Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:59:05 (5396): wrapper (7.7.26015): starting
13:59:05 (5396): wrapper: running run_atlas (--nthreads 8)
[2026-04-19 13:59:05] Arguments: --nthreads 8
[2026-04-19 13:59:05] Threads: 8
[2026-04-19 13:59:05] Checking for CVMFS
[2026-04-19 13:59:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 13:59:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 13:59:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 13:59:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 13:59:08] 2.11.2.0 6489 5454 86620 158619 1 53 19897686 25165824 1060 130560 0 1523850 99.890 471718 4979 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-19 13:59:08] CVMFS is ok
[2026-04-19 13:59:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 13:59:08] Checking for apptainer binary...
[2026-04-19 13:59:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 13:59:08] Running /usr/bin/apptainer --version
[2026-04-19 13:59:09] apptainer version 1.3.2-1.el7
[2026-04-19 13:59:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 13:59:25] cg-vwn368.simple-grid.lan
[2026-04-19 13:59:25] apptainer works
[2026-04-19 13:59:25] Set ATHENA_PROC_NUMBER=8
[2026-04-19 13:59:25] Set ATHENA_CORE_NUMBER=8
[2026-04-19 13:59:25] Starting ATLAS job with PandaID=7094830185
[2026-04-19 13:59:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 17:21:44]  *** The last 200 lines of the pilot log: ***
[2026-04-19 17:21:44] 2026-04-19 15:20:35,872 | INFO     | this job has now completed (state=finished)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,872 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,873 | INFO     | log transfer has been attempted: DONE
[2026-04-19 17:21:44] 2026-04-19 15:20:35,873 | INFO     | job 7094830185 has finished - writing final server update
[2026-04-19 17:21:44] 2026-04-19 15:20:35,873 | INFO     | total number of processed events: 400 (read)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,875 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7094830185/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,876 | INFO     | extracted standard info from prmon json
[2026-04-19 17:21:44] 2026-04-19 15:20:35,876 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 17:21:44] 2026-04-19 15:20:35,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 17:21:44] 2026-04-19 15:20:35,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 17:21:44] 2026-04-19 15:20:35,880 | INFO     | fitting pss+swap vs Time
[2026-04-19 17:21:44] 2026-04-19 15:20:35,881 | INFO     | sum of square deviations: 1963274020.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,882 | INFO     | sum of deviations: 61892892989.99999
[2026-04-19 17:21:44] 2026-04-19 15:20:35,882 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,882 | INFO     | mean y: 2474981.3675675676
[2026-04-19 17:21:44] 2026-04-19 15:20:35,882 | INFO     | intersect: 2474981.3675675676
[2026-04-19 17:21:44] 2026-04-19 15:20:35,882 | INFO     | chi2: 8.632740811098707
[2026-04-19 17:21:44] 2026-04-19 15:20:35,883 | INFO     | sum of square deviations: 1808350185.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,884 | INFO     | sum of deviations: 72886137248.99998
[2026-04-19 17:21:44] 2026-04-19 15:20:35,884 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,884 | INFO     | mean y: 2485534.4555555554
[2026-04-19 17:21:44] 2026-04-19 15:20:35,884 | INFO     | intersect: 2485534.4555555554
[2026-04-19 17:21:44] 2026-04-19 15:20:35,885 | INFO     | chi2: 7.963602410446578
[2026-04-19 17:21:44] 2026-04-19 15:20:35,885 | INFO     | current chi2=7.963602410446578 (change=7.751169823051435 %)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,885 | INFO     | right removable region: 179
[2026-04-19 17:21:44] 2026-04-19 15:20:35,885 | INFO     | sum of square deviations: 1808350185.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | sum of deviations: -4613539251.000009
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | mean y: 2540408.0222222223
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | intersect: 2540408.0222222223
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | chi2: 3.241411205554849
[2026-04-19 17:21:44] 2026-04-19 15:20:35,887 | INFO     | current chi2=3.241411205554849 (change=62.45211947765743 %)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,888 | INFO     | sum of square deviations: 1661798600.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,889 | INFO     | sum of deviations: -46362290306.00001
[2026-04-19 17:21:44] 2026-04-19 15:20:35,889 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,889 | INFO     | mean y: 2583647.16
[2026-04-19 17:21:44] 2026-04-19 15:20:35,889 | INFO     | intersect: 2583647.16
[2026-04-19 17:21:44] 2026-04-19 15:20:35,890 | INFO     | chi2: 1.0622923361780165
[2026-04-19 17:21:44] 2026-04-19 15:20:35,890 | INFO     | current chi2=1.0622923361780165 (change=67.22747381271614 %)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,890 | INFO     | sum of square deviations: 1523386702.5
[2026-04-19 17:21:44] 2026-04-19 15:20:35,891 | INFO     | sum of deviations: -52796999379.99999
