Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:39:43 (22540): wrapper (7.7.26015): starting
12:39:43 (22540): wrapper: running run_atlas (--nthreads 8)
[2026-04-19 12:39:43] Arguments: --nthreads 8
[2026-04-19 12:39:43] Threads: 8
[2026-04-19 12:39:43] Checking for CVMFS
[2026-04-19 12:39:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 12:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 12:39:43] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 12:39:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 12:39:43] 2.11.2.0 16039 5375 94860 158617 2 71 17809031 25165824 94 130560 0 1216135 99.785 3801390 26051 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-19 12:39:43] CVMFS is ok
[2026-04-19 12:39:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 12:39:43] Checking for apptainer binary...
[2026-04-19 12:39:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 12:39:43] Running /usr/bin/apptainer --version
[2026-04-19 12:39:43] apptainer version 1.3.2-1.el7
[2026-04-19 12:39:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 12:39:45] cg-vwn424.simple-grid.lan
[2026-04-19 12:39:45] apptainer works
[2026-04-19 12:39:45] Set ATHENA_PROC_NUMBER=8
[2026-04-19 12:39:45] Set ATHENA_CORE_NUMBER=8
[2026-04-19 12:39:45] Starting ATLAS job with PandaID=7086952266
[2026-04-19 12:39:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 15:48:40]  *** The last 200 lines of the pilot log: ***
[2026-04-19 15:48:40] 2026-04-19 13:47:41,250 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,250 | INFO     | log transfer has been attempted: DONE
[2026-04-19 15:48:40] 2026-04-19 13:47:41,251 | INFO     | job 7086952266 has finished - writing final server update
[2026-04-19 15:48:40] 2026-04-19 13:47:41,251 | INFO     | total number of processed events: 400 (read)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,253 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7086952266/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,254 | INFO     | extracted standard info from prmon json
[2026-04-19 15:48:40] 2026-04-19 13:47:41,254 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 15:48:40] 2026-04-19 13:47:41,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 15:48:40] 2026-04-19 13:47:41,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 15:48:40] 2026-04-19 13:47:41,259 | INFO     | fitting pss+swap vs Time
[2026-04-19 15:48:40] 2026-04-19 13:47:41,259 | INFO     | sum of square deviations: 1931608310.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,260 | INFO     | sum of deviations: 1574390510.500002
[2026-04-19 15:48:40] 2026-04-19 13:47:41,261 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,261 | INFO     | mean y: 2490047.820652174
[2026-04-19 15:48:40] 2026-04-19 13:47:41,261 | INFO     | intersect: 2490047.820652174
[2026-04-19 15:48:40] 2026-04-19 13:47:41,261 | INFO     | chi2: 2.4707853055738367
[2026-04-19 15:48:40] 2026-04-19 13:47:41,262 | INFO     | sum of square deviations: 1778377530.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,263 | INFO     | sum of deviations: 13669637497.999996
[2026-04-19 15:48:40] 2026-04-19 13:47:41,263 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,263 | INFO     | mean y: 2501815.944134078
[2026-04-19 15:48:40] 2026-04-19 13:47:41,264 | INFO     | intersect: 2501815.944134078
[2026-04-19 15:48:40] 2026-04-19 13:47:41,264 | INFO     | chi2: 1.6935239421933739
[2026-04-19 15:48:40] 2026-04-19 13:47:41,264 | INFO     | current chi2=1.6935239421933739 (change=31.45806969254032 %)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,264 | INFO     | sum of square deviations: 1633472487.5
[2026-04-19 15:48:40] 2026-04-19 13:47:41,266 | INFO     | sum of deviations: 13248482975.49999
[2026-04-19 15:48:40] 2026-04-19 13:47:41,266 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,266 | INFO     | mean y: 2501372.603448276
[2026-04-19 15:48:40] 2026-04-19 13:47:41,266 | INFO     | intersect: 2501372.603448276
[2026-04-19 15:48:40] 2026-04-19 13:47:41,266 | INFO     | chi2: 1.6948882133548977
[2026-04-19 15:48:40] 2026-04-19 13:47:41,267 | INFO     | current chi2=1.6948882133548977 (change=-0.08055812661006029 %)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,267 | INFO     | right removable region: 173
[2026-04-19 15:48:40] 2026-04-19 13:47:41,267 | INFO     | sum of square deviations: 1778377530.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,268 | INFO     | sum of deviations: -27339636421.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,269 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,269 | INFO     | mean y: 2518475.6424581003
[2026-04-19 15:48:40] 2026-04-19 13:47:41,269 | INFO     | intersect: 2518475.6424581003
[2026-04-19 15:48:40] 2026-04-19 13:47:41,269 | INFO     | chi2: 0.9430726359442221
[2026-04-19 15:48:40] 2026-04-19 13:47:41,269 | INFO     | current chi2=0.9430726359442221 (change=61.83105695922882 %)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,270 | INFO     | sum of square deviations: 1633472487.5
[2026-04-19 15:48:40] 2026-04-19 13:47:41,271 | INFO     | sum of deviations: -26910853238.499996
[2026-04-19 15:48:40] 2026-04-19 13:47:41,271 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,271 | INFO     | mean y: 2517966.7413793104
