Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:24:49 (2886617): wrapper (7.7.26015): starting
05:24:49 (2886617): wrapper: running run_atlas (--nthreads 11)
[2026-04-21 05:24:49] Arguments: --nthreads 11
[2026-04-21 05:24:49] Threads: 11
[2026-04-21 05:24:49] Checking for CVMFS
[2026-04-21 05:24:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 05:24:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 05:24:50] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 05:24:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 05:24:51] 2.13.3.0 2758065 108794 496264 158685 1 292 27199347 32935936 19533 16776704 0 501157970 99.661 511563289 29447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 05:24:51] CVMFS is ok
[2026-04-21 05:24:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 05:24:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 05:24:51] Further information can be found at the LHC@home message board.
[2026-04-21 05:24:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 05:24:51] Checking for apptainer binary...
[2026-04-21 05:24:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 05:24:51] Running /usr/bin/apptainer --version
[2026-04-21 05:24:51] apptainer version 1.4.5-2.el9
[2026-04-21 05:24:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 05:24:52] c6-12-29-1.aglt2.org
[2026-04-21 05:24:52] apptainer works
[2026-04-21 05:24:52] Set ATHENA_PROC_NUMBER=11
[2026-04-21 05:24:52] Set ATHENA_CORE_NUMBER=11
[2026-04-21 05:24:52] Starting ATLAS job with PandaID=7105214707
[2026-04-21 05:24:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:30:20 (3355928): wrapper (7.7.26015): starting
06:30:20 (3355928): wrapper: running run_atlas (--nthreads 8)
[2026-04-21 06:30:20] Arguments: --nthreads 8
[2026-04-21 06:30:20] Threads: 8
[2026-04-21 06:30:20] This job has been restarted, cleaning up previous attempt
[2026-04-21 06:30:20] Checking for CVMFS
[2026-04-21 06:30:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-21 06:30:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-21 06:30:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-21 06:30:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-21 06:30:21] 2.13.3.0 2758065 108860 510432 158687 0 658 28689631 32935937 20173 16776704 0 504849862 99.663 512019596 29440 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-21 06:30:21] CVMFS is ok
[2026-04-21 06:30:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 06:30:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 06:30:21] Further information can be found at the LHC@home message board.
[2026-04-21 06:30:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 06:30:21] Checking for apptainer binary...
[2026-04-21 06:30:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-21 06:30:21] Running /usr/bin/apptainer --version
[2026-04-21 06:30:21] apptainer version 1.4.5-2.el9
[2026-04-21 06:30:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 06:30:21] c6-12-29-1.aglt2.org
[2026-04-21 06:30:21] apptainer works
[2026-04-21 06:30:21] Set ATHENA_PROC_NUMBER=8
[2026-04-21 06:30:21] Set ATHENA_CORE_NUMBER=8
[2026-04-21 06:30:21] Starting ATLAS job with PandaID=7105214707
[2026-04-21 06:30:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 14:39:44]  *** The last 200 lines of the pilot log: ***
[2026-04-21 14:39:44] 2026-04-21 18:38:49,619 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-04-21 14:39:44] 2026-04-21 18:38:49,620 | INFO     | this job has now completed (state=finished)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,620 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,620 | INFO     | log transfer has been attempted: DONE
[2026-04-21 14:39:44] 2026-04-21 18:38:49,620 | INFO     | job 7105214707 has finished - writing final server update
[2026-04-21 14:39:44] 2026-04-21 18:38:49,644 | INFO     | total number of processed events: 400 (read)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,694 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7105214707/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,695 | INFO     | extracted standard info from prmon json
[2026-04-21 14:39:44] 2026-04-21 18:38:49,695 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 14:39:44] 2026-04-21 18:38:49,696 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 14:39:44] 2026-04-21 18:38:49,696 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 14:39:44] 2026-04-21 18:38:49,708 | INFO     | fitting pss+swap vs Time