[2026-04-19 17:21:44] 2026-04-19 15:20:35,891 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,892 | INFO     | mean y: 2590694.788235294
[2026-04-19 17:21:44] 2026-04-19 15:20:35,892 | INFO     | intersect: 2590694.788235294
[2026-04-19 17:21:44] 2026-04-19 15:20:35,892 | INFO     | chi2: 0.9568127255086702
[2026-04-19 17:21:44] 2026-04-19 15:20:35,892 | INFO     | current chi2=0.9568127255086702 (change=9.92943345979955 %)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,892 | INFO     | left removable region: 15
[2026-04-19 17:21:44] 2026-04-19 15:20:35,893 | INFO     | sum of square deviations: 1367709365.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,894 | INFO     | sum of deviations: -39374017517.00002
[2026-04-19 17:21:44] 2026-04-19 15:20:35,894 | INFO     | mean x (centered): 0.0
[2026-04-19 17:21:44] 2026-04-19 15:20:35,894 | INFO     | mean y: 2606075.8902439023
[2026-04-19 17:21:44] 2026-04-19 15:20:35,894 | INFO     | intersect: 2606075.8902439023
[2026-04-19 17:21:44] 2026-04-19 15:20:35,895 | INFO     | chi2: 0.15846137918692013
[2026-04-19 17:21:44] 2026-04-19 15:20:35,895 | INFO     | current memory leak: -28.79 B/s (using 164 data points, chi2=0.16)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | ..............................
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | . Timing measurements:
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | . get job = 0 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | . initial setup = 121 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | . payload setup = 327 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,896 | INFO     | . stage-in = 0 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,897 | INFO     | . payload execution = 11369 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,897 | INFO     | . stage-out = 1 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,897 | INFO     | . log creation = 0 s
[2026-04-19 17:21:44] 2026-04-19 15:20:35,897 | INFO     | ..............................
[2026-04-19 17:21:44] 2026-04-19 15:20:36,371 | INFO     | 
[2026-04-19 17:21:44] 2026-04-19 15:20:36,371 | INFO     | job summary report
[2026-04-19 17:21:44] 2026-04-19 15:20:36,371 | INFO     | --------------------------------------------------
[2026-04-19 17:21:44] 2026-04-19 15:20:36,371 | INFO     | PanDA job id: 7094830185
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | task id: 49545114
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | errors: (none)
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | pilot state: finished 
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | transexitcode: 0
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | exeerrorcode: 0
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | exeerrordiag: 
[2026-04-19 17:21:44] 2026-04-19 15:20:36,372 | INFO     | exitcode: 0
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | exitmsg: OK
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | cpuconsumptiontime: 53278 s
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | nevents: 400
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | neventsw: 0
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | pid: 13882
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | pgrp: 13882
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | corecount: 8
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | event service: False
[2026-04-19 17:21:44] 2026-04-19 15:20:36,373 | INFO     | sizes: {0: 2281022, 1: 2281707, 2: 2281962, 3: 2283536, 13: 2283564, 11701: 2313066, 11703: 2322064, 11704: 2322120, 11706: 2322314}
[2026-04-19 17:21:44] 2026-04-19 15:20:36,374 | INFO     | --------------------------------------------------
[2026-04-19 17:21:44] 2026-04-19 15:20:36,374 | INFO     | 
[2026-04-19 17:21:44] 2026-04-19 15:20:36,374 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | job 7094830185 has completed (purged errors)
[2026-04-19 17:21:44] 2026-04-19 15:20:36,434 | INFO     | overall cleanup function is called
[2026-04-19 17:21:44] 2026-04-19 15:20:37,442 | INFO     | --- collectZombieJob: --- 10, [13882]
[2026-04-19 17:21:44] 2026-04-19 15:20:37,443 | INFO     | zombie collector waiting for pid 13882
[2026-04-19 17:21:44] 2026-04-19 15:20:37,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 17:21:44] 2026-04-19 15:20:37,443 | INFO     | collected zombie processes
[2026-04-19 17:21:44] 2026-04-19 15:20:37,443 | INFO     | will attempt to kill all subprocesses of pid=13882
[2026-04-19 17:21:44] 2026-04-19 15:20:37,512 | INFO     | process IDs to be killed: [13882] (in reverse order)
[2026-04-19 17:21:44] 2026-04-19 15:20:37,579 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 17:21:44] 2026-04-19 15:20:37,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 17:21:44] 2026-04-19 15:20:37,581 | INFO     | did not find any defunct processes belonging to 13882
[2026-04-19 17:21:44] 2026-04-19 15:20:37,583 | INFO     | did not find any defunct processes belonging to 13882
[2026-04-19 17:21:44] 2026-04-19 15:20:37,583 | INFO     | Ready for new job
[2026-04-19 17:21:44] 2026-04-19 15:20:37,584 | INFO     | **************************************
