Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:54:52 (3231967): wrapper (7.7.26015): starting
16:54:52 (3231967): wrapper: running run_atlas (--nthreads 9)
[2026-04-19 16:54:52] Arguments: --nthreads 9
[2026-04-19 16:54:52] Threads: 9
[2026-04-19 16:54:52] Checking for CVMFS
[2026-04-19 16:54:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 16:54:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 16:54:52] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 16:54:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 16:54:53] 2.13.3.0 9943 165269 137544 158631 1 58 33564642 39288833 9834 16776704 0 204513682 99.565 312841654 34491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-19 16:54:53] CVMFS is ok
[2026-04-19 16:54:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 16:54:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 16:54:53] Further information can be found at the LHC@home message board.
[2026-04-19 16:54:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 16:54:53] Checking for apptainer binary...
[2026-04-19 16:54:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 16:54:53] Running /usr/bin/apptainer --version
[2026-04-19 16:54:53] apptainer version 1.4.5-2.el9
[2026-04-19 16:54:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 16:54:53] c-210-6.aglt2.org
[2026-04-19 16:54:53] apptainer works
[2026-04-19 16:54:53] Set ATHENA_PROC_NUMBER=9
[2026-04-19 16:54:53] Set ATHENA_CORE_NUMBER=9
[2026-04-19 16:54:53] Starting ATLAS job with PandaID=7087159186
[2026-04-19 16:54:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:32:14 (3779035): wrapper (7.7.26015): starting
21:32:14 (3779035): wrapper: running run_atlas (--nthreads 8)
[2026-04-19 21:32:14] Arguments: --nthreads 8
[2026-04-19 21:32:14] Threads: 8
[2026-04-19 21:32:14] This job has been restarted, cleaning up previous attempt
[2026-04-19 21:32:14] Checking for CVMFS
[2026-04-19 21:32:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 21:32:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 21:32:15] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 21:32:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 21:32:15] 2.13.3.0 9943 165547 138220 158638 0 352 34513208 39288833 14521 16776704 0 205001448 99.565 312853442 34491 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-19 21:32:15] CVMFS is ok
[2026-04-19 21:32:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 21:32:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 21:32:15] Further information can be found at the LHC@home message board.
[2026-04-19 21:32:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 21:32:15] Checking for apptainer binary...
[2026-04-19 21:32:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 21:32:15] Running /usr/bin/apptainer --version
[2026-04-19 21:32:15] apptainer version 1.4.5-2.el9
[2026-04-19 21:32:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 21:32:15] c-210-6.aglt2.org
[2026-04-19 21:32:15] apptainer works
[2026-04-19 21:32:15] Set ATHENA_PROC_NUMBER=8
[2026-04-19 21:32:15] Set ATHENA_CORE_NUMBER=8
[2026-04-19 21:32:15] Starting ATLAS job with PandaID=7087159186
[2026-04-19 21:32:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-20 03:39:15]  *** The last 200 lines of the pilot log: ***
[2026-04-20 03:39:15] 2026-04-20 07:38:18,915 | INFO     | total number of processed events: 400 (read)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,922 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7087159186/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,923 | INFO     | extracted standard info from prmon json
[2026-04-20 03:39:15] 2026-04-20 07:38:18,923 | INFO     | extracted standard memory fields from prmon json
[2026-04-20 03:39:15] 2026-04-20 07:38:18,923 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-20 03:39:15] 2026-04-20 07:38:18,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-20 03:39:15] 2026-04-20 07:38:18,932 | INFO     | fitting pss+swap vs Time
[2026-04-20 03:39:15] 2026-04-20 07:38:18,933 | INFO     | sum of square deviations: 14466699303.263845
[2026-04-20 03:39:15] 2026-04-20 07:38:18,937 | INFO     | sum of deviations: 38870867938.33332
[2026-04-20 03:39:15] 2026-04-20 07:38:18,937 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,937 | INFO     | mean y: 2517068.6666666665
[2026-04-20 03:39:15] 2026-04-20 07:38:18,937 | INFO     | intersect: 2517068.6666666665
