Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:58:07 (2431755): wrapper (7.7.26015): starting
03:58:07 (2431755): wrapper: running run_atlas (--nthreads 12)
[2026-04-19 03:58:07] Arguments: --nthreads 12
[2026-04-19 03:58:07] Threads: 12
[2026-04-19 03:58:07] Checking for CVMFS
[2026-04-19 03:58:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 03:58:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 03:58:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 03:58:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 03:58:07] 2.13.3.0 42195 236999 225460 158612 2 681 23290277 32935937 11184 16776704 0 978846275 99.702 795608726 32428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-19 03:58:07] CVMFS is ok
[2026-04-19 03:58:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 03:58:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 03:58:07] Further information can be found at the LHC@home message board.
[2026-04-19 03:58:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 03:58:07] Checking for apptainer binary...
[2026-04-19 03:58:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 03:58:07] Running /usr/bin/apptainer --version
[2026-04-19 03:58:07] apptainer version 1.4.5-2.el9
[2026-04-19 03:58:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 03:58:07] c-6-3.aglt2.org
[2026-04-19 03:58:07] apptainer works
[2026-04-19 03:58:07] Set ATHENA_PROC_NUMBER=12
[2026-04-19 03:58:07] Set ATHENA_CORE_NUMBER=12
[2026-04-19 03:58:07] Starting ATLAS job with PandaID=7102873946
[2026-04-19 03:58:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 04:01:39]  *** The last 200 lines of the pilot log: ***
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | found no stored workdir sizes
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | INFO     | will not add max space = 0 B to job metrics
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | WARNING  | wrong length of table data, x=[1776585535.0], y=[1011.0] (must be same and length>=4)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . Timing measurements:
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . get job = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . initial setup = 11 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload setup = 10 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-in = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload execution = 15 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-out = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | . log creation = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7102873946/pilotlog.txt
[2026-04-19 04:01:39] 2026-04-19 08:01:07,283 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-04-19 04:01:39] - Log from pilotlog.txt -
[2026-04-19 04:01:39] 2026-04-19 08:01:07,261 | INFO     | extracted standard info from prmon json
[2026-04-19 04:01:39] 2026-04-19 08:01:07,261 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | found no stored workdir sizes
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | INFO     | will not add max space = 0 B to job metrics
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | WARNING  | wrong length of table data, x=[1776585535.0], y=[1011.0] (must be same and length>=4)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . Timing measurements:
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . get job = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . initial setup = 11 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload setup = 10 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-in = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload execution = 15 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-out = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | . log creation = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7102873946/pilotlog.txt
[2026-04-19 04:01:39] 2026-04-19 08:01:07,283 | WARNING  | 
[2026-04-19 04:01:39] [begin log extracts]
[2026-04-19 04:01:39] - Log from pilotlog.txt -
[2026-04-19 04:01:39] 2026-04-19 08:01:07,261 | INFO     | extracted standard info from prmon json
[2026-04-19 04:01:39] 2026-04-19 08:01:07,261 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | WARNING  | found no stored workdir sizes
[2026-04-19 04:01:39] 2026-04-19 08:01:07,262 | INFO     | will not add max space = 0 B to job metrics
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | WARNING  | wrong length of table data, x=[1776585535.0], y=[1011.0] (must be same and length>=4)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,263 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . Timing measurements:
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . get job = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . initial setup = 11 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload setup = 10 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-in = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . payload execution = 15 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,264 | INFO     | . stage-out = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | . log creation = 0 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | ..............................