[2026-04-19 17:21:44] 2026-04-19 15:20:37,585 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 17:21:44] 2026-04-19 15:20:37,585 | INFO     | **************************************
[2026-04-19 17:21:44] 2026-04-19 15:20:37,585 | INFO     | 
[2026-04-19 17:21:44] 2026-04-19 15:20:37,585 | INFO     | pilot is running in a VM
[2026-04-19 17:21:44] 2026-04-19 15:20:37,585 | INFO     | architecture information:
[2026-04-19 17:21:44] 2026-04-19 15:20:37,587 | INFO     | executing command: cat /etc/os-release
[2026-04-19 17:21:44] 2026-04-19 15:20:37,616 | INFO     | cat /etc/os-release:
[2026-04-19 17:21:44] NAME="CentOS Linux"
[2026-04-19 17:21:44] VERSION="7 (Core)"
[2026-04-19 17:21:44] ID="centos"
[2026-04-19 17:21:44] ID_LIKE="rhel fedora"
[2026-04-19 17:21:44] VERSION_ID="7"
[2026-04-19 17:21:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 17:21:44] ANSI_COLOR="0;31"
[2026-04-19 17:21:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 17:21:44] HOME_URL="https://www.centos.org/"
[2026-04-19 17:21:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 17:21:44] 
[2026-04-19 17:21:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 17:21:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 17:21:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 17:21:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 17:21:44] 
[2026-04-19 17:21:44] 2026-04-19 15:20:37,616 | INFO     | **************************************
[2026-04-19 17:21:44] 2026-04-19 15:20:38,119 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-19 17:21:44] 2026-04-19 15:20:38,140 | INFO     | sufficient remaining disk space (497788387328 B)
[2026-04-19 17:21:44] 2026-04-19 15:20:38,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 17:21:44] 2026-04-19 15:20:38,140 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 17:21:44] 2026-04-19 15:20:38,140 | INFO     | update_server=False
[2026-04-19 17:21:44] 2026-04-19 15:20:38,140 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 17:21:44] 2026-04-19 15:20:38,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 17:21:44] 2026-04-19 15:20:38,141 | INFO     | aborting loop
[2026-04-19 17:21:44] 2026-04-19 15:20:38,714 | INFO     | all data control threads have been joined
[2026-04-19 17:21:44] 2026-04-19 15:20:38,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 17:21:44] 2026-04-19 15:20:39,066 | INFO     | all job control threads have been joined
[2026-04-19 17:21:44] 2026-04-19 15:20:39,146 | INFO     | [job] retrieve thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:39,147 | INFO     | [job] job monitor thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:39,208 | INFO     | [job] validate thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:39,391 | INFO     | all payload control threads have been joined
[2026-04-19 17:21:44] 2026-04-19 15:20:39,720 | INFO     | [data] control thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:39,818 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:39,855 | INFO     | [data] copytool_in thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,072 | INFO     | [job] control thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,137 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,352 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,370 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,396 | INFO     | [payload] control thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,439 | INFO     | [payload] validate_post thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 17:21:44] 2026-04-19 15:20:40,644 | INFO     | [payload] failed_post thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:40,817 | INFO     | [data] copytool_out thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:41,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 17:21:44] 2026-04-19 15:20:42,017 | INFO     | [job] queue monitor thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:20:44,581 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 17:21:44] 2026-04-19 15:21:08,592 | INFO     | PID=9409 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-19 17:21:44] 2026-04-19 15:21:08,593 | INFO     | .. there are 2 such processes running
[2026-04-19 17:21:44] 2026-04-19 15:21:08,594 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 17:21:44] 2026-04-19 15:21:08,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 17:21:44] 2026-04-19 15:21:08,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 17:21:44] 2026-04-19 15:21:36,743 | INFO     | [monitor] cgroup control has ended
[2026-04-19 17:21:44] 2026-04-19 15:21:38,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033387956032)>', '<ExcThread(monitor, started 140032576845568)>']
[2026-04-19 17:21:44] 2026-04-19 15:21:39,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 17:21:44] 2026-04-19 15:21:39,643 | INFO     | [monitor] control thread has ended
[2026-04-19 17:21:44] 2026-04-19 15:21:43,846 | INFO     | all workflow threads have been joined
[2026-04-19 17:21:44] 2026-04-19 15:21:43,846 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 17:21:44] 2026-04-19 15:21:43,847 | INFO     | traces error code: 0
