Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
10:15:40 (1831294): wrapper (7.7.26015): starting
10:15:40 (1831294): wrapper: running run_atlas (--nthreads 4)
[2026-04-20 10:15:40] Arguments: --nthreads 4
[2026-04-20 10:15:40] Threads: 4
[2026-04-20 10:15:40] Checking for CVMFS
[2026-04-20 10:15:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-20 10:15:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-20 10:15:42] Running cvmfs_config stat atlas.cern.ch
[2026-04-20 10:15:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-20 10:15:42] 2.13.3.0 1735093 208 47460 158653 3 188 3047320 4096001 916 130560 0 166851 99.992 469 86 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-20 10:15:42] CVMFS is ok
[2026-04-20 10:15:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-20 10:15:42] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-20 10:15:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-20 10:15:42] Further information can be found at the LHC@home message board.
[2026-04-20 10:15:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-20 10:15:42] Checking for apptainer binary...
[2026-04-20 10:15:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-20 10:15:42] Running /usr/bin/apptainer --version
[2026-04-20 10:15:42] apptainer version 1.4.5
[2026-04-20 10:15:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-20 10:15:42] T5810-Ubuntu
[2026-04-20 10:15:42] apptainer works
[2026-04-20 10:15:42] Set ATHENA_PROC_NUMBER=4
[2026-04-20 10:15:42] Set ATHENA_CORE_NUMBER=4
[2026-04-20 10:15:42] Starting ATLAS job with PandaID=7088076473
[2026-04-20 10:15:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC_31420/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-20 12:58:39]  *** The last 200 lines of the pilot log: ***
[2026-04-20 12:58:39] 2026-04-20 16:57:21,694 | INFO     | total number of processed events: 400 (read)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,701 | INFO     | using path: /home/whitlerd/Desktop/BOINC_31420/slots/0/PanDA_Pilot-7088076473/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,701 | INFO     | extracted standard info from prmon json
[2026-04-20 12:58:39] 2026-04-20 16:57:21,701 | INFO     | extracted standard memory fields from prmon json
[2026-04-20 12:58:39] 2026-04-20 16:57:21,702 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-20 12:58:39] 2026-04-20 16:57:21,702 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-20 12:58:39] 2026-04-20 16:57:21,704 | INFO     | fitting pss+swap vs Time
[2026-04-20 12:58:39] 2026-04-20 16:57:21,705 | INFO     | sum of square deviations: 1246386160.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,706 | INFO     | sum of deviations: -20181810228.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,706 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,706 | INFO     | mean y: 2365537.289308176
[2026-04-20 12:58:39] 2026-04-20 16:57:21,706 | INFO     | intersect: 2365537.289308176
[2026-04-20 12:58:39] 2026-04-20 16:57:21,706 | INFO     | chi2: 2.2740897698293203
[2026-04-20 12:58:39] 2026-04-20 16:57:21,707 | INFO     | sum of square deviations: 1132458442.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | sum of deviations: -8857171604.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | mean y: 2380342.3051948054
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | intersect: 2380342.3051948054
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | chi2: 1.4109674282653226
[2026-04-20 12:58:39] 2026-04-20 16:57:21,708 | INFO     | current chi2=1.4109674282653226 (change=37.954629276960276 %)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,709 | INFO     | sum of square deviations: 1025693650.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | sum of deviations: -8114612352.000003
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | mean y: 2381403.33557047
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | intersect: 2381403.33557047
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | chi2: 1.4106520902880484
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | current chi2=1.4106520902880484 (change=0.02234906142815194 %)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,710 | INFO     | right removable region: 148
[2026-04-20 12:58:39] 2026-04-20 16:57:21,711 | INFO     | sum of square deviations: 1132458442.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,712 | INFO     | sum of deviations: -38740791492.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,712 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,712 | INFO     | mean y: 2389916.461038961
[2026-04-20 12:58:39] 2026-04-20 16:57:21,712 | INFO     | intersect: 2389916.461038961
[2026-04-20 12:58:39] 2026-04-20 16:57:21,712 | INFO     | chi2: 0.9829555634551348
[2026-04-20 12:58:39] 2026-04-20 16:57:21,713 | INFO     | current chi2=0.9829555634551348 (change=56.77586801998103 %)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,713 | INFO     | sum of square deviations: 1025693650.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | sum of deviations: -36341044142.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | mean y: 2386482.2080536913
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | intersect: 2386482.2080536913
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | chi2: 0.9832095419643574
[2026-04-20 12:58:39] 2026-04-20 16:57:21,714 | INFO     | current chi2=0.9832095419643574 (change=-0.025838249323280722 %)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,715 | INFO     | left removable region: 10
[2026-04-20 12:58:39] 2026-04-20 16:57:21,715 | INFO     | sum of square deviations: 814878534.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,716 | INFO     | sum of deviations: -23804393224.5
[2026-04-20 12:58:39] 2026-04-20 16:57:21,716 | INFO     | mean x (centered): 0.0
[2026-04-20 12:58:39] 2026-04-20 16:57:21,716 | INFO     | mean y: 2405404.427536232
[2026-04-20 12:58:39] 2026-04-20 16:57:21,716 | INFO     | intersect: 2405404.427536232
[2026-04-20 12:58:39] 2026-04-20 16:57:21,716 | INFO     | chi2: 0.08229393372641305
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | current memory leak: -29.21 B/s (using 138 data points, chi2=0.08)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | could have reported an average CPU frequency of 2906 MHz (9 samples)
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | ..............................
