Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:25:42 (2894757): wrapper (7.7.26015): starting
05:25:42 (2894757): wrapper: running run_atlas (--nthreads 11)
[2026-04-21 05:25:42] Arguments: --nthreads 11
[2026-04-21 05:25:42] Threads: 11
[2026-04-21 05:25:42] Checking for CVMFS
[2026-04-21 05:25:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 05:25:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 05:25:43] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 05:25:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 05:25:43] 2.13.3.0 2758065 108795 496264 158685 0 302 27229271 32935797 19496 16776704 0 501221730 99.661 511572020 29445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 05:25:43] CVMFS is ok
[2026-04-21 05:25:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 05:25:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 05:25:43] Further information can be found at the LHC@home message board.
[2026-04-21 05:25:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 05:25:43] Checking for apptainer binary...
[2026-04-21 05:25:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 05:25:43] Running /usr/bin/apptainer --version
[2026-04-21 05:25:43] apptainer version 1.4.5-2.el9
[2026-04-21 05:25:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 05:25:44] c6-12-29-1.aglt2.org
[2026-04-21 05:25:44] apptainer works
[2026-04-21 05:25:44] Set ATHENA_PROC_NUMBER=11
[2026-04-21 05:25:44] Set ATHENA_CORE_NUMBER=11
[2026-04-21 05:25:44] Starting ATLAS job with PandaID=7105214734
[2026-04-21 05:25:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:20:04 (2894757): BOINC client no longer exists - exiting
06:20:04 (2894757): timer handler: client dead, exiting
06:30:20 (3355929): wrapper (7.7.26015): starting
06:30:20 (3355929): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 06:30:20] Arguments: --nthreads 8
[2026-04-21 06:30:20] Threads: 8
[2026-04-21 06:30:20] This job has been restarted, cleaning up previous attempt
[2026-04-21 06:30:20] Checking for CVMFS
[2026-04-21 06:30:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 06:30:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 06:30:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 06:30:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 06:30:21] 2.13.3.0 2758065 108860 510432 158687 0 658 28689631 32935937 20160 16776704 0 504849923 99.663 512019596 29440 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 06:30:21] CVMFS is ok
[2026-04-21 06:30:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 06:30:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 06:30:21] Further information can be found at the LHC@home message board.
[2026-04-21 06:30:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 06:30:21] Checking for apptainer binary...
[2026-04-21 06:30:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 06:30:21] Running /usr/bin/apptainer --version
[2026-04-21 06:30:21] apptainer version 1.4.5-2.el9
[2026-04-21 06:30:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 06:30:21] c6-12-29-1.aglt2.org
[2026-04-21 06:30:21] apptainer works
[2026-04-21 06:30:21] Set ATHENA_PROC_NUMBER=8
[2026-04-21 06:30:21] Set ATHENA_CORE_NUMBER=8
[2026-04-21 06:30:21] Starting ATLAS job with PandaID=7105214734
[2026-04-21 06:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 14:42:42]  *** The last 200 lines of the pilot log: ***
[2026-04-21 14:42:42] 2026-04-21 18:41:55,604 | INFO     | job 7105214734 has finished - writing final server update
[2026-04-21 14:42:42] 2026-04-21 18:41:55,625 | INFO     | total number of processed events: 400 (read)
[2026-04-21 14:42:42] 2026-04-21 18:41:55,736 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7105214734/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 14:42:42] 2026-04-21 18:41:55,737 | INFO     | extracted standard info from prmon json
[2026-04-21 14:42:42] 2026-04-21 18:41:55,737 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 14:42:42] 2026-04-21 18:41:55,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 14:42:42] 2026-04-21 18:41:55,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 14:42:42] 2026-04-21 18:41:55,793 | INFO     | fitting pss+swap vs Time