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-04-19 04:01:39] 2026-04-19 08:01:07,265 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7102873946/pilotlog.txt
[2026-04-19 04:01:39] [end log extracts]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,284 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,285 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: File EVNT.498
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | 
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | job summary report
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | --------------------------------------------------
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | PanDA job id: 7102873946
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | task id: 49820244
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-04-19 07:59:00,888 CRITICAL Transform executor raised TransformValidationExceptio
[2026-04-19 04:01:39] 2026-04-19 08:01:07,499 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | pilot state: failed 
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | transexitcode: 66
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | exeerrorcode: 66
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | exeerrordiag: File EVNT.49820242._000031.pool.root.1 did not pass corruption test
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | exitcode: 66
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | exitmsg: File EVNT.49820242._000031.pool.root.1 did not pass corruption test
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | cpuconsumptiontime: 20 s
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | nevents: 0
[2026-04-19 04:01:39] 2026-04-19 08:01:07,500 | INFO     | neventsw: 0
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | pid: 2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | pgrp: 2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | corecount: 12
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | event service: False
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | sizes: {0: 2281602, 1: 2283431, 11: 2283431, 29: 2299590, 30: 2303885, 31: 2303913, 148: 2304207}
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | --------------------------------------------------
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | 
[2026-04-19 04:01:39] 2026-04-19 08:01:07,501 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-19 04:01:39] 2026-04-19 08:01:07,521 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | job 7102873946 has completed (purged errors)
[2026-04-19 04:01:39] 2026-04-19 08:01:07,524 | INFO     | overall cleanup function is called
[2026-04-19 04:01:39] 2026-04-19 08:01:08,531 | INFO     | --- collectZombieJob: --- 10, [2441670]
[2026-04-19 04:01:39] 2026-04-19 08:01:08,531 | INFO     | zombie collector waiting for pid 2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:08,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 04:01:39] 2026-04-19 08:01:08,532 | INFO     | collected zombie processes
[2026-04-19 04:01:39] 2026-04-19 08:01:08,532 | INFO     | will attempt to kill all subprocesses of pid=2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:08,825 | INFO     | process IDs to be killed: [2441670] (in reverse order)
[2026-04-19 04:01:39] 2026-04-19 08:01:08,915 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 04:01:39] 2026-04-19 08:01:08,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 04:01:39] 2026-04-19 08:01:08,928 | INFO     | did not find any defunct processes belonging to 2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:08,940 | INFO     | did not find any defunct processes belonging to 2441670
[2026-04-19 04:01:39] 2026-04-19 08:01:08,940 | INFO     | Ready for new job
[2026-04-19 04:01:39] 2026-04-19 08:01:08,942 | INFO     | **************************************
[2026-04-19 04:01:39] 2026-04-19 08:01:08,942 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 04:01:39] 2026-04-19 08:01:08,942 | INFO     | **************************************
[2026-04-19 04:01:39] 2026-04-19 08:01:08,942 | INFO     | 
[2026-04-19 04:01:39] 2026-04-19 08:01:08,944 | INFO     | architecture information:
[2026-04-19 04:01:39] 2026-04-19 08:01:08,945 | INFO     | executing command: cat /etc/os-release
[2026-04-19 04:01:39] 2026-04-19 08:01:08,960 | INFO     | cat /etc/os-release:
[2026-04-19 04:01:39] NAME="CentOS Linux"
[2026-04-19 04:01:39] VERSION="7 (Core)"
[2026-04-19 04:01:39] ID="centos"
[2026-04-19 04:01:39] ID_LIKE="rhel fedora"
[2026-04-19 04:01:39] VERSION_ID="7"
[2026-04-19 04:01:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 04:01:39] ANSI_COLOR="0;31"
[2026-04-19 04:01:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 04:01:39] HOME_URL="https://www.centos.org/"
[2026-04-19 04:01:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 04:01:39] 
[2026-04-19 04:01:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 04:01:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 04:01:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 04:01:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 04:01:39] 
[2026-04-19 04:01:39] 2026-04-19 08:01:08,961 | INFO     | **************************************
[2026-04-19 04:01:39] 2026-04-19 08:01:09,463 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-19 04:01:39] 2026-04-19 08:01:09,480 | INFO     | sufficient remaining disk space (71264370688 B)
[2026-04-19 04:01:39] 2026-04-19 08:01:09,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | INFO     | update_server=False
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 04:01:39] 2026-04-19 08:01:09,481 | INFO     | aborting loop
[2026-04-19 04:01:39] 2026-04-19 08:01:09,939 | INFO     | all job control threads have been joined
[2026-04-19 04:01:39] 2026-04-19 08:01:09,960 | INFO     | all data control threads have been joined
[2026-04-19 04:01:39] 2026-04-19 08:01:10,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 04:01:39] 2026-04-19 08:01:10,298 | INFO     | all payload control threads have been joined