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | . Timing measurements:
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | . get job = 0 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | . initial setup = 5 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,717 | INFO     | . payload setup = 5 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,718 | INFO     | . stage-in = 0 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,718 | INFO     | . payload execution = 9663 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,718 | INFO     | . stage-out = 0 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,718 | INFO     | . log creation = 0 s
[2026-04-20 12:58:39] 2026-04-20 16:57:21,718 | INFO     | ..............................
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | 
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | job summary report
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | --------------------------------------------------
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | PanDA job id: 7088076473
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | task id: 49645815
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | errors: (none)
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | pilot state: finished 
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | transexitcode: 0
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | exeerrorcode: 0
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | exeerrordiag: 
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | exitcode: 0
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | exitmsg: OK
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | cpuconsumptiontime: 37489 s
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | nevents: 400
[2026-04-20 12:58:39] 2026-04-20 16:57:22,133 | INFO     | neventsw: 0
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | pid: 1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | pgrp: 1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | corecount: 4
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | event service: False
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | sizes: {0: 2281868, 1: 2283498, 11: 2283526, 9672: 2312145, 9673: 2321239, 9675: 2321441}
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | --------------------------------------------------
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | 
[2026-04-20 12:58:39] 2026-04-20 16:57:22,134 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC_31420/slots/0
[2026-04-20 12:58:39] 2026-04-20 16:57:22,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | job 7088076473 has completed (purged errors)
[2026-04-20 12:58:39] 2026-04-20 16:57:22,146 | INFO     | overall cleanup function is called
[2026-04-20 12:58:39] 2026-04-20 16:57:23,152 | INFO     | --- collectZombieJob: --- 10, [1840218]
[2026-04-20 12:58:39] 2026-04-20 16:57:23,152 | INFO     | zombie collector waiting for pid 1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:23,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-20 12:58:39] 2026-04-20 16:57:23,152 | INFO     | collected zombie processes
[2026-04-20 12:58:39] 2026-04-20 16:57:23,152 | INFO     | will attempt to kill all subprocesses of pid=1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:23,278 | INFO     | process IDs to be killed: [1840218] (in reverse order)
[2026-04-20 12:58:39] 2026-04-20 16:57:23,310 | WARNING  | found no corresponding commands to process id(s)
[2026-04-20 12:58:39] 2026-04-20 16:57:23,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-20 12:58:39] 2026-04-20 16:57:23,313 | INFO     | did not find any defunct processes belonging to 1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:23,315 | INFO     | did not find any defunct processes belonging to 1840218
[2026-04-20 12:58:39] 2026-04-20 16:57:23,315 | INFO     | Ready for new job
[2026-04-20 12:58:39] 2026-04-20 16:57:23,316 | INFO     | **************************************
[2026-04-20 12:58:39] 2026-04-20 16:57:23,316 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-20 12:58:39] 2026-04-20 16:57:23,316 | INFO     | **************************************
[2026-04-20 12:58:39] 2026-04-20 16:57:23,316 | INFO     | 
[2026-04-20 12:58:39] 2026-04-20 16:57:23,318 | INFO     | architecture information:
[2026-04-20 12:58:39] 2026-04-20 16:57:23,318 | INFO     | executing command: cat /etc/os-release
[2026-04-20 12:58:39] 2026-04-20 16:57:23,325 | INFO     | cat /etc/os-release:
[2026-04-20 12:58:39] NAME="CentOS Linux"
[2026-04-20 12:58:39] VERSION="7 (Core)"
[2026-04-20 12:58:39] ID="centos"
[2026-04-20 12:58:39] ID_LIKE="rhel fedora"
[2026-04-20 12:58:39] VERSION_ID="7"
[2026-04-20 12:58:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-20 12:58:39] ANSI_COLOR="0;31"
[2026-04-20 12:58:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-20 12:58:39] HOME_URL="https://www.centos.org/"
[2026-04-20 12:58:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-20 12:58:39] 