[2026-04-19 15:48:40] 2026-04-19 13:47:41,272 | INFO     | intersect: 2517966.7413793104
[2026-04-19 15:48:40] 2026-04-19 13:47:41,272 | INFO     | chi2: 0.9263065766368462
[2026-04-19 15:48:40] 2026-04-19 13:47:41,272 | INFO     | current chi2=0.9263065766368462 (change=1.7778120866150837 %)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,272 | INFO     | left removable region: 10
[2026-04-19 15:48:40] 2026-04-19 13:47:41,272 | INFO     | sum of square deviations: 1342841922.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,274 | INFO     | sum of deviations: -14283843813.999998
[2026-04-19 15:48:40] 2026-04-19 13:47:41,274 | INFO     | mean x (centered): 0.0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,274 | INFO     | mean y: 2531773.0674846624
[2026-04-19 15:48:40] 2026-04-19 13:47:41,274 | INFO     | intersect: 2531773.0674846624
[2026-04-19 15:48:40] 2026-04-19 13:47:41,274 | INFO     | chi2: 0.11929050752310957
[2026-04-19 15:48:40] 2026-04-19 13:47:41,275 | INFO     | current memory leak: -10.64 B/s (using 163 data points, chi2=0.12)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,275 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,275 | INFO     | ..............................
[2026-04-19 15:48:40] 2026-04-19 13:47:41,275 | INFO     | . Timing measurements:
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . get job = 0 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . initial setup = 7 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . payload setup = 17 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . stage-in = 0 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . payload execution = 11211 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . stage-out = 3 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | . log creation = 1 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,276 | INFO     | ..............................
[2026-04-19 15:48:40] 2026-04-19 13:47:41,401 | INFO     | 
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | job summary report
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | --------------------------------------------------
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | PanDA job id: 7086952266
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | task id: 49263200
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | errors: (none)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | pilot state: finished 
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | transexitcode: 0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | exeerrorcode: 0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | exeerrordiag: 
[2026-04-19 15:48:40] 2026-04-19 13:47:41,402 | INFO     | exitcode: 0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | exitmsg: OK
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | cpuconsumptiontime: 53155 s
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | nevents: 400
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | neventsw: 0
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | pid: 31021
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | pgrp: 31021
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | corecount: 8
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | event service: False
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | sizes: {0: 2281587, 1: 2283416, 12: 2283416, 11232: 2312713, 11233: 2312712, 11237: 2321766, 11238: 2322144}
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | --------------------------------------------------
[2026-04-19 15:48:40] 2026-04-19 13:47:41,403 | INFO     | 
[2026-04-19 15:48:40] 2026-04-19 13:47:41,404 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-04-19 15:48:40] 2026-04-19 13:47:41,966 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,966 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,966 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,968 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 15:48:40] 2026-04-19 13:47:41,969 | INFO     | job 7086952266 has completed (purged errors)
[2026-04-19 15:48:40] 2026-04-19 13:47:41,969 | INFO     | overall cleanup function is called
[2026-04-19 15:48:40] 2026-04-19 13:47:42,983 | INFO     | --- collectZombieJob: --- 10, [31021]
[2026-04-19 15:48:40] 2026-04-19 13:47:42,983 | INFO     | zombie collector waiting for pid 31021
[2026-04-19 15:48:40] 2026-04-19 13:47:42,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 15:48:40] 2026-04-19 13:47:42,984 | INFO     | collected zombie processes
[2026-04-19 15:48:40] 2026-04-19 13:47:42,984 | INFO     | will attempt to kill all subprocesses of pid=31021
[2026-04-19 15:48:40] 2026-04-19 13:47:43,056 | INFO     | process IDs to be killed: [31021] (in reverse order)
[2026-04-19 15:48:40] 2026-04-19 13:47:43,894 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 15:48:40] 2026-04-19 13:47:43,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 15:48:40] 2026-04-19 13:47:43,896 | INFO     | did not find any defunct processes belonging to 31021
[2026-04-19 15:48:40] 2026-04-19 13:47:43,898 | INFO     | did not find any defunct processes belonging to 31021
[2026-04-19 15:48:40] 2026-04-19 13:47:43,898 | INFO     | Ready for new job
[2026-04-19 15:48:40] 2026-04-19 13:47:43,900 | INFO     | **************************************
