Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-24 13:59:20 (158714): vboxwrapper version 26210
2026-04-24 13:59:20 (158714): BOINC client version: 7.16.6
2026-04-24 13:59:20 (158714): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2026-04-24 13:59:20 (158714): Successfully copied 'init_data.xml' to the shared directory.
2026-04-24 13:59:20 (158714): Create VM. (boinc_79d9fd2565473e02, slot#0)
2026-04-24 13:59:20 (158714): Setting Memory Size for VM. (4800MB)
2026-04-24 13:59:20 (158714): Setting CPU Count for VM. (8)
2026-04-24 13:59:21 (158714): Setting Chipset Options for VM.
2026-04-24 13:59:21 (158714): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-24 13:59:21 (158714): Setting Boot Options for VM.
2026-04-24 13:59:21 (158714): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-24 13:59:21 (158714): Enabling VM Network Access.
2026-04-24 13:59:22 (158714): Disabling USB Support for VM.
2026-04-24 13:59:22 (158714): Disabling COM Port Support for VM.
2026-04-24 13:59:22 (158714): Disabling LPT Port Support for VM.
2026-04-24 13:59:22 (158714): Disabling Audio Support for VM.
2026-04-24 13:59:22 (158714): Disabling Clipboard Support for VM.
2026-04-24 13:59:22 (158714): Disabling Drag and Drop Support for VM.
2026-04-24 13:59:22 (158714): Adding storage controller(s) to VM.
2026-04-24 13:59:22 (158714): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-24 13:59:23 (158714): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-24 13:59:23 (158714): forwarding host port 57439 to guest port 80
2026-04-24 13:59:24 (158714): Enabling remote desktop for VM.
2026-04-24 13:59:24 (158714): Enabling shared directory for VM.
2026-04-24 13:59:24 (158714): Starting VM using VBoxManage interface. (boinc_79d9fd2565473e02, slot#0)
2026-04-24 13:59:25 (158714): Successfully started VM. (PID = '159154')
2026-04-24 13:59:25 (158714): Reporting VM Process ID to BOINC.
2026-04-24 13:59:25 (158714): Guest Log: BIOS: VirtualBox 6.1.50
2026-04-24 13:59:25 (158714): Guest Log: CPUID EDX: 0x178bfbff
2026-04-24 13:59:25 (158714): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-24 13:59:25 (158714): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-24 13:59:25 (158714): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-24 13:59:25 (158714): Detected: Web Application Enabled (http://localhost:57439)
2026-04-24 13:59:25 (158714): Detected: Remote Desktop Enabled (localhost:36807)
2026-04-24 13:59:25 (158714): Preference change detected
2026-04-24 13:59:25 (158714): Setting CPU throttle for VM. (90%)
2026-04-24 13:59:25 (158714): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-24 13:59:27 (158714): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-24 13:59:27 (158714): Guest Log: BIOS: Booting from Hard Disk...
2026-04-24 13:59:30 (158714): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-24 13:59:30 (158714): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-24 13:59:30 (158714): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-24 13:59:46 (158714): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-24 13:59:46 (158714): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-04-24 14:00:08 (158714): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000502 main     Log opened 2026-04-24T20:00:06.391112000Z
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000732 main     OS Product: Linux
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000809 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000874 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000939 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000940 main     Process ID: 1382
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.000942 main     Package type: LINUX_64BITS_GENERIC
2026-04-24 14:00:08 (158714): Guest Log: 00:00:00.004149 main     5.2.32 r132073 started. Verbose level = 0
2026-04-24 14:00:09 (158714): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-24 14:00:09 (158714): Guest Log: [INFO] Mounting shared directory
2026-04-24 14:00:09 (158714): Guest Log: [INFO] Checking for init_data.xml
2026-04-24 14:00:15 (158714): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-24 14:00:15 (158714): Guest Log: [INFO] Detected branch: prod
2026-04-24 14:00:18 (158714): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-24 14:00:18 (158714): Guest Log: Copying input files
2026-04-24 14:00:20 (158714): Guest Log: Copied input files into RunAtlas.