[2026-04-19 17:21:44] 2026-04-19 15:21:43,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 17:21:44] 2026-04-19 15:21:44,010 [wrapper] ==== pilot stdout END ====
[2026-04-19 17:21:44] 2026-04-19 15:21:44,013 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 17:21:44] 2026-04-19 15:21:44,018 [wrapper] pilotpid: 9409
[2026-04-19 17:21:44] 2026-04-19 15:21:44,022 [wrapper] Pilot exit status: 0
[2026-04-19 17:21:44] 2026-04-19 15:21:44,046 [wrapper] pandaids: 7094830185
[2026-04-19 17:21:44] 2026-04-19 15:21:44,084 [wrapper] cleanup supervisor_pilot  2407 9410
[2026-04-19 17:21:44] 2026-04-19 15:21:44,088 [wrapper] Test setup, not cleaning
[2026-04-19 17:21:44] 2026-04-19 15:21:44,098 [wrapper] apfmon messages muted
[2026-04-19 17:21:44] 2026-04-19 15:21:44,101 [wrapper] ==== wrapper stdout END ====
[2026-04-19 17:21:44] 2026-04-19 15:21:44,105 [wrapper] ==== wrapper stderr END ====
[2026-04-19 17:21:44]  *** Error codes and diagnostics ***
[2026-04-19 17:21:44]     "exeErrorCode": 0,
[2026-04-19 17:21:44]     "pilotErrorCode": 0,
[2026-04-19 17:21:44]  *** Listing of results directory ***
[2026-04-19 17:21:44] total 463428
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc    644190 Apr 19 09:40 pilot3.tar.gz
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc      5094 Apr 19 10:02 queuedata.json
[2026-04-19 17:21:44] -rwx------. 1 boinc boinc     36322 Apr 19 10:02 runpilot2-wrapper.sh
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc       100 Apr 19 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 17:21:44] -rwxr-xr-x. 1 boinc boinc      7986 Apr 19 13:59 run_atlas
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc       105 Apr 19 13:59 job.xml
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc      6305 Apr 19 13:59 init_data.xml
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc 280216435 Apr 19 13:59 EVNT.49539591._000685.pool.root.1
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc     15665 Apr 19 13:59 start_atlas.sh
[2026-04-19 17:21:44] drwxrwx--x. 2 boinc boinc        68 Apr 19 13:59 shared
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc    656937 Apr 19 13:59 input.tar.gz
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc         0 Apr 19 13:59 boinc_lockfile
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc      2605 Apr 19 13:59 pandaJob.out
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc       415 Apr 19 14:05 workernode_map.json
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc    997318 Apr 19 14:05 agis_schedconf.cvmfs.json
[2026-04-19 17:21:44] drwx------. 5 boinc boinc      4096 Apr 19 14:05 pilot3
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc 187350687 Apr 19 17:19 HITS.49545114._017169.pool.root.1
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc       489 Apr 19 17:20 boinc_task_state.xml
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc      1022 Apr 19 17:20 memory_monitor_summary.json
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc   1512404 Apr 19 17:20 agis_ddmendpoints.agis.ALL.json
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc    375641 Apr 19 17:20 log.49545114._017169.job.log.tgz.1
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc      6351 Apr 19 17:20 heartbeat_new.json
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc      6242 Apr 19 17:20 heartbeat.json
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc        95 Apr 19 17:21 pilot_heartbeat.json
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc      8192 Apr 19 17:21 boinc_mmap_file
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc        28 Apr 19 17:21 wrapper_checkpoint.txt
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc      4878 Apr 19 17:21 pilotlog.txt
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc   1094282 Apr 19 17:21 log.49545114._017169.job.log.1
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc       357 Apr 19 17:21 output.list
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc       410 Apr 19 17:21 runtime_log
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc   1484800 Apr 19 17:21 result.tar.gz
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc      8438 Apr 19 17:21 runtime_log.err
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc       656 Apr 19 17:21 8c0c095578b9.diag
[2026-04-19 17:21:44] -rw-r--r--. 1 boinc boinc     20635 Apr 19 17:21 stderr.txt
[2026-04-19 17:21:44] HITS file was successfully produced:
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc 187350687 Apr 19 17:19 shared/HITS.pool.root.1
[2026-04-19 17:21:44]  *** Contents of shared directory: ***
[2026-04-19 17:21:44] total 458724
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc 280216435 Apr 19 13:59 ATLAS.root_0
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc     15665 Apr 19 13:59 start_atlas.sh
[2026-04-19 17:21:44] -rw-r--r--. 2 boinc boinc    656937 Apr 19 13:59 input.tar.gz
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc 187350687 Apr 19 17:19 HITS.pool.root.1
[2026-04-19 17:21:44] -rw-------. 1 boinc boinc   1484800 Apr 19 17:21 result.tar.gz
17:21:45 (5396): run_atlas exited; CPU time 53386.668162
17:21:45 (5396): called boinc_finish(0)

</stderr_txt>
]]>

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