[2026-04-19 04:01:39] 2026-04-19 08:01:10,486 | INFO     | [job] retrieve thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,487 | INFO     | [job] job monitor thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,548 | INFO     | [payload] validate_post thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,663 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,676 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,944 | INFO     | [job] control thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,956 | INFO     | [data] copytool_in thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:10,965 | INFO     | [data] control thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:11,229 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:11,303 | INFO     | [payload] control thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:11,482 | INFO     | [payload] failed_post thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:11,626 | INFO     | [job] validate thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:11,928 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:12,091 | INFO     | [data] copytool_out thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:12,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 04:01:39] 2026-04-19 08:01:13,409 | INFO     | [job] queue monitor thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:13,487 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 04:01:39] 2026-04-19 08:01:27,789 | INFO     | [monitor] cgroup control has ended
[2026-04-19 04:01:39] 2026-04-19 08:01:29,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398066943808)>', '<ExcThread(monitor, started 140397430953728)>']
[2026-04-19 04:01:39] 2026-04-19 08:01:34,778 | INFO     | all workflow threads have been joined
[2026-04-19 04:01:39] 2026-04-19 08:01:34,778 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 04:01:39] 2026-04-19 08:01:34,778 | INFO     | traces error code: 0
[2026-04-19 04:01:39] 2026-04-19 08:01:34,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 04:01:39] 2026-04-19 08:01:39,522 | INFO     | PID=2436148 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-19 04:01:39] 2026-04-19 08:01:39,523 | INFO     | .. there are 12 such processes running
[2026-04-19 04:01:39] 2026-04-19 08:01:39,523 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 04:01:39] 2026-04-19 08:01:39,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 04:01:39] 2026-04-19 08:01:39,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 04:01:39] 2026-04-19 08:01:39,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 04:01:39] 2026-04-19 08:01:39,524 | INFO     | [monitor] control thread has ended
[2026-04-19 04:01:39] 2026-04-19 08:01:39,658 [wrapper] ==== pilot stdout END ====
[2026-04-19 04:01:39] 2026-04-19 08:01:39,661 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 04:01:39] 2026-04-19 08:01:39,663 [wrapper] pilotpid: 2436148
[2026-04-19 04:01:39] 2026-04-19 08:01:39,666 [wrapper] Pilot exit status: 0
[2026-04-19 04:01:39] 2026-04-19 08:01:39,680 [wrapper] pandaids: 7102873946
[2026-04-19 04:01:39] 2026-04-19 08:01:39,737 [wrapper] cleanup supervisor_pilot 2436154 2436149
[2026-04-19 04:01:39] 2026-04-19 08:01:39,740 [wrapper] Test setup, not cleaning
[2026-04-19 04:01:39] 2026-04-19 08:01:39,743 [wrapper] apfmon messages muted
[2026-04-19 04:01:39] 2026-04-19 08:01:39,746 [wrapper] ==== wrapper stdout END ====
[2026-04-19 04:01:39] 2026-04-19 08:01:39,749 [wrapper] ==== wrapper stderr END ====
[2026-04-19 04:01:39]  *** Error codes and diagnostics ***
[2026-04-19 04:01:39]     "exeErrorCode": 66,
[2026-04-19 04:01:39]     "exeErrorDiag": "File EVNT.49820242._000031.pool.root.1 did not pass corruption test",
[2026-04-19 04:01:39]     "pilotErrorCode": 1305,
[2026-04-19 04:01:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: File EVNT.49820242._000031.pool.root.1 did not pass corruption test",
[2026-04-19 04:01:39]  *** Listing of results directory ***
[2026-04-19 04:01:39] total 2187052
[2026-04-19 04:01:39] -rwx------. 1 boincer umatlas      36322 Apr 18 23:01 runpilot2-wrapper.sh
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas     644190 Apr 19 02:37 pilot3.tar.gz
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas       5094 Apr 19 03:04 queuedata.json
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas        100 Apr 19 03:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 04:01:39] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 19 03:58 run_atlas
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas        105 Apr 19 03:58 job.xml
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas 2235290498 Apr 19 03:58 ATLAS.root_0
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas      15615 Apr 19 03:58 start_atlas.sh
[2026-04-19 04:01:39] drwxrwx--x. 2 boincer umatlas       4096 Apr 19 03:58 shared
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas     656913 Apr 19 03:58 input.tar.gz
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas          0 Apr 19 03:58 boinc_lockfile
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas       2549 Apr 19 03:58 pandaJob.out
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas         57 Apr 19 03:58 setup.sh.local
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas     997689 Apr 19 03:58 agis_schedconf.cvmfs.json
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas    1512404 Apr 19 03:58 agis_ddmendpoints.agis.ALL.json
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas        438 Apr 19 03:58 workernode_map.json
[2026-04-19 04:01:39] drwx------. 5 boincer umatlas       4096 Apr 19 03:58 pilot3
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas        977 Apr 19 03:59 memory_monitor_summary.json
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas      16838 Apr 19 03:59 log.49820244._005253.job.log.tgz.1
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas       6569 Apr 19 04:00 init_data.xml
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas       5890 Apr 19 04:01 heartbeat_new.json
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas       5852 Apr 19 04:01 heartbeat.json
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas       8192 Apr 19 04:01 boinc_mmap_file
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas         22 Apr 19 04:01 wrapper_checkpoint.txt
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas        481 Apr 19 04:01 boinc_task_state.xml
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas         95 Apr 19 04:01 pilot_heartbeat.json
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas        823 Apr 19 04:01 pilotlog.txt
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas      81079 Apr 19 04:01 log.49820244._005253.job.log.1
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas        188 Apr 19 04:01 output.list
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas        410 Apr 19 04:01 runtime_log
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas     112640 Apr 19 04:01 result.tar.gz
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas       8745 Apr 19 04:01 runtime_log.err
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas        635 Apr 19 04:01 45816d5e75c0.diag
[2026-04-19 04:01:39] -rw-r--