: 2626571.7583333333
[2026-04-21 12:38:11] 2026-04-21 16:37:06,394 | INFO     | intersect: 2626571.7583333333
[2026-04-21 12:38:11] 2026-04-21 16:37:06,394 | INFO     | chi2: 1.5453003818040625
[2026-04-21 12:38:11] 2026-04-21 16:37:06,394 | INFO     | current chi2=1.5453003818040625 (change=30.83045487188602 %)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,395 | INFO     | sum of square deviations: 4024435691.548938
[2026-04-21 12:38:11] 2026-04-21 16:37:06,440 | INFO     | sum of deviations: 27952390054.434036
[2026-04-21 12:38:11] 2026-04-21 16:37:06,440 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,440 | INFO     | mean y: 2626156.331914894
[2026-04-21 12:38:11] 2026-04-21 16:37:06,440 | INFO     | intersect: 2626156.331914894
[2026-04-21 12:38:11] 2026-04-21 16:37:06,440 | INFO     | chi2: 1.5460424043942056
[2026-04-21 12:38:11] 2026-04-21 16:37:06,441 | INFO     | current chi2=1.5460424043942056 (change=-0.048018016359824806 %)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,441 | INFO     | right removable region: 234
[2026-04-21 12:38:11] 2026-04-21 16:37:06,441 | INFO     | sum of square deviations: 4286806459.933343
[2026-04-21 12:38:11] 2026-04-21 16:37:06,442 | INFO     | sum of deviations: -27381733217.783333
[2026-04-21 12:38:11] 2026-04-21 16:37:06,443 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,443 | INFO     | mean y: 2640225.595833333
[2026-04-21 12:38:11] 2026-04-21 16:37:06,503 | INFO     | intersect: 2640225.595833333
[2026-04-21 12:38:11] 2026-04-21 16:37:06,504 | INFO     | chi2: 0.8130085241939449
[2026-04-21 12:38:11] 2026-04-21 16:37:06,504 | INFO     | current chi2=0.8130085241939449 (change=63.60873881483009 %)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,504 | INFO     | sum of square deviations: 4024415569.4212894
[2026-04-21 12:38:11] 2026-04-21 16:37:06,506 | INFO     | sum of deviations: -34773341279.54471
[2026-04-21 12:38:11] 2026-04-21 16:37:06,506 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,506 | INFO     | mean y: 2644484.480851064
[2026-04-21 12:38:11] 2026-04-21 16:37:06,506 | INFO     | intersect: 2644484.480851064
[2026-04-21 12:38:11] 2026-04-21 16:37:06,507 | INFO     | chi2: 0.7521222575805191
[2026-04-21 12:38:11] 2026-04-21 16:37:06,539 | INFO     | current chi2=0.7521222575805191 (change=7.489007163091101 %)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,539 | INFO     | left removable region: 10
[2026-04-21 12:38:11] 2026-04-21 16:37:06,540 | INFO     | sum of square deviations: 3485321716.125
[2026-04-21 12:38:11] 2026-04-21 16:37:06,541 | INFO     | sum of deviations: -18375159543.312508
[2026-04-21 12:38:11] 2026-04-21 16:37:06,541 | INFO     | mean x (centered): 0.0
[2026-04-21 12:38:11] 2026-04-21 16:37:06,541 | INFO     | mean y: 2654278.3973214286
[2026-04-21 12:38:11] 2026-04-21 16:37:06,541 | INFO     | intersect: 2654278.3973214286
[2026-04-21 12:38:11] 2026-04-21 16:37:06,542 | INFO     | chi2: 0.04720149624860389
[2026-04-21 12:38:11] 2026-04-21 16:37:06,542 | INFO     | current memory leak: -5.27 B/s (using 224 data points, chi2=0.05)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,543 | INFO     | could have reported an average CPU frequency of 3050 MHz (12 samples)
[2026-04-21 12:38:11] 2026-04-21 16:37:06,543 | INFO     | ..............................