[2026-04-20 03:39:15] 2026-04-20 07:38:18,938 | INFO     | chi2: 2.2212541723823938
[2026-04-20 03:39:15] 2026-04-20 07:38:18,939 | INFO     | sum of square deviations: 13872267417.746479
[2026-04-20 03:39:15] 2026-04-20 07:38:18,942 | INFO     | sum of deviations: 60224978796.30989
[2026-04-20 03:39:15] 2026-04-20 07:38:18,943 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,943 | INFO     | mean y: 2522481.6929577463
[2026-04-20 03:39:15] 2026-04-20 07:38:18,943 | INFO     | intersect: 2522481.6929577463
[2026-04-20 03:39:15] 2026-04-20 07:38:18,944 | INFO     | chi2: 1.5434906245959492
[2026-04-20 03:39:15] 2026-04-20 07:38:18,944 | INFO     | current chi2=1.5434906245959492 (change=30.512651645782302 %)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,945 | INFO     | sum of square deviations: 13294260598.297138
[2026-04-20 03:39:15] 2026-04-20 07:38:18,948 | INFO     | sum of deviations: 59341681801.86286
[2026-04-20 03:39:15] 2026-04-20 07:38:18,949 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,949 | INFO     | mean y: 2522248.6228571427
[2026-04-20 03:39:15] 2026-04-20 07:38:18,949 | INFO     | intersect: 2522248.6228571427
[2026-04-20 03:39:15] 2026-04-20 07:38:18,950 | INFO     | chi2: 1.5437737801356333
[2026-04-20 03:39:15] 2026-04-20 07:38:18,950 | INFO     | current chi2=1.5437737801356333 (change=-0.018345141536455934 %)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,950 | INFO     | right removable region: 349
[2026-04-20 03:39:15] 2026-04-20 07:38:18,950 | INFO     | sum of square deviations: 13872218983.391582
[2026-04-20 03:39:15] 2026-04-20 07:38:18,954 | INFO     | sum of deviations: -18247257603.53802
[2026-04-20 03:39:15] 2026-04-20 07:38:18,954 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,955 | INFO     | mean y: 2531633.6450704224
[2026-04-20 03:39:15] 2026-04-20 07:38:18,955 | INFO     | intersect: 2531633.6450704224
[2026-04-20 03:39:15] 2026-04-20 07:38:18,956 | INFO     | chi2: 0.7827909507340253
[2026-04-20 03:39:15] 2026-04-20 07:38:18,956 | INFO     | current chi2=0.7827909507340253 (change=64.75905547115092 %)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,957 | INFO     | sum of square deviations: 13294229190.368637
[2026-04-20 03:39:15] 2026-04-20 07:38:18,960 | INFO     | sum of deviations: -21289391902.068565
[2026-04-20 03:39:15] 2026-04-20 07:38:18,960 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,961 | INFO     | mean y: 2532423.4742857143
[2026-04-20 03:39:15] 2026-04-20 07:38:18,961 | INFO     | intersect: 2532423.4742857143
[2026-04-20 03:39:15] 2026-04-20 07:38:18,961 | INFO     | chi2: 0.7667112279270587
[2026-04-20 03:39:15] 2026-04-20 07:38:18,962 | INFO     | current chi2=0.7667112279270587 (change=2.0541528733678596 %)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,962 | INFO     | left removable region: 10
[2026-04-20 03:39:15] 2026-04-20 07:38:18,962 | INFO     | sum of square deviations: 12079695910.306698
[2026-04-20 03:39:15] 2026-04-20 07:38:18,966 | INFO     | sum of deviations: 261971237.3893751
[2026-04-20 03:39:15] 2026-04-20 07:38:18,966 | INFO     | mean x (centered): 0.0
[2026-04-20 03:39:15] 2026-04-20 07:38:18,966 | INFO     | mean y: 2538205.796460177
[2026-04-20 03:39:15] 2026-04-20 07:38:18,966 | INFO     | intersect: 2538205.796460177
[2026-04-20 03:39:15] 2026-04-20 07:38:18,967 | INFO     | chi2: 0.07885908228185226
[2026-04-20 03:39:15] 2026-04-20 07:38:18,967 | INFO     | current memory leak: 0.02 B/s (using 339 data points, chi2=0.08)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,968 | INFO     | could have reported an average CPU frequency of 2600 MHz (16 samples)
[2026-04-20 03:39:15] 2026-04-20 07:38:18,968 | INFO     | ..............................
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . Timing measurements:
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . get job = 0 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . initial setup = 2 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . payload setup = 12 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . stage-in = 0 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . payload execution = 21915 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . stage-out = 2 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,969 | INFO     | . log creation = 0 s
[2026-04-20 03:39:15] 2026-04-20 07:38:18,970 | INFO     | ..............................