[2026-04-19 15:48:40] 2026-04-19 13:47:43,900 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 15:48:40] 2026-04-19 13:47:43,900 | INFO     | **************************************
[2026-04-19 15:48:40] 2026-04-19 13:47:43,900 | INFO     | 
[2026-04-19 15:48:40] 2026-04-19 13:47:43,901 | INFO     | pilot is running in a VM
[2026-04-19 15:48:40] 2026-04-19 13:47:43,901 | INFO     | architecture information:
[2026-04-19 15:48:40] 2026-04-19 13:47:43,908 | INFO     | executing command: cat /etc/os-release
[2026-04-19 15:48:40] 2026-04-19 13:47:44,250 | INFO     | cat /etc/os-release:
[2026-04-19 15:48:40] NAME="CentOS Linux"
[2026-04-19 15:48:40] VERSION="7 (Core)"
[2026-04-19 15:48:40] ID="centos"
[2026-04-19 15:48:40] ID_LIKE="rhel fedora"
[2026-04-19 15:48:40] VERSION_ID="7"
[2026-04-19 15:48:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 15:48:40] ANSI_COLOR="0;31"
[2026-04-19 15:48:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 15:48:40] HOME_URL="https://www.centos.org/"
[2026-04-19 15:48:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 15:48:40] 
[2026-04-19 15:48:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 15:48:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 15:48:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 15:48:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 15:48:40] 
[2026-04-19 15:48:40] 2026-04-19 13:47:44,250 | INFO     | **************************************
[2026-04-19 15:48:40] 2026-04-19 13:47:44,753 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-19 15:48:40] 2026-04-19 13:47:45,013 | INFO     | sufficient remaining disk space (496836280320 B)
[2026-04-19 15:48:40] 2026-04-19 13:47:45,013 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 15:48:40] 2026-04-19 13:47:45,013 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 15:48:40] 2026-04-19 13:47:45,014 | INFO     | update_server=False
[2026-04-19 15:48:40] 2026-04-19 13:47:45,014 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 15:48:40] 2026-04-19 13:47:45,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 15:48:40] 2026-04-19 13:47:45,014 | INFO     | aborting loop
[2026-04-19 15:48:40] 2026-04-19 13:47:45,060 | INFO     | all data control threads have been joined
[2026-04-19 15:48:40] 2026-04-19 13:47:45,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 15:48:40] 2026-04-19 13:47:45,982 | INFO     | all job control threads have been joined
[2026-04-19 15:48:40] 2026-04-19 13:47:46,019 | INFO     | [job] retrieve thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,020 | INFO     | [job] job monitor thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,066 | INFO     | [data] control thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,395 | INFO     | all payload control threads have been joined
[2026-04-19 15:48:40] 2026-04-19 13:47:46,409 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 15:48:40] 2026-04-19 13:47:46,557 | INFO     | [payload] validate_post thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,614 | INFO     | [data] copytool_in thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,909 | INFO     | [job] validate thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,919 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,978 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:46,988 | INFO     | [job] control thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:47,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 15:48:40] 2026-04-19 13:47:47,263 | INFO     | [payload] failed_post thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:47,352 | INFO     | [data] copytool_out thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:47,401 | INFO     | [payload] control thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:47,415 | INFO     | [job] queue monitor thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:47,488 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:51,264 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:47:55,964 | INFO     | job.realtimelogging is not enabled
[2026-04-19 15:48:40] 2026-04-19 13:47:56,970 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 15:48:40] 2026-04-19 13:48:13,366 | INFO     | PID=26576 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-19 15:48:40] 2026-04-19 13:48:13,367 | INFO     | .. there are 2 such processes running
[2026-04-19 15:48:40] 2026-04-19 13:48:13,367 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 15:48:40] 2026-04-19 13:48:13,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 15:48:40] 2026-04-19 13:48:13,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 15:48:40] 2026-04-19 13:48:30,224 | INFO     | [monitor] cgroup control has ended
[2026-04-19 15:48:40] 2026-04-19 13:48:30,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139807220840256)>', '<ExcThread(monitor, started 139806906488576)>']
[2026-04-19 15:48:40] 2026-04-19 13:48:30,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 15:48:40] 2026-04-19 13:48:30,469 | INFO     | [monitor] control thread has ended
[2026-04-19 15:48:40] 2026-04-19 13:48:35,373 | INFO     | all workflow threads have been joined
[2026-04-19 15:48:40] 2026-04-19 13:48:35,374 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 15:48:40] 2026-04-19 13:48:35,374 | INFO     | traces error code: 0