[2026-04-21 12:38:11] 2026-04-21 16:37:06,543 | INFO     | . Timing measurements:
[2026-04-21 12:38:11] 2026-04-21 16:37:06,544 | INFO     | . get job = 0 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,544 | INFO     | . initial setup = 1 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,544 | INFO     | . payload setup = 11 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,545 | INFO     | . stage-in = 0 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,545 | INFO     | . payload execution = 14930 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,545 | INFO     | . stage-out = 6 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,545 | INFO     | . log creation = 2 s
[2026-04-21 12:38:11] 2026-04-21 16:37:06,546 | INFO     | ..............................
[2026-04-21 12:38:11] 2026-04-21 16:37:07,260 | INFO     | 
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | job summary report
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | --------------------------------------------------
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | PanDA job id: 7104802139
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | task id: 49820244
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | errors: (none)
[2026-04-21 12:38:11] 2026-04-21 16:37:07,261 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | pilot state: finished 
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | transexitcode: 0
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | exeerrorcode: 0
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | exeerrordiag: 
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | exitcode: 0
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | exitmsg: OK
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | cpuconsumptiontime: 68709 s
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | nevents: 400
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | neventsw: 0
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | pid: 3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | pgrp: 3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | corecount: 9
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | event service: False
[2026-04-21 12:38:11] 2026-04-21 16:37:07,262 | INFO     | sizes: {0: 2281783, 1: 2283385, 11: 2283385, 14946: 2314282, 14947: 2314281, 14955: 2316357, 14958: 2316541, 14962: 2316735}
[2026-04-21 12:38:11] 2026-04-21 16:37:07,263 | INFO     | --------------------------------------------------
[2026-04-21 12:38:11] 2026-04-21 16:37:07,263 | INFO     | 
[2026-04-21 12:38:11] 2026-04-21 16:37:07,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-21 12:38:11] 2026-04-21 16:37:07,422 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | job 7104802139 has completed (purged errors)
[2026-04-21 12:38:11] 2026-04-21 16:37:07,424 | INFO     | overall cleanup function is called
[2026-04-21 12:38:11] 2026-04-21 16:37:08,449 | INFO     | --- collectZombieJob: --- 10, [3586582]
[2026-04-21 12:38:11] 2026-04-21 16:37:08,449 | INFO     | zombie collector waiting for pid 3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:08,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 12:38:11] 2026-04-21 16:37:08,449 | INFO     | collected zombie processes
[2026-04-21 12:38:11] 2026-04-21 16:37:08,449 | INFO     | will attempt to kill all subprocesses of pid=3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:09,806 | INFO     | process IDs to be killed: [3586582] (in reverse order)
[2026-04-21 12:38:11] 2026-04-21 16:37:10,595 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 12:38:11] 2026-04-21 16:37:10,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 12:38:11] 2026-04-21 16:37:10,634 | INFO     | did not find any defunct processes belonging to 3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:10,665 | INFO     | did not find any defunct processes belonging to 3586582
[2026-04-21 12:38:11] 2026-04-21 16:37:10,666 | INFO     | Ready for new job
[2026-04-21 12:38:11] 2026-04-21 16:37:10,668 | INFO     | **************************************
[2026-04-21 12:38:11] 2026-04-21 16:37:10,672 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 12:38:11] 2026-04-21 16:37:10,672 | INFO     | **************************************
[2026-04-21 12:38:11] 2026-04-21 16:37:10,672 | INFO     | 
[2026-04-21 12:38:11] 2026-04-21 16:37:10,675 | INFO     | architecture information:
[2026-04-21 12:38:11] 2026-04-21 16:37:10,679 | INFO     | executing command: cat /etc/os-release
[2026-04-21 12:38:11] 2026-04-21 16:37:10,730 | INFO     | cat /etc/os-release:
[2026-04-21 12:38:11] NAME="CentOS Linux"
[2026-04-21 12:38:11] VERSION="7 (Core)"
[2026-04-21 12:38:11] ID="centos"
[2026-04-21 12:38:11] ID_LIKE="rhel fedora"
[2026-04-21 12:38:11] VERSION_ID="7"
[2026-04-21 12:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 12:38:11] ANSI_COLOR="0;31"