2026-04-24 14:00:20 (158714): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-24 14:00:20 (158714): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-24 14:00:20 (158714): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-24 14:00:20 (158714): Guest Log: Further information can be found at the LHC@home message board.
2026-04-24 14:00:31 (158714): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-24 14:00:31 (158714): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-24 14:00:31 (158714): Guest Log: 2.6.3.0 1659 0 30120 158823 4 1 3117648 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-04-24 14:00:35 (158714): Guest Log: copied the webapp to /var/www
2026-04-24 14:00:35 (158714): Guest Log: ATHENA_PROC_NUMBER=8
2026-04-24 14:00:35 (158714): Guest Log: ATHENA_CORE_NUMBER=8
2026-04-24 14:00:35 (158714): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-24 14:00:36 (158714): Guest Log:  *** Starting ATLAS job. (PandaID=7089522897 taskID=49263200) ***
2026-04-24 14:28:48 (158714): Preference change detected
2026-04-24 14:28:48 (158714): Setting CPU throttle for VM. (90%)
2026-04-24 14:28:48 (158714): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-24 15:28:50 (158714): Preference change detected
2026-04-24 15:28:50 (158714): Setting CPU throttle for VM. (90%)
2026-04-24 15:28:50 (158714): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-24 15:38:31 (158714): Status Report: Elapsed Time: '6000.000000'
2026-04-24 15:38:31 (158714): Status Report: CPU Time: '38734.560000'
2026-04-24 16:28:53 (158714): Preference change detected
2026-04-24 16:28:53 (158714): Setting CPU throttle for VM. (90%)
2026-04-24 16:28:53 (158714): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-24 17:17:37 (158714): Status Report: Elapsed Time: '12000.000000'
2026-04-24 17:17:37 (158714): Status Report: CPU Time: '81220.540000'
2026-04-24 17:28:56 (158714): Preference change detected
2026-04-24 17:28:56 (158714): Setting CPU throttle for VM. (90%)
2026-04-24 17:28:56 (158714): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-24 17:49:36 (158714): Guest Log:  *** Job finished ***
2026-04-24 17:49:36 (158714): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:20,043 | INFO     | all workflow threads have been joined
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:20,043 | INFO     | end of generic workflow (traces error code: 0)
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:20,044 | INFO     | traces error code: 0
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:20,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | INFO     | PID=6105 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | INFO     | found 0 job(s) in 20 queues
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,664 | INFO     | [monitor] control thread has ended
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,814 [wrapper] ==== pilot stdout END ====
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,825 [wrapper] ==== wrapper stdout RESUME ====
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,835 [wrapper] pilotpid: 6105
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,846 [wrapper] Pilot exit status: 0
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:33,927 [wrapper] pandaids: 7089522897
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:34,001 [wrapper] cleanup supervisor_pilot 28345 6106
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:34,021 [wrapper] Test setup, not cleaning
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:34,032 [wrapper] apfmon messages muted
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:34,044 [wrapper] ==== wrapper stdout END ====
2026-04-24 17:49:36 (158714): Guest Log: 2026-04-24 23:49:34,055 [wrapper] ==== wrapper stderr END ====
2026-04-24 17:49:36 (158714): Guest Log:  *** Error codes and diagnostics ***
2026-04-24 17:49:36 (158714): Guest Log:     "exeErrorCode": 0,
2026-04-24 17:49:36 (158714): Guest Log:     "pilotErrorCode": 0,
2026-04-24 17:49:36 (158714): Guest Log:  *** Listing of results directory ***
2026-04-24 17:49:36 (158714): Guest Log: total 197932
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas    644190 Apr 19 09:43 pilot3.tar.gz