[2026-04-20 12:58:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-20 12:58:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-20 12:58:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-20 12:58:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-20 12:58:39] 
[2026-04-20 12:58:39] 2026-04-20 16:57:23,325 | INFO     | **************************************
[2026-04-20 12:58:39] 2026-04-20 16:57:23,827 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC_31420/slots/0
[2026-04-20 12:58:39] 2026-04-20 16:57:23,835 | INFO     | sufficient remaining disk space (368978165760 B)
[2026-04-20 12:58:39] 2026-04-20 16:57:23,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-20 12:58:39] 2026-04-20 16:57:23,835 | INFO     | current server update state: UPDATING_FINAL
[2026-04-20 12:58:39] 2026-04-20 16:57:23,835 | INFO     | update_server=False
[2026-04-20 12:58:39] 2026-04-20 16:57:23,835 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-20 12:58:39] 2026-04-20 16:57:23,954 | INFO     | all job control threads have been joined
[2026-04-20 12:58:39] 2026-04-20 16:57:23,967 | INFO     | all data control threads have been joined
[2026-04-20 12:58:39] 2026-04-20 16:57:24,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-20 12:58:39] 2026-04-20 16:57:24,840 | INFO     | [job] retrieve thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:24,911 | INFO     | [payload] validate_pre thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:24,913 | INFO     | [data] copytool_in thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:24,958 | INFO     | [job] control thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:24,972 | INFO     | [data] control thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:24,987 | INFO     | all payload control threads have been joined
[2026-04-20 12:58:39] 2026-04-20 16:57:25,168 | WARNING  | process 1840218 can no longer be monitored (due to stat problems) - aborting
[2026-04-20 12:58:39] 2026-04-20 16:57:25,234 | INFO     | [payload] execute_payloads thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:25,255 | INFO     | using path: /home/whitlerd/Desktop/BOINC_31420/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 12:58:39] 2026-04-20 16:57:25,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-20 12:58:39] 2026-04-20 16:57:25,379 | INFO     | number of running child processes to parent process 1840218: 1
[2026-04-20 12:58:39] 2026-04-20 16:57:25,380 | INFO     | maximum number of monitored processes: 6
[2026-04-20 12:58:39] 2026-04-20 16:57:25,380 | INFO     | aborting job monitoring since job object (job id=7088076473) has expired
[2026-04-20 12:58:39] 2026-04-20 16:57:25,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-20 12:58:39] 2026-04-20 16:57:25,380 | INFO     | will abort loop
[2026-04-20 12:58:39] 2026-04-20 16:57:25,679 | INFO     | [payload] validate_post thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:25,794 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:25,992 | INFO     | [payload] control thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,006 | INFO     | [payload] failed_post thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,101 | INFO     | [job] validate thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,157 | INFO     | [job] create_data_payload thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,385 | INFO     | [job] job monitor thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,749 | INFO     | [data] copytool_out thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:26,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-20 12:58:39] 2026-04-20 16:57:27,821 | INFO     | [job] queue monitor thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:29,294 | INFO     | [data] queue_monitor thread has finished
[2026-04-20 12:58:39] 2026-04-20 16:57:54,662 | INFO     | PID=1835530 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-20 12:58:39] 2026-04-20 16:57:54,662 | INFO     | .. there are 2 such processes running
[2026-04-20 12:58:39] 2026-04-20 16:57:54,663 | INFO     | found 0 job(s) in 20 queues
[2026-04-20 12:58:39] 2026-04-20 16:57:54,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-20 12:58:39] 2026-04-20 16:57:54,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-20 12:58:39] 2026-04-20 16:58:07,946 | INFO     | [monitor] cgroup control has ended
[2026-04-20 12:58:39] 2026-04-20 16:58:08,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133259176208192)>', '<ExcThread(monitor, started 133258339677952)>']
[2026-04-20 12:58:39] 2026-04-20 16:58:08,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-20 12:58:39] 2026-04-20 16:58:08,733 | INFO     | [monitor] control thread has ended
[2026-04-20 12:58:39] 2026-04-20 16:58:13,627 | INFO     | all workflow threads have been joined
[2026-04-20 12:58:39] 2026-04-20 16:58:13,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-20 12:58:39] 2026-04-20 16:58:13,627 | INFO     | traces error code: 0
[2026-04-20 12:58:39] 2026-04-20 16:58:13,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-20 12:58:39] 2026-04-20 16:58:13,687 [wrapper] ==== pilot stdout END ====