[2026-04-21 14:39:44] 2026-04-21 18:38:49,709 | INFO     | sum of square deviations: 34291589387.966583
[2026-04-21 14:39:44] 2026-04-21 18:38:49,714 | INFO     | sum of deviations: 46930723374.858444
[2026-04-21 14:39:44] 2026-04-21 18:38:49,714 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,715 | INFO     | mean y: 2537663.2979166666
[2026-04-21 14:39:44] 2026-04-21 18:38:49,715 | INFO     | intersect: 2537663.2979166666
[2026-04-21 14:39:44] 2026-04-21 18:38:49,715 | INFO     | chi2: 3.0161739432210104
[2026-04-21 14:39:44] 2026-04-21 18:38:49,716 | INFO     | sum of square deviations: 33231090357.840076
[2026-04-21 14:39:44] 2026-04-21 18:38:49,721 | INFO     | sum of deviations: 107753683882.56021
[2026-04-21 14:39:44] 2026-04-21 18:38:49,721 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,721 | INFO     | mean y: 2546353.597894737
[2026-04-21 14:39:44] 2026-04-21 18:38:49,721 | INFO     | intersect: 2546353.597894737
[2026-04-21 14:39:44] 2026-04-21 18:38:49,722 | INFO     | chi2: 1.6292590607128188
[2026-04-21 14:39:44] 2026-04-21 18:38:49,722 | INFO     | current chi2=1.6292590607128188 (change=45.98258948643684 %)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,723 | INFO     | sum of square deviations: 32192684765.210484
[2026-04-21 14:39:44] 2026-04-21 18:38:49,726 | INFO     | sum of deviations: 106228433482.39996
[2026-04-21 14:39:44] 2026-04-21 18:38:49,726 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,726 | INFO     | mean y: 2546129.6
[2026-04-21 14:39:44] 2026-04-21 18:38:49,727 | INFO     | intersect: 2546129.6
[2026-04-21 14:39:44] 2026-04-21 18:38:49,727 | INFO     | chi2: 1.6294162318109249
[2026-04-21 14:39:44] 2026-04-21 18:38:49,727 | INFO     | current chi2=1.6294162318109249 (change=-0.009646783737223854 %)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,727 | INFO     | right removable region: 469
[2026-04-21 14:39:44] 2026-04-21 18:38:49,727 | INFO     | sum of square deviations: 33231043997.840073
[2026-04-21 14:39:44] 2026-04-21 18:38:49,731 | INFO     | sum of deviations: -38351783727.2
[2026-04-21 14:39:44] 2026-04-21 18:38:49,731 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,731 | INFO     | mean y: 2549878.8842105265
[2026-04-21 14:39:44] 2026-04-21 18:38:49,731 | INFO     | intersect: 2549878.8842105265
[2026-04-21 14:39:44] 2026-04-21 18:38:49,732 | INFO     | chi2: 1.448194899356624
[2026-04-21 14:39:44] 2026-04-21 18:38:49,732 | INFO     | current chi2=1.448194899356624 (change=51.985696892199854 %)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,732 | INFO     | sum of square deviations: 32192592045.210484
[2026-04-21 14:39:44] 2026-04-21 18:38:49,739 | INFO     | sum of deviations: -49029337392.006386
[2026-04-21 14:39:44] 2026-04-21 18:38:49,739 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,740 | INFO     | mean y: 2551438.2829787233
[2026-04-21 14:39:44] 2026-04-21 18:38:49,740 | INFO     | intersect: 2551438.2829787233
[2026-04-21 14:39:44] 2026-04-21 18:38:49,741 | INFO     | chi2: 1.413044421587105
[2026-04-21 14:39:44] 2026-04-21 18:38:49,741 | INFO     | current chi2=1.413044421587105 (change=2.427192485288758 %)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,741 | INFO     | left removable region: 10
[2026-04-21 14:39:44] 2026-04-21 18:38:49,742 | INFO     | sum of square deviations: 29984694512.745064
[2026-04-21 14:39:44] 2026-04-21 18:38:49,748 | INFO     | sum of deviations: 10932468059.24183
[2026-04-21 14:39:44] 2026-04-21 18:38:49,749 | INFO     | mean x (centered): 0.0
[2026-04-21 14:39:44] 2026-04-21 18:38:49,749 | INFO     | mean y: 2560373.0501089324
[2026-04-21 14:39:44] 2026-04-21 18:38:49,749 | INFO     | intersect: 2560373.0501089324
[2026-04-21 14:39:44] 2026-04-21 18:38:49,750 | INFO     | chi2: 0.010303677692703928
[2026-04-21 14:39:44] 2026-04-21 18:38:49,750 | INFO     | current memory leak: 0.36 B/s (using 459 data points, chi2=0.01)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | could have reported an average CPU frequency of 2508 MHz (20 samples)
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | ..............................