2026-04-24 17:49:36 (158714): Guest Log: -rwx------. 1 atlas atlas     36322 Apr 19 10:06 runpilot2-wrapper.sh
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas      5094 Apr 19 10:06 queuedata.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas      6121 Apr 24 20:00 init_data.xml
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas    656928 Apr 24 20:00 input.tar.gz
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas     15665 Apr 24 20:00 start_atlas.sh
2026-04-24 17:49:36 (158714): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 24 20:00 EVNT.49263198._001796.pool.root.1 -> /data/./ATLAS.root_0
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Apr 24 20:00 pandaJob.out
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas    997606 Apr 24 20:01 agis_schedconf.cvmfs.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas       427 Apr 24 20:01 workernode_map.json
2026-04-24 17:49:36 (158714): Guest Log: drwx------. 5 atlas atlas      4096 Apr 24 20:02 pilot3
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas 195527406 Apr 24 23:48 HITS.49263200._063272.pool.root.1
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas      1048 Apr 24 23:48 memory_monitor_summary.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas        95 Apr 24 23:48 pilot_heartbeat.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas   1509089 Apr 24 23:48 agis_ddmendpoints.agis.ALL.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas    377647 Apr 24 23:48 log.49263200._063272.job.log.tgz.1
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas      6406 Apr 24 23:49 heartbeat_new.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas      6297 Apr 24 23:49 heartbeat.json
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas       744 Apr 24 23:49 pilotlog.txt
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas   1207901 Apr 24 23:49 log.49263200._063272.job.log.1
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas       357 Apr 24 23:49 output.list
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas       410 Apr 24 23:49 runtime_log
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas   1607680 Apr 24 23:49 result.tar.gz
2026-04-24 17:49:36 (158714): Guest Log: -rw-r--r--. 1 atlas atlas      8386 Apr 24 23:49 runtime_log.err
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas       664 Apr 24 23:49 a932d88e8f5f.diag
2026-04-24 17:49:36 (158714): Guest Log: Looking for outputfile HITS.49263200._063272.pool.root.1
2026-04-24 17:49:36 (158714): Guest Log: HITS file was successfully produced
2026-04-24 17:49:36 (158714): Guest Log: -rw-------. 1 atlas atlas 195527406 Apr 24 23:48 /home/atlas/RunAtlas/HITS.49263200._063272.pool.root.1
2026-04-24 17:49:37 (158714): Guest Log: Successfully finished the ATLAS job!
2026-04-24 17:49:37 (158714): Guest Log: Copying the results back to the shared directory!
2026-04-24 17:49:37 (158714): Guest Log:  *** Contents of shared directory: ***
2026-04-24 17:49:37 (158714): Guest Log: total 219772
2026-04-24 17:49:37 (158714): Guest Log: -rw-r--r--. 1 root root 222751187 Apr 24 19:59 ATLAS.root_0
2026-04-24 17:49:37 (158714): Guest Log: -rw-r--r--. 1 root root      6121 Apr 24 19:59 init_data.xml
2026-04-24 17:49:37 (158714): Guest Log: -rw-r--r--. 1 root root    656928 Apr 24 19:59 input.tar.gz
2026-04-24 17:49:37 (158714): Guest Log: -rw-r--r--. 1 root root   1607680 Apr 24 23:49 result.tar.gz
2026-04-24 17:49:37 (158714): Guest Log: -rw-r--r--. 1 root root     15665 Apr 24 19:59 start_atlas.sh
2026-04-24 17:49:37 (158714): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-24 17:49:37 (158714): VM Completion File Detected.
2026-04-24 17:49:37 (158714): Powering off VM.
2026-04-24 17:49:38 (158714): Successfully stopped VM.
2026-04-24 17:49:38 (158714): Deregistering VM. (boinc_79d9fd2565473e02, slot#0)
2026-04-24 17:49:38 (158714): Removing network bandwidth throttle group from VM.
2026-04-24 17:49:38 (158714): Removing VM from VirtualBox.
2026-04-24 17:49:44 (158714): called boinc_finish(0)

</stderr_txt>
]]>

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