[2026-04-20 03:39:15] 2026-04-20 07:38:19,076 | INFO     | 
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | job summary report
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | --------------------------------------------------
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | PanDA job id: 7087159186
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | task id: 49263208
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | errors: (none)
[2026-04-20 03:39:15] 2026-04-20 07:38:19,077 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | pilot state: finished 
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | transexitcode: 0
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | exeerrorcode: 0
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | exeerrordiag: 
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | exitcode: 0
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | exitmsg: OK
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | cpuconsumptiontime: 50222 s
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | nevents: 400
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | neventsw: 0
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | pid: 3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:19,078 | INFO     | pgrp: 3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | corecount: 8
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | event service: False
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | sizes: {0: 2281694, 1: 2283466, 11: 2283466, 21932: 2317894, 21933: 2317893, 21935: 2326947, 21937: 2327325}
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | --------------------------------------------------
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | 
[2026-04-20 03:39:15] 2026-04-20 07:38:19,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-20 03:39:15] 2026-04-20 07:38:19,099 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-20 03:39:15] 2026-04-20 07:38:19,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,102 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-20 03:39:15] 2026-04-20 07:38:19,102 | INFO     | job 7087159186 has completed (purged errors)
[2026-04-20 03:39:15] 2026-04-20 07:38:19,102 | INFO     | overall cleanup function is called
[2026-04-20 03:39:15] 2026-04-20 07:38:19,441 | WARNING  | process 3792584 can no longer be monitored (due to stat problems) - aborting
[2026-04-20 03:39:15] 2026-04-20 07:38:19,658 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 03:39:15] 2026-04-20 07:38:19,926 | INFO     | number of running child processes to parent process 3792584: 1
[2026-04-20 03:39:15] 2026-04-20 07:38:19,927 | INFO     | maximum number of monitored processes: 6
[2026-04-20 03:39:15] 2026-04-20 07:38:19,927 | INFO     | aborting job monitoring since job object (job id=7087159186) has expired
[2026-04-20 03:39:15] 2026-04-20 07:38:20,110 | INFO     | --- collectZombieJob: --- 10, [3792584]
[2026-04-20 03:39:15] 2026-04-20 07:38:20,110 | INFO     | zombie collector waiting for pid 3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:20,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-20 03:39:15] 2026-04-20 07:38:20,111 | INFO     | collected zombie processes
[2026-04-20 03:39:15] 2026-04-20 07:38:20,111 | INFO     | will attempt to kill all subprocesses of pid=3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:20,362 | INFO     | process IDs to be killed: [3792584] (in reverse order)
[2026-04-20 03:39:15] 2026-04-20 07:38:20,454 | WARNING  | found no corresponding commands to process id(s)
[2026-04-20 03:39:15] 2026-04-20 07:38:20,454 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-20 03:39:15] 2026-04-20 07:38:20,464 | INFO     | did not find any defunct processes belonging to 3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:20,474 | INFO     | did not find any defunct processes belonging to 3792584
[2026-04-20 03:39:15] 2026-04-20 07:38:20,474 | INFO     | Ready for new job
[2026-04-20 03:39:15] 2026-04-20 07:38:20,476 | INFO     | **************************************
[2026-04-20 03:39:15] 2026-04-20 07:38:20,477 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-20 03:39:15] 2026-04-20 07:38:20,477 | INFO     | **************************************
[2026-04-20 03:39:15] 2026-04-20 07:38:20,477 | INFO     | 
[2026-04-20 03:39:15] 2026-04-20 07:38:20,479 | INFO     | architecture information:
[2026-04-20 03:39:15] 2026-04-20 07:38:20,479 | INFO     | executing command: cat /etc/os-release
[2026-04-20 03:39:15] 2026-04-20 07:38:20,496 | INFO     | cat /etc/os-release:
[2026-04-20 03:39:15] NAME="CentOS Linux"
[2026-04-20 03:39:15] VERSION="7 (Core)"
[2026-04-20 03:39:15] ID="centos"
[2026-04-20 03:39:15] ID_LIKE="rhel fedora"
[2026-04-20 03:39:15] VERSION_ID="7"
[2026-04-20 03:39:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-20 03:39:15] ANSI_COLOR="0;31"
[2026-04-20 03:39:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-20 03:39:15] HOME_URL="https://www.centos.org/"