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | . Timing measurements:
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | . get job = 0 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | . initial setup = 1 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | . payload setup = 17 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,752 | INFO     | . stage-in = 0 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,753 | INFO     | . payload execution = 29253 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,753 | INFO     | . stage-out = 2 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,753 | INFO     | . log creation = 0 s
[2026-04-21 14:39:44] 2026-04-21 18:38:49,753 | INFO     | ..............................
[2026-04-21 14:39:44] 2026-04-21 18:38:50,344 | INFO     | 
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | job summary report
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | --------------------------------------------------
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | PanDA job id: 7105214707
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | task id: 49820244
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | errors: (none)
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | pilot state: finished 
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | transexitcode: 0
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | exeerrorcode: 0
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | exeerrordiag: 
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | exitcode: 0
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | exitmsg: OK
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | cpuconsumptiontime: 78648 s
[2026-04-21 14:39:44] 2026-04-21 18:38:50,345 | INFO     | nevents: 400
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | neventsw: 0
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | pid: 3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | pgrp: 3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | corecount: 8
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | event service: False
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | sizes: {0: 2281556, 1: 2283385, 29275: 2321225, 29279: 2323245, 29282: 2323301, 29284: 2323495}
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | --------------------------------------------------
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | 
[2026-04-21 14:39:44] 2026-04-21 18:38:50,346 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-21 14:39:44] 2026-04-21 18:38:50,395 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,395 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,395 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,395 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,397 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 14:39:44] 2026-04-21 18:38:50,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,397 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 14:39:44] 2026-04-21 18:38:50,397 | INFO     | job 7105214707 has completed (purged errors)
[2026-04-21 14:39:44] 2026-04-21 18:38:50,397 | INFO     | overall cleanup function is called
[2026-04-21 14:39:44] 2026-04-21 18:38:51,452 | INFO     | --- collectZombieJob: --- 10, [3395069]
[2026-04-21 14:39:44] 2026-04-21 18:38:51,453 | INFO     | zombie collector waiting for pid 3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:51,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 14:39:44] 2026-04-21 18:38:51,453 | INFO     | collected zombie processes
[2026-04-21 14:39:44] 2026-04-21 18:38:51,453 | INFO     | will attempt to kill all subprocesses of pid=3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:52,152 | INFO     | process IDs to be killed: [3395069] (in reverse order)
[2026-04-21 14:39:44] 2026-04-21 18:38:52,294 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 14:39:44] 2026-04-21 18:38:52,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 14:39:44] 2026-04-21 18:38:52,313 | INFO     | did not find any defunct processes belonging to 3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:52,332 | INFO     | did not find any defunct processes belonging to 3395069
[2026-04-21 14:39:44] 2026-04-21 18:38:52,332 | INFO     | Ready for new job
[2026-04-21 14:39:44] 2026-04-21 18:38:52,334 | INFO     | **************************************
[2026-04-21 14:39:44] 2026-04-21 18:38:52,334 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 14:39:44] 2026-04-21 18:38:52,334 | INFO     | **************************************
[2026-04-21 14:39:44] 2026-04-21 18:38:52,334 | INFO     | 
[2026-04-21 14:39:44] 2026-04-21 18:38:52,340 | INFO     | architecture information:
[2026-04-21 14:39:44] 2026-04-21 18:38:52,341 | INFO     | executing command: cat /etc/os-release
[2026-04-21 14:39:44] 2026-04-21 18:38:52,365 | INFO     | cat /etc/os-release:
[2026-04-21 14:39:44] NAME="CentOS Linux"
[2026-04-21 14:39:44] VERSION="7 (Core)"
[2026-04-21 14:39:44] ID="centos"