[2026-04-21 14:42:42] 2026-04-21 18:41:55,794 | INFO     | sum of square deviations: 34938861841.03505
[2026-04-21 14:42:42] 2026-04-21 18:41:55,845 | INFO     | sum of deviations: 95918165585.01242
[2026-04-21 14:42:42] 2026-04-21 18:41:55,846 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:55,846 | INFO     | mean y: 2543022.6894409936
[2026-04-21 14:42:42] 2026-04-21 18:41:55,846 | INFO     | intersect: 2543022.6894409936
[2026-04-21 14:42:42] 2026-04-21 18:41:55,847 | INFO     | chi2: 2.3511557894423634
[2026-04-21 14:42:42] 2026-04-21 18:41:55,847 | INFO     | sum of square deviations: 33864989628.462456
[2026-04-21 14:42:42] 2026-04-21 18:41:55,892 | INFO     | sum of deviations: 124937198774.1987
[2026-04-21 14:42:42] 2026-04-21 18:41:55,892 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:55,892 | INFO     | mean y: 2547106.470711297
[2026-04-21 14:42:42] 2026-04-21 18:41:55,892 | INFO     | intersect: 2547106.470711297
[2026-04-21 14:42:42] 2026-04-21 18:41:55,893 | INFO     | chi2: 1.6612836135061577
[2026-04-21 14:42:42] 2026-04-21 18:41:55,893 | INFO     | current chi2=1.6612836135061577 (change=29.3418317507504 %)
[2026-04-21 14:42:42] 2026-04-21 18:41:55,894 | INFO     | sum of square deviations: 32813321476.130985
[2026-04-21 14:42:42] 2026-04-21 18:41:55,944 | INFO     | sum of deviations: 122433374793.54964
[2026-04-21 14:42:42] 2026-04-21 18:41:55,945 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:55,945 | INFO     | mean y: 2546743.376321353
[2026-04-21 14:42:42] 2026-04-21 18:41:55,945 | INFO     | intersect: 2546743.376321353
[2026-04-21 14:42:42] 2026-04-21 18:41:55,950 | INFO     | chi2: 1.6615007819350998
[2026-04-21 14:42:42] 2026-04-21 18:41:55,950 | INFO     | current chi2=1.6615007819350998 (change=-0.013072327155728815 %)
[2026-04-21 14:42:42] 2026-04-21 18:41:55,950 | INFO     | right removable region: 472
[2026-04-21 14:42:42] 2026-04-21 18:41:55,951 | INFO     | sum of square deviations: 33864954248.462437
[2026-04-21 14:42:42] 2026-04-21 18:41:55,976 | INFO     | sum of deviations: 9071681776.623432
[2026-04-21 14:42:42] 2026-04-21 18:41:55,977 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:55,977 | INFO     | mean y: 2555308.2133891215
[2026-04-21 14:42:42] 2026-04-21 18:41:55,977 | INFO     | intersect: 2555308.2133891215
[2026-04-21 14:42:42] 2026-04-21 18:41:55,977 | INFO     | chi2: 0.7607050203241619
[2026-04-21 14:42:42] 2026-04-21 18:41:55,978 | INFO     | current chi2=0.7607050203241619 (change=67.6454863714249 %)
[2026-04-21 14:42:42] 2026-04-21 18:41:56,001 | INFO     | sum of square deviations: 32813279630.888054
[2026-04-21 14:42:42] 2026-04-21 18:41:56,035 | INFO     | sum of deviations: -7665376182.778011
[2026-04-21 14:42:42] 2026-04-21 18:41:56,035 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,036 | INFO     | mean y: 2557727.530655391
[2026-04-21 14:42:42] 2026-04-21 18:41:56,036 | INFO     | intersect: 2557727.530655391
[2026-04-21 14:42:42] 2026-04-21 18:41:56,036 | INFO     | chi2: 0.7073535057105901
[2026-04-21 14:42:42] 2026-04-21 18:41:56,036 | INFO     | current chi2=0.7073535057105901 (change=7.01343006660281 %)
[2026-04-21 14:42:42] 2026-04-21 18:41:56,036 | INFO     | left removable region: 10
[2026-04-21 14:42:42] 2026-04-21 18:41:56,037 | INFO     | sum of square deviations: 30576758946.467453
[2026-04-21 14:42:42] 2026-04-21 18:41:56,049 | INFO     | sum of deviations: 20156802065.714294
[2026-04-21 14:42:42] 2026-04-21 18:41:56,050 | INFO     | mean x (centered): 0.0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,050 | INFO     | mean y: 2561803.619047619
[2026-04-21 14:42:42] 2026-04-21 18:41:56,050 | INFO     | intersect: 2561803.619047619
[2026-04-21 14:42:42] 2026-04-21 18:41:56,073 | INFO     | chi2: 0.009319513542796115
[2026-04-21 14:42:42] 2026-04-21 18:41:56,073 | INFO     | current memory leak: 0.66 B/s (using 462 data points, chi2=0.01)
[2026-04-21 14:42:42] 2026-04-21 18:41:56,074 | INFO     | could have reported an average CPU frequency of 2531 MHz (20 samples)
[2026-04-21 14:42:42] 2026-04-21 18:41:56,074 | INFO     | ..............................