[2026-04-20 03:39:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-20 03:39:15] 
[2026-04-20 03:39:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-20 03:39:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-20 03:39:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-20 03:39:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-20 03:39:15] 
[2026-04-20 03:39:15] 2026-04-20 07:38:20,497 | INFO     | **************************************
[2026-04-20 03:39:15] 2026-04-20 07:38:21,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-20 03:39:15] 2026-04-20 07:38:21,018 | INFO     | sufficient remaining disk space (53786705920 B)
[2026-04-20 03:39:15] 2026-04-20 07:38:21,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-20 03:39:15] 2026-04-20 07:38:21,018 | INFO     | current server update state: UPDATING_FINAL
[2026-04-20 03:39:15] 2026-04-20 07:38:21,018 | INFO     | update_server=False
[2026-04-20 03:39:15] 2026-04-20 07:38:21,018 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-20 03:39:15] 2026-04-20 07:38:21,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-20 03:39:15] 2026-04-20 07:38:21,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-20 03:39:15] 2026-04-20 07:38:21,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-20 03:39:15] 2026-04-20 07:38:21,020 | INFO     | aborting loop
[2026-04-20 03:39:15] 2026-04-20 07:38:21,999 | INFO     | all job control threads have been joined
[2026-04-20 03:39:15] 2026-04-20 07:38:22,023 | INFO     | [job] retrieve thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,024 | INFO     | [job] queue monitor thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,025 | INFO     | [job] job monitor thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,046 | INFO     | [data] copytool_in thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,074 | INFO     | [job] create_data_payload thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,075 | INFO     | [payload] validate_pre thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,115 | INFO     | all data control threads have been joined
[2026-04-20 03:39:15] 2026-04-20 07:38:22,177 | INFO     | all payload control threads have been joined
[2026-04-20 03:39:15] 2026-04-20 07:38:22,245 | INFO     | [job] validate thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:22,425 | INFO     | [payload] execute_payloads thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,004 | INFO     | [job] control thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,026 | INFO     | [data] copytool_out thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,120 | INFO     | [data] control thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,183 | INFO     | [payload] control thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,208 | INFO     | [payload] failed_post thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,477 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:23,581 | INFO     | [payload] validate_post thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:24,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-20 03:39:15] 2026-04-20 07:38:28,444 | INFO     | [data] queue_monitor thread has finished
[2026-04-20 03:39:15] 2026-04-20 07:38:52,086 | INFO     | PID=3786823 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-20 03:39:15] 2026-04-20 07:38:52,087 | INFO     | .. there are 7 such processes running
[2026-04-20 03:39:15] 2026-04-20 07:38:52,088 | INFO     | found 0 job(s) in 20 queues
[2026-04-20 03:39:15] 2026-04-20 07:38:52,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-20 03:39:15] 2026-04-20 07:38:52,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-20 03:39:15] 2026-04-20 07:39:08,366 | INFO     | [monitor] cgroup control has ended
[2026-04-20 03:39:15] 2026-04-20 07:39:09,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513374689088)>', '<ExcThread(monitor, started 140513009202944)>']
[2026-04-20 03:39:15] 2026-04-20 07:39:10,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-20 03:39:15] 2026-04-20 07:39:10,187 | INFO     | [monitor] control thread has ended
[2026-04-20 03:39:15] 2026-04-20 07:39:14,752 | INFO     | all workflow threads have been joined
[2026-04-20 03:39:15] 2026-04-20 07:39:14,752 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-20 03:39:15] 2026-04-20 07:39:14,753 | INFO     | traces error code: 0
[2026-04-20 03:39:15] 2026-04-20 07:39:14,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-20 03:39:15] 2026-04-20 07:39:14,914 [wrapper] ==== pilot stdout END ====
[2026-04-20 03:39:15] 2026-04-20 07:39:14,917 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-20 03:39:15] 2026-04-20 07:39:14,920 [wrapper] pilotpid: 3786823
[2026-04-20 03:39:15] 2026-04-20 07:39:14,923 [wrapper] Pilot exit status: 0
[2026-04-20 03:39:15] 2026-04-20 07:39:14,935 [wrapper] pandaids: 7087159186 7087159186