[2026-04-21 14:39:44] ID_LIKE="rhel fedora"
[2026-04-21 14:39:44] VERSION_ID="7"
[2026-04-21 14:39:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 14:39:44] ANSI_COLOR="0;31"
[2026-04-21 14:39:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 14:39:44] HOME_URL="https://www.centos.org/"
[2026-04-21 14:39:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 14:39:44] 
[2026-04-21 14:39:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 14:39:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 14:39:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 14:39:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 14:39:44] 
[2026-04-21 14:39:44] 2026-04-21 18:38:52,366 | INFO     | **************************************
[2026-04-21 14:39:44] 2026-04-21 18:38:52,872 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-21 14:39:44] 2026-04-21 18:38:52,915 | INFO     | sufficient remaining disk space (72595013632 B)
[2026-04-21 14:39:44] 2026-04-21 18:38:52,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 14:39:44] 2026-04-21 18:38:52,916 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 14:39:44] 2026-04-21 18:38:52,916 | INFO     | update_server=False
[2026-04-21 14:39:44] 2026-04-21 18:38:52,916 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 14:39:44] 2026-04-21 18:38:52,977 | INFO     | all job control threads have been joined
[2026-04-21 14:39:44] 2026-04-21 18:38:53,066 | INFO     | all payload control threads have been joined
[2026-04-21 14:39:44] 2026-04-21 18:38:53,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 14:39:44] 2026-04-21 18:38:53,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:39:44] 2026-04-21 18:38:53,340 | INFO     | aborting loop
[2026-04-21 14:39:44] 2026-04-21 18:38:53,812 | INFO     | all data control threads have been joined
[2026-04-21 14:39:44] 2026-04-21 18:38:53,921 | INFO     | [job] retrieve thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:53,983 | INFO     | [job] control thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,052 | INFO     | [job] validate thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,072 | INFO     | [payload] control thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 14:39:44] 2026-04-21 18:38:54,342 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,345 | INFO     | [job] job monitor thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,756 | INFO     | [payload] validate_post thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,818 | INFO     | [data] control thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,868 | INFO     | [payload] failed_post thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,910 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:54,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 14:39:44] 2026-04-21 18:38:55,102 | INFO     | [data] copytool_in thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:55,126 | INFO     | [data] copytool_out thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:55,128 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:55,153 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:55,938 | INFO     | [job] queue monitor thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:38:58,332 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 14:39:44] 2026-04-21 18:39:22,586 | INFO     | PID=3376348 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 14:39:44] 2026-04-21 18:39:22,587 | INFO     | .. there are 27 such processes running
[2026-04-21 14:39:44] 2026-04-21 18:39:22,587 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 14:39:44] 2026-04-21 18:39:22,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 14:39:44] 2026-04-21 18:39:22,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 14:39:44] 2026-04-21 18:39:36,549 | INFO     | [monitor] cgroup control has ended
[2026-04-21 14:39:44] 2026-04-21 18:39:38,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269153539904)>', '<ExcThread(monitor, started 140268531611392)>']
[2026-04-21 14:39:44] 2026-04-21 18:39:38,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 14:39:44] 2026-04-21 18:39:38,696 | INFO     | [monitor] control thread has ended
[2026-04-21 14:39:44] 2026-04-21 18:39:43,049 | INFO     | all workflow threads have been joined
[2026-04-21 14:39:44] 2026-04-21 18:39:43,050 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 14:39:44] 2026-04-21 18:39:43,050 | INFO     | traces error code: 0
[2026-04-21 14:39:44] 2026-04-21 18:39:43,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 14:39:44] 2026-04-21 18:39:43,697 [wrapper] ==== pilot stdout END ====
[2026-04-21 14:39:44] 2026-04-21 18:39:43,751 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 14:39:44] 2026-04-21 18:39:43,767 [wrapper] pilotpid: 3376348
[2026-04-21 14:39:44] 2026-04-21 18:39:43,784 [wrapper] Pilot exit status: 0
[2026-04-21 14:39:44] 2026-04-21 18:39:43,847 [wrapper] pandaids: 7105214707 7105214707
[2026-04-21 14:39:44] 2026-04-21 18:39:43,945 [wrapper] cleanup supervisor_pilot 1207816 3376349
[2026-04-21 14:39:44] 2026-04-21 18:39:43,955 [wrapper] Test setup, not cleaning
[2026-04-21 14:39:44] 2026-04-21 18:39:43,965 [wrapper] apfmon messages muted
[2026-04-21 14:39:44] 2026-04-21 18:39:43,976 [wrapper] ==== wrapper stdout END ====
[2026-04-21 14:39:44] 2026-04-21 18:39:43,980 [wrapper] ==== wrapper stderr END ====
[2026-04-21 14:39:44]  *** Error codes and diagnostics ***
[2026-04-21 14:39:44]     "exeErrorCode": 0,
[2026-04-21 14:39:44]     "pilotErrorCode": 0,
[2026-04-21 14:39:44]  *** Listing of results directory ***
[2026-04-21 14:39:44] total 4672752
[2026-04-21 14:39:44] drwx------. 5 boincer umatlas       4096 Apr  1 08:07 pilot3
[2026-04-21 14:39:44] -rwx------. 1 boincer umatlas      36322 Apr 21 03:44 runpilot2-wrapper.sh
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas     644190 Apr 21 04:49 pilot3.tar.gz
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas       5094 Apr 21 05:06 queuedata.json
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas        100 Apr 21 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 14:39:44] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 21 05:24 run_atlas
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas        105 Apr 21 05:24 job.xml
[2026-04-21 14:39:44] -rw-r--r--. 3 boincer umatlas 2251800021 Apr 21 05:24 EVNT.49820242._000028.pool.root.1
[2026-04-21 14:39:44] -rw-r--r--. 3 boincer umatlas 2251800021 Apr 21 05:24 ATLAS.root_0
[2026-04-21 14:39:44] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:24 start_atlas.sh
[2026-04-21 14:39:44] drwxrwx--x. 2 boincer umatlas       4096 Apr 21 05:24 shared
[2026-04-21 14:39:44] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 05:24 input.tar.gz
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas          0 Apr 21 05:24 boinc_lockfile
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas       2551 Apr 21 06:30 pandaJob.out
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas         57 Apr 21 06:30 setup.sh.local
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas     995858 Apr 21 06:30 agis_schedconf.cvmfs.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas        443 Apr 21 06:30 workernode_map.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas  271225030 Apr 21 14:36 HITS.49820244._013629.pool.root.1
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas        490 Apr 21 14:36 boinc_task_state.xml
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas       6795 Apr 21 14:37 init_data.xml
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas       1058 Apr 21 14:38 memory_monitor_summary.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas    1509089 Apr 21 14:38 agis_ddmendpoints.agis.ALL.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas     553048 Apr 21 14:38 log.49820244._013629.job.log.tgz.1
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas       6440 Apr 21 14:38 heartbeat_new.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas       6331 Apr 21 14:38 heartbeat.json
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas         96 Apr 21 14:39 pilot_heartbeat.json
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas       8192 Apr 21 14:39 boinc_mmap_file
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas         28 Apr 21 14:39 wrapper_checkpoint.txt
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas       4819 Apr 21 14:39 pilotlog.txt
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas    2449180 Apr 21 14:39 log.49820244._013629.job.log.1
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas        357 Apr 21 14:39 output.list
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas        410 Apr 21 14:39 runtime_log
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas    3020800 Apr 21 14:39 result.tar.gz
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas       9059 Apr 21 14:39 runtime_log.err
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas        790 Apr 21 14:39 2abd774f25ff.diag
[2026-04-21 14:39:44] -rw-r--r--. 1 boincer umatlas      23206 Apr 21 14:39 stderr.txt
[2026-04-21 14:39:44] HITS file was successfully produced:
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas 271225030 Apr 21 14:36 shared/HITS.pool.root.1
[2026-04-21 14:39:44]  *** Contents of shared directory: ***
[2026-04-21 14:39:44] total 2467516
[2026-04-21 14:39:44] -rw-r--r--. 3 boincer umatlas 2251800021 Apr 21 05:24 ATLAS.root_0
[2026-04-21 14:39:44] -rw-r--r--. 2 boincer umatlas      15665 Apr 21 05:24 start_atlas.sh
[2026-04-21 14:39:44] -rw-r--r--. 2 boincer umatlas     656926 Apr 21 05:24 input.tar.gz
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas  271225030 Apr 21 14:36 HITS.pool.root.1
[2026-04-21 14:39:44] -rw-------. 1 boincer umatlas    3020800 Apr 21 14:39 result.tar.gz
14:39:45 (3355928): run_atlas exited; CPU time 80109.247515
14:39:45 (3355928): called boinc_finish(0)

</stderr_txt>
]]>

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