[2026-04-21 12:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 12:38:11] HOME_URL="https://www.centos.org/"
[2026-04-21 12:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 12:38:11] 
[2026-04-21 12:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 12:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 12:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 12:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 12:38:11] 
[2026-04-21 12:38:11] 2026-04-21 16:37:10,732 | INFO     | **************************************
[2026-04-21 12:38:11] 2026-04-21 16:37:11,241 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-21 12:38:11] 2026-04-21 16:37:11,398 | INFO     | sufficient remaining disk space (58368983040 B)
[2026-04-21 12:38:11] 2026-04-21 16:37:11,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 12:38:11] 2026-04-21 16:37:11,399 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 12:38:11] 2026-04-21 16:37:11,399 | INFO     | update_server=False
[2026-04-21 12:38:11] 2026-04-21 16:37:11,399 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 12:38:11] 2026-04-21 16:37:11,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 12:38:11] 2026-04-21 16:37:11,427 | INFO     | all data control threads have been joined
[2026-04-21 12:38:11] 2026-04-21 16:37:11,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 12:38:11] 2026-04-21 16:37:11,813 | INFO     | aborting loop
[2026-04-21 12:38:11] 2026-04-21 16:37:12,035 | INFO     | all payload control threads have been joined
[2026-04-21 12:38:11] 2026-04-21 16:37:12,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 12:38:11] 2026-04-21 16:37:12,404 | INFO     | [job] retrieve thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:12,411 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:12,433 | INFO     | [data] control thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:12,602 | INFO     | [payload] failed_post thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:12,735 | INFO     | all job control threads have been joined
[2026-04-21 12:38:11] 2026-04-21 16:37:12,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:12,819 | INFO     | [job] job monitor thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,040 | INFO     | [payload] control thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,332 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,355 | INFO     | [job] queue monitor thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,420 | INFO     | [data] copytool_out thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,552 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,678 | INFO     | [job] validate thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,741 | INFO     | [job] control thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,777 | INFO     | [payload] validate_post thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:13,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 12:38:11] 2026-04-21 16:37:13,909 | INFO     | [data] copytool_in thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:17,870 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 12:38:11] 2026-04-21 16:37:42,881 | INFO     | PID=3577532 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 12:38:11] 2026-04-21 16:37:42,912 | INFO     | .. there are 24 such processes running
[2026-04-21 12:38:11] 2026-04-21 16:37:42,913 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 12:38:11] 2026-04-21 16:37:42,913 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 12:38:11] 2026-04-21 16:37:42,913 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 12:38:11] 2026-04-21 16:38:00,726 | INFO     | [monitor] cgroup control has ended
[2026-04-21 12:38:11] 2026-04-21 16:38:02,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278263351104)>', '<ExcThread(monitor, started 140277767456512)>']
[2026-04-21 12:38:11] 2026-04-21 16:38:03,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 12:38:11] 2026-04-21 16:38:03,093 | INFO     | [monitor] control thread has ended
[2026-04-21 12:38:11] 2026-04-21 16:38:07,740 | INFO     | all workflow threads have been joined
[2026-04-21 12:38:11] 2026-04-21 16:38:07,740 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 12:38:11] 2026-04-21 16:38:07,740 | INFO     | traces error code: 0
[2026-04-21 12:38:11] 2026-04-21 16:38:07,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 12:38:11] 2026-04-21 16:38:09,673 [wrapper] ==== pilot stdout END ====
[2026-04-21 12:38:11] 2026-04-21 16:38:09,732 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 12:38:11] 2026-04-21 16:38:09,752 [wrapper] pilotpid: 3577532
[2026-04-21 12:38:11] 2026-04-21 16:38:09,782 [wrapper] Pilot exit status: 0
[2026-04-21 12:38:11] 2026-04-21 16:38:09,902 [wrapper] pandaids: 7104802139 7104802139
[2026-04-21 12:38:11] 2026-04-21 16:38:10,037 [wrapper] cleanup supervisor_pilot  247502 3577533
[2026-04-21 12:38:11] 2026-04-21 16:38:10,054 [wrapper] Test setup, not cleaning
[2026-04-21 12:38:11] 2026-04-21 16:38:10,075 [wrapper] apfmon messages muted
[2026-04-21 12:38:11] 2026-04-21 16:38:10,105 [wrapper] ==== wrapper stdout END ====
[2026-04-21 12:38:11] 2026-04-21 16:38:10,160 [wrapper] ==== wrapper stderr END ====
[2026-04-21 12:38:11]  *** Error codes and diagnostics ***
[2026-04-21 12:38:11]     "exeErrorCode": 0,
[2026-04-21 12:38:11]     "pilotErrorCode": 0,
[2026-04-21 12:38:11]  *** Listing of results directory ***
[2026-04-21 12:38:11] total 4664868
[2026-04-21 12:38:11] drwx------. 5 boincer umatlas       4096 Apr  1 08:07 pilot3
[2026-04-21 12:38:11] -rwx------. 1 boincer umatlas      36322 Apr 21 03:44 runpilot2-wrapper.sh
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 04:49 pilot3.tar.gz
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:07 queuedata.json
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas        100 Apr 21 05:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 12:38:11] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 05:43 run_atlas
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas        105 Apr 21 05:43 job.xml
[2026-04-21 12:38:11] -rw-r--r--. 3 boincer umatlas 2247923933 Apr 21 05:43 EVNT.49820242._000016.pool.root.1
[2026-04-21 12:38:11] -rw-r--r--. 3 boincer umatlas 2247923933 Apr 21 05:43 ATLAS.root_0
[2026-04-21 12:38:11] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:43 start_atlas.sh
[2026-04-21 12:38:11] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 05:43 shared
[2026-04-21 12:38:11] -rw-r--r--. 2 boincer umatlas     656921 Apr 21 05:43 input.tar.gz
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas          0 Apr 21 05:43 boinc_lockfile
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 08:27 pandaJob.out
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas         57 Apr 21 08:27 setup.sh.local
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas     993801 Apr 21 08:27 agis_schedconf.cvmfs.json
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas        440 Apr 21 08:27 workernode_map.json
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas       6758 Apr 21 12:30 init_data.xml
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas  273368803 Apr 21 12:35 HITS.49820244._011877.pool.root.1
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas        490 Apr 21 12:35 boinc_task_state.xml
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas       1054 Apr 21 12:36 memory_monitor_summary.json
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas    1509089 Apr 21 12:36 agis_ddmendpoints.agis.ALL.json
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas     565136 Apr 21 12:36 log.49820244._011877.job.log.tgz.1
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas       6431 Apr 21 12:37 heartbeat_new.json
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas       6322 Apr 21 12:37 heartbeat.json
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas         96 Apr 21 12:37 pilot_heartbeat.json
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas         28 Apr 21 12:38 wrapper_checkpoint.txt
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas       4819 Apr 21 12:38 pilotlog.txt
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas    1207672 Apr 21 12:38 log.49820244._011877.job.log.1
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 12:38 boinc_mmap_file
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas        357 Apr 21 12:38 output.list
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas        410 Apr 21 12:38 runtime_log
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas    1792000 Apr 21 12:38 result.tar.gz
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas       9049 Apr 21 12:38 runtime_log.err
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas        786 Apr 21 12:38 2ae1d0e1801a.diag
[2026-04-21 12:38:11] -rw-r--r--. 1 boincer umatlas      23351 Apr 21 12:38 stderr.txt
[2026-04-21 12:38:11] HITS file was successfully produced:
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas 273368803 Apr 21 12:35 shared/HITS.pool.root.1
[2026-04-21 12:38:11]  *** Contents of shared directory: ***
[2026-04-21 12:38:11] total 2464624
[2026-04-21 12:38:11] -rw-r--r--. 3 boincer umatlas 2247923933 Apr 21 05:43 ATLAS.root_0
[2026-04-21 12:38:11] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:43 start_atlas.sh
[2026-04-21 12:38:11] -rw-r--r--. 2 boincer umatlas     656921 Apr 21 05:43 input.tar.gz
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas  273368803 Apr 21 12:35 HITS.pool.root.1
[2026-04-21 12:38:11] -rw-------. 1 boincer umatlas    1792000 Apr 21 12:38 result.tar.gz
12:38:12 (3565185): run_atlas exited; CPU time 69213.866917
12:38:12 (3565185): called boinc_finish(0)

</stderr_txt>
]]>

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