[2026-04-20 03:39:15] 2026-04-20 07:39:14,991 [wrapper] cleanup supervisor_pilot  141573 3786825
[2026-04-20 03:39:15] 2026-04-20 07:39:14,994 [wrapper] Test setup, not cleaning
[2026-04-20 03:39:15] 2026-04-20 07:39:14,997 [wrapper] apfmon messages muted
[2026-04-20 03:39:15] 2026-04-20 07:39:14,999 [wrapper] ==== wrapper stdout END ====
[2026-04-20 03:39:15] 2026-04-20 07:39:15,002 [wrapper] ==== wrapper stderr END ====
[2026-04-20 03:39:15]  *** Error codes and diagnostics ***
[2026-04-20 03:39:15]     "exeErrorCode": 0,
[2026-04-20 03:39:15]     "pilotErrorCode": 0,
[2026-04-20 03:39:15]  *** Listing of results directory ***
[2026-04-20 03:39:15] total 634716
[2026-04-20 03:39:15] drwx------. 5 boincer umatlas      4096 Apr  1 08:07 pilot3
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas    644190 Apr 11 14:42 pilot3.tar.gz
[2026-04-20 03:39:15] -rwx------. 1 boincer umatlas     36322 Apr 11 14:43 runpilot2-wrapper.sh
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas      5094 Apr 11 14:44 queuedata.json
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas       100 Apr 19 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-20 03:39:15] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 19 16:54 run_atlas
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas       105 Apr 19 16:54 job.xml
[2026-04-20 03:39:15] -rw-r--r--. 3 boincer umatlas 222781895 Apr 19 16:54 EVNT.49263206._000955.pool.root.1
[2026-04-20 03:39:15] -rw-r--r--. 3 boincer umatlas 222781895 Apr 19 16:54 ATLAS.root_0
[2026-04-20 03:39:15] -rw-r--r--. 2 boincer umatlas     15665 Apr 19 16:54 start_atlas.sh
[2026-04-20 03:39:15] drwxrwx--x. 2 boincer umatlas      4096 Apr 19 16:54 shared
[2026-04-20 03:39:15] -rw-r--r--. 2 boincer umatlas    656929 Apr 19 16:54 input.tar.gz
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas         0 Apr 19 16:54 boinc_lockfile
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas      2575 Apr 19 21:32 pandaJob.out
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas        57 Apr 19 21:32 setup.sh.local
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas    997737 Apr 19 21:32 agis_schedconf.cvmfs.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas       441 Apr 19 21:32 workernode_map.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas 195720180 Apr 20 03:37 HITS.49263208._037336.pool.root.1
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas       488 Apr 20 03:37 boinc_task_state.xml
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas      6575 Apr 20 03:38 init_data.xml
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas      1054 Apr 20 03:38 memory_monitor_summary.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas   1512404 Apr 20 03:38 agis_ddmendpoints.agis.ALL.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas    464433 Apr 20 03:38 log.49263208._037336.job.log.tgz.1
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas      6433 Apr 20 03:38 heartbeat_new.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas      6324 Apr 20 03:38 heartbeat.json
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas        96 Apr 20 03:38 pilot_heartbeat.json
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas      8192 Apr 20 03:39 boinc_mmap_file
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas        28 Apr 20 03:39 wrapper_checkpoint.txt
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas      4818 Apr 20 03:39 pilotlog.txt
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas   1830770 Apr 20 03:39 log.49263208._037336.job.log.1
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas       357 Apr 20 03:39 output.list
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas       410 Apr 20 03:39 runtime_log
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas   2314240 Apr 20 03:39 result.tar.gz
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas      9044 Apr 20 03:39 runtime_log.err
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas       785 Apr 20 03:39 96444055751b.diag
[2026-04-20 03:39:15] -rw-r--r--. 1 boincer umatlas     23261 Apr 20 03:39 stderr.txt
[2026-04-20 03:39:15] HITS file was successfully produced:
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas 195720180 Apr 20 03:37 shared/HITS.pool.root.1
[2026-04-20 03:39:15]  *** Contents of shared directory: ***
[2026-04-20 03:39:15] total 411628
[2026-04-20 03:39:15] -rw-r--r--. 3 boincer umatlas 222781895 Apr 19 16:54 ATLAS.root_0
[2026-04-20 03:39:15] -rw-r--r--. 2 boincer umatlas     15665 Apr 19 16:54 start_atlas.sh
[2026-04-20 03:39:15] -rw-r--r--. 2 boincer umatlas    656929 Apr 19 16:54 input.tar.gz
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas 195720180 Apr 20 03:37 HITS.pool.root.1
[2026-04-20 03:39:15] -rw-------. 1 boincer umatlas   2314240 Apr 20 03:39 result.tar.gz
03:39:16 (3779035): run_atlas exited; CPU time 50798.073901
03:39:16 (3779035): called boinc_finish(0)

</stderr_txt>
]]>

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