[2026-04-19 15:48:40] 2026-04-19 13:48:35,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 15:48:40] 2026-04-19 13:48:35,734 [wrapper] ==== pilot stdout END ====
[2026-04-19 15:48:40] 2026-04-19 13:48:35,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 15:48:40] 2026-04-19 13:48:35,953 [wrapper] pilotpid: 26576
[2026-04-19 15:48:40] 2026-04-19 13:48:36,059 [wrapper] Pilot exit status: 0
[2026-04-19 15:48:40] 2026-04-19 13:48:36,598 [wrapper] pandaids: 7086952266
[2026-04-19 15:48:40] 2026-04-19 13:48:37,576 [wrapper] cleanup supervisor_pilot 26920 26577
[2026-04-19 15:48:40] 2026-04-19 13:48:37,654 [wrapper] Test setup, not cleaning
[2026-04-19 15:48:40] 2026-04-19 13:48:37,737 [wrapper] apfmon messages muted
[2026-04-19 15:48:40] 2026-04-19 13:48:37,822 [wrapper] ==== wrapper stdout END ====
[2026-04-19 15:48:40] 2026-04-19 13:48:37,903 [wrapper] ==== wrapper stderr END ====
[2026-04-19 15:48:40]  *** Error codes and diagnostics ***
[2026-04-19 15:48:40]     "exeErrorCode": 0,
[2026-04-19 15:48:40]     "pilotErrorCode": 0,
[2026-04-19 15:48:40]  *** Listing of results directory ***
[2026-04-19 15:48:40] total 417784
[2026-04-19 15:48:40] -rwx------. 1 boinc boinc     36322 Apr 19 11:21 runpilot2-wrapper.sh
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc    644190 Apr 19 12:19 pilot3.tar.gz
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc      5094 Apr 19 12:20 queuedata.json
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc       100 Apr 19 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 15:48:40] -rwxr-xr-x. 1 boinc boinc      7986 Apr 19 12:39 run_atlas
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc       105 Apr 19 12:39 job.xml
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc      6305 Apr 19 12:39 init_data.xml
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc 227145000 Apr 19 12:39 EVNT.49263198._000945.pool.root.1
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc     15665 Apr 19 12:39 start_atlas.sh
[2026-04-19 15:48:40] drwxrwx--x. 2 boinc boinc        68 Apr 19 12:39 shared
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc    656941 Apr 19 12:39 input.tar.gz
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc         0 Apr 19 12:39 boinc_lockfile
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc      2575 Apr 19 12:39 pandaJob.out
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc    997326 Apr 19 12:40 agis_schedconf.cvmfs.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc       415 Apr 19 12:40 workernode_map.json
[2026-04-19 15:48:40] drwx------. 5 boinc boinc      4096 Apr 19 12:40 pilot3
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc 193785197 Apr 19 15:46 HITS.49263200._041091.pool.root.1
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc       488 Apr 19 15:47 boinc_task_state.xml
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc        95 Apr 19 15:47 pilot_heartbeat.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc      1035 Apr 19 15:47 memory_monitor_summary.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc   1512404 Apr 19 15:47 agis_ddmendpoints.agis.ALL.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc    369018 Apr 19 15:47 log.49263200._041091.job.log.tgz.1
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc      6346 Apr 19 15:47 heartbeat_new.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc      6237 Apr 19 15:47 heartbeat.json
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc      4951 Apr 19 15:48 pilotlog.txt
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc   1051196 Apr 19 15:48 log.49263200._041091.job.log.1
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc      8192 Apr 19 15:48 boinc_mmap_file
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc        28 Apr 19 15:48 wrapper_checkpoint.txt
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc       357 Apr 19 15:48 output.list
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc       410 Apr 19 15:48 runtime_log
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc   1433600 Apr 19 15:48 result.tar.gz
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc      8438 Apr 19 15:48 runtime_log.err
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc       655 Apr 19 15:48 9eb0cde2af01.diag
[2026-04-19 15:48:40] -rw-r--r--. 1 boinc boinc     20624 Apr 19 15:48 stderr.txt
[2026-04-19 15:48:40] HITS file was successfully produced:
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc 193785197 Apr 19 15:46 shared/HITS.pool.root.1
[2026-04-19 15:48:40]  *** Contents of shared directory: ***
[2026-04-19 15:48:40] total 413128
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc 227145000 Apr 19 12:39 ATLAS.root_0
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc     15665 Apr 19 12:39 start_atlas.sh
[2026-04-19 15:48:40] -rw-r--r--. 2 boinc boinc    656941 Apr 19 12:39 input.tar.gz
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc 193785197 Apr 19 15:46 HITS.pool.root.1
[2026-04-19 15:48:40] -rw-------. 1 boinc boinc   1433600 Apr 19 15:48 result.tar.gz
15:48:41 (22540): run_atlas exited; CPU time 53238.819100
15:48:41 (22540): called boinc_finish(0)

</stderr_txt>
]]>

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