[2026-04-21 14:42:42] 2026-04-21 18:41:56,074 | INFO     | . Timing measurements:
[2026-04-21 14:42:42] 2026-04-21 18:41:56,074 | INFO     | . get job = 0 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . initial setup = 1 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . payload setup = 15 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . stage-in = 0 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . payload execution = 29447 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . stage-out = 3 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | . log creation = 0 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,075 | INFO     | ..............................
[2026-04-21 14:42:42] 2026-04-21 18:41:56,972 | INFO     | 
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | job summary report
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | --------------------------------------------------
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | PanDA job id: 7105214734
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | task id: 49820244
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | errors: (none)
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | pilot state: finished 
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | transexitcode: 0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | exeerrorcode: 0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | exeerrordiag: 
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | exitcode: 0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,979 | INFO     | exitmsg: OK
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | cpuconsumptiontime: 78119 s
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | nevents: 400
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | neventsw: 0
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | pid: 3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | pgrp: 3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | corecount: 8
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | event service: False
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | sizes: {0: 2280899, 1: 2283385, 2: 2283385, 29466: 2321365, 29471: 2323385, 29472: 2323441, 29473: 2323763}
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | --------------------------------------------------
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | 
[2026-04-21 14:42:42] 2026-04-21 18:41:56,980 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-04-21 14:42:42] 2026-04-21 18:41:57,055 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 14:42:42] 2026-04-21 18:41:57,057 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,058 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 14:42:42] 2026-04-21 18:41:57,058 | INFO     | job 7105214734 has completed (purged errors)
[2026-04-21 14:42:42] 2026-04-21 18:41:57,058 | INFO     | overall cleanup function is called
[2026-04-21 14:42:42] 2026-04-21 18:41:58,066 | INFO     | --- collectZombieJob: --- 10, [3388306]
[2026-04-21 14:42:42] 2026-04-21 18:41:58,068 | INFO     | zombie collector waiting for pid 3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:58,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 14:42:42] 2026-04-21 18:41:58,068 | INFO     | collected zombie processes
[2026-04-21 14:42:42] 2026-04-21 18:41:58,068 | INFO     | will attempt to kill all subprocesses of pid=3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:58,538 | INFO     | PID=3375467 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-21 14:42:42] 2026-04-21 18:41:58,538 | INFO     | .. there are 27 such processes running
[2026-04-21 14:42:42] 2026-04-21 18:41:58,794 | INFO     | process IDs to be killed: [3388306] (in reverse order)
[2026-04-21 14:42:42] 2026-04-21 18:41:58,955 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 14:42:42] 2026-04-21 18:41:58,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 14:42:42] 2026-04-21 18:41:58,973 | INFO     | did not find any defunct processes belonging to 3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:58,990 | INFO     | did not find any defunct processes belonging to 3388306
[2026-04-21 14:42:42] 2026-04-21 18:41:58,990 | INFO     | Ready for new job
[2026-04-21 14:42:42] 2026-04-21 18:41:58,992 | INFO     | **************************************
[2026-04-21 14:42:42] 2026-04-21 18:41:58,992 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 14:42:42] 2026-04-21 18:41:58,992 | INFO     | **************************************
[2026-04-21 14:42:42] 2026-04-21 18:41:58,992 | INFO     | 
[2026-04-21 14:42:42] 2026-04-21 18:41:58,998 | INFO     | architecture information:
[2026-04-21 14:42:42] 2026-04-21 18:41:58,998 | INFO     | executing command: cat /etc/os-release
[2026-04-21 14:42:42] 2026-04-21 18:41:59,042 | INFO     | cat /etc/os-release:
[2026-04-21 14:42:42] NAME="CentOS Linux"
[2026-04-21 14:42:42] VERSION="7 (Core)"
[2026-04-21 14:42:42] ID="centos"
[2026-04-21 14:42:42] ID_LIKE="rhel fedora"
[2026-04-21 14:42:42] VERSION_ID="7"