[2026-04-20 12:58:39] 2026-04-20 16:58:13,689 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-20 12:58:39] 2026-04-20 16:58:13,690 [wrapper] pilotpid: 1835530
[2026-04-20 12:58:39] 2026-04-20 16:58:13,691 [wrapper] Pilot exit status: 0
[2026-04-20 12:58:39] 2026-04-20 16:58:13,697 [wrapper] pandaids: 7088076473
[2026-04-20 12:58:39] 2026-04-20 16:58:13,717 [wrapper] cleanup supervisor_pilot 1878517 1835531
[2026-04-20 12:58:39] 2026-04-20 16:58:13,719 [wrapper] Test setup, not cleaning
[2026-04-20 12:58:39] 2026-04-20 16:58:13,720 [wrapper] apfmon messages muted
[2026-04-20 12:58:39] 2026-04-20 16:58:13,722 [wrapper] ==== wrapper stdout END ====
[2026-04-20 12:58:39] 2026-04-20 16:58:13,723 [wrapper] ==== wrapper stderr END ====
[2026-04-20 12:58:39]  *** Error codes and diagnostics ***
[2026-04-20 12:58:39]     "exeErrorCode": 0,
[2026-04-20 12:58:39]     "pilotErrorCode": 0,
[2026-04-20 12:58:39]  *** Listing of results directory ***
[2026-04-20 12:58:39] total 416836
[2026-04-20 12:58:39] -rw-r--r-- 1 whitlerd whitlerd    644190 Apr 12 07:21 pilot3.tar.gz
[2026-04-20 12:58:39] -rwx------ 1 whitlerd whitlerd     36322 Apr 12 07:30 runpilot2-wrapper.sh
[2026-04-20 12:58:39] -rw-r--r-- 1 whitlerd whitlerd      5094 Apr 12 07:31 queuedata.json
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd       100 Apr 20 10:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-20 12:58:39] -rwxr-xr-x 1 whitlerd whitlerd      7986 Apr 20 10:15 run_atlas
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd       105 Apr 20 10:15 job.xml
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd 223558004 Apr 20 10:15 EVNT.48629115._000309.pool.root.1
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd     15665 Apr 20 10:15 start_atlas.sh
[2026-04-20 12:58:39] drwxrwx--x 2 whitlerd whitlerd      4096 Apr 20 10:15 shared
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd    656944 Apr 20 10:15 input.tar.gz
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd      8932 Apr 20 10:15 init_data.xml
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr 20 10:15 boinc_setup_complete
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr 20 10:15 boinc_lockfile
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd      2624 Apr 20 10:15 pandaJob.out
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd    997272 Apr 20 10:15 agis_schedconf.cvmfs.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd   1512404 Apr 20 10:15 agis_ddmendpoints.agis.ALL.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd       425 Apr 20 10:15 workernode_map.json
[2026-04-20 12:58:39] drwx------ 5 whitlerd whitlerd      4096 Apr 20 10:15 pilot3
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd 196754761 Apr 20 12:56 HITS.49645815._007701.pool.root.1
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd       487 Apr 20 12:57 boinc_task_state.xml
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd      1031 Apr 20 12:57 memory_monitor_summary.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd    278502 Apr 20 12:57 log.49645815._007701.job.log.tgz.1
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd      6350 Apr 20 12:57 heartbeat_new.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd      6241 Apr 20 12:57 heartbeat.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd        95 Apr 20 12:57 pilot_heartbeat.json
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd      5380 Apr 20 12:58 pilotlog.txt
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd    954401 Apr 20 12:58 log.49645815._007701.job.log.1
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd       357 Apr 20 12:58 output.list
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd       410 Apr 20 12:58 runtime_log
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd   1249280 Apr 20 12:58 result.tar.gz
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd       647 Apr 20 12:58 82517007597c.diag
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd      8737 Apr 20 12:58 runtime_log.err
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd        27 Apr 20 12:58 wrapper_checkpoint.txt
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd      8192 Apr 20 12:58 boinc_mmap_file
[2026-04-20 12:58:39] -rw-rw-r-- 1 whitlerd whitlerd     21156 Apr 20 12:58 stderr.txt
[2026-04-20 12:58:39] HITS file was successfully produced:
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd 196754761 Apr 20 12:56 shared/HITS.pool.root.1
[2026-04-20 12:58:39]  *** Contents of shared directory: ***
[2026-04-20 12:58:39] total 412352
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd 223558004 Apr 20 10:15 ATLAS.root_0
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd     15665 Apr 20 10:15 start_atlas.sh
[2026-04-20 12:58:39] -rw-r--r-- 2 whitlerd whitlerd    656944 Apr 20 10:15 input.tar.gz
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd 196754761 Apr 20 12:56 HITS.pool.root.1
[2026-04-20 12:58:39] -rw------- 1 whitlerd whitlerd   1249280 Apr 20 12:58 result.tar.gz
12:58:41 (1831294): run_atlas exited; CPU time 37646.191696
12:58:41 (1831294): called boinc_finish(0)

</stderr_txt>
]]>

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