[2026-04-21 14:42:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 14:42:42] ANSI_COLOR="0;31"
[2026-04-21 14:42:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 14:42:42] HOME_URL="https://www.centos.org/"
[2026-04-21 14:42:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 14:42:42] 
[2026-04-21 14:42:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 14:42:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 14:42:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 14:42:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 14:42:42] 
[2026-04-21 14:42:42] 2026-04-21 18:41:59,042 | INFO     | **************************************
[2026-04-21 14:42:42] 2026-04-21 18:41:59,545 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-21 14:42:42] 2026-04-21 18:41:59,593 | INFO     | sufficient remaining disk space (73740058624 B)
[2026-04-21 14:42:42] 2026-04-21 18:41:59,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 14:42:42] 2026-04-21 18:41:59,593 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 14:42:42] 2026-04-21 18:41:59,593 | INFO     | update_server=False
[2026-04-21 14:42:42] 2026-04-21 18:41:59,594 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 14:42:42] 2026-04-21 18:41:59,934 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-21 14:42:42] 2026-04-21 18:41:59,935 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-21 14:42:42] 2026-04-21 18:41:59,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:42:42] 2026-04-21 18:41:59,935 | INFO     | will abort loop
[2026-04-21 14:42:42] 2026-04-21 18:42:00,415 | INFO     | all data control threads have been joined
[2026-04-21 14:42:42] 2026-04-21 18:42:00,447 | INFO     | all payload control threads have been joined
[2026-04-21 14:42:42] 2026-04-21 18:42:00,612 | INFO     | [job] retrieve thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:00,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 14:42:42] 2026-04-21 18:42:00,902 | INFO     | all job control threads have been joined
[2026-04-21 14:42:42] 2026-04-21 18:42:00,940 | INFO     | [job] job monitor thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:00,954 | INFO     | [data] copytool_in thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:00,955 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:00,972 | INFO     | [payload] validate_post thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,421 | INFO     | [data] control thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,437 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,453 | INFO     | [payload] control thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,483 | INFO     | [job] validate thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 14:42:42] 2026-04-21 18:42:01,639 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,762 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:01,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:42:42] 2026-04-21 18:42:01,908 | INFO     | [job] control thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:02,041 | INFO     | [payload] failed_post thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:02,700 | INFO     | [data] copytool_out thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:02,781 | INFO     | [job] queue monitor thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:05,623 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 14:42:42] 2026-04-21 18:42:31,349 | INFO     | PID=3375467 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 14:42:42] 2026-04-21 18:42:31,349 | INFO     | .. there are 27 such processes running
[2026-04-21 14:42:42] 2026-04-21 18:42:31,350 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 14:42:42] 2026-04-21 18:42:31,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 14:42:42] 2026-04-21 18:42:31,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 14:42:42] 2026-04-21 18:42:34,787 | INFO     | [monitor] cgroup control has ended
[2026-04-21 14:42:42] 2026-04-21 18:42:36,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980308399936)>', '<ExcThread(monitor, started 139979695060736)>']
[2026-04-21 14:42:42] 2026-04-21 18:42:37,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 14:42:42] 2026-04-21 18:42:37,387 | INFO     | [monitor] control thread has ended
[2026-04-21 14:42:42] 2026-04-21 18:42:41,555 | INFO     | all workflow threads have been joined
[2026-04-21 14:42:42] 2026-04-21 18:42:41,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 14:42:42] 2026-04-21 18:42:41,556 | INFO     | traces error code: 0
[2026-04-21 14:42:42] 2026-04-21 18:42:41,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 14:42:42] 2026-04-21 18:42:42,069 [wrapper] ==== pilot stdout END ====
[2026-04-21 14:42:42] 2026-04-21 18:42:42,083 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 14:42:42] 2026-04-21 18:42:42,094 [wrapper] pilotpid: 3375467
[2026-04-21 14:42:42] 2026-04-21 18:42:42,103 [wrapper] Pilot exit status: 0
[2026-04-21 14:42:42] 2026-04-21 18:42:42,180 [wrapper] pandaids: 7105214734 7105214734
[2026-04-21 14:42:42] 2026-04-21 18:42:42,381 [wrapper] cleanup supervisor_pilot 1207751 3375468
[2026-04-21 14:42:42] 2026-04-21 18:42:42,412 [wrapper] Test setup, not cleaning
[2026-04-21 14:42:42] 2026-04-21 18:42:42,418 [wrapper] apfmon messages muted
[2026-04-21 14:42:42] 2026-04-21 18:42:42,421 [wrapper] ==== wrapper stdout END ====
[2026-04-21 14:42:42] 2026-04-21 18:42:42,429 [wrapper] ==== wrapper stderr END ====
[2026-04-21 14:42:42]  *** Error codes and diagnostics ***
[2026-04-21 14:42:42]     "exeErrorCode": 0,
[2026-04-21 14:42:42]     "pilotErrorCode": 0,
[2026-04-21 14:42:42]  *** Listing of results directory ***
[2026-04-21 14:42:42] total 4644040
[2026-04-21 14:42:42] drwx------. 5 boincer umatlas       4096 Apr  1 08:07 pilot3
[2026-04-21 14:42:42] -rwx------. 1 boincer umatlas      36322 Apr 21 03:44 runpilot2-wrapper.sh
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 04:49 pilot3.tar.gz
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:06 queuedata.json
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas        100 Apr 21 05:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 14:42:42] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 05:25 run_atlas
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas        105 Apr 21 05:25 job.xml
[2026-04-21 14:42:42] -rw-r--r--. 3 boincer umatlas 2237576964 Apr 21 05:25 EVNT.49820242._000029.pool.root.1
[2026-04-21 14:42:42] -rw-r--r--. 3 boincer umatlas 2237576964 Apr 21 05:25 ATLAS.root_0
[2026-04-21 14:42:42] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:25 start_atlas.sh
[2026-04-21 14:42:42] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 05:25 shared
[2026-04-21 14:42:42] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 05:25 input.tar.gz
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas          0 Apr 21 05:25 boinc_lockfile
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 06:30 pandaJob.out
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas         57 Apr 21 06:30 setup.sh.local
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas     995858 Apr 21 06:30 agis_schedconf.cvmfs.json
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas        443 Apr 21 06:30 workernode_map.json
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas       6795 Apr 21 14:37 init_data.xml
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas  270087536 Apr 21 14:40 HITS.49820244._013654.pool.root.1
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas        490 Apr 21 14:40 boinc_task_state.xml
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas       1058 Apr 21 14:41 memory_monitor_summary.json
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas    1509089 Apr 21 14:41 agis_ddmendpoints.agis.ALL.json
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas     628794 Apr 21 14:41 log.49820244._013654.job.log.tgz.1
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas       6442 Apr 21 14:41 heartbeat_new.json
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas       6333 Apr 21 14:41 heartbeat.json
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas         28 Apr 21 14:42 wrapper_checkpoint.txt
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 14:42 boinc_mmap_file
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas         96 Apr 21 14:42 pilot_heartbeat.json
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas       5005 Apr 21 14:42 pilotlog.txt
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas    2462114 Apr 21 14:42 log.49820244._013654.job.log.1
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas        357 Apr 21 14:42 output.list
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas        410 Apr 21 14:42 runtime_log
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas    3112960 Apr 21 14:42 result.tar.gz
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas       9059 Apr 21 14:42 runtime_log.err
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas        790 Apr 21 14:42 2abd2a2fe213.diag
[2026-04-21 14:42:42] -rw-r--r--. 1 boincer umatlas      23424 Apr 21 14:42 stderr.txt
[2026-04-21 14:42:42] HITS file was successfully produced:
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas 270087536 Apr 21 14:40 shared/HITS.pool.root.1
[2026-04-21 14:42:42]  *** Contents of shared directory: ***
[2026-04-21 14:42:42] total 2452604
[2026-04-21 14:42:42] -rw-r--r--. 3 boincer umatlas 2237576964 Apr 21 05:25 ATLAS.root_0
[2026-04-21 14:42:42] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:25 start_atlas.sh
[2026-04-21 14:42:42] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 05:25 input.tar.gz
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas  270087536 Apr 21 14:40 HITS.pool.root.1
[2026-04-21 14:42:42] -rw-------. 1 boincer umatlas    3112960 Apr 21 14:42 result.tar.gz
14:42:44 (3355929): run_atlas exited; CPU time 79625.332893
14:42:44 (3355929): called boinc_finish(0)

</stderr_txt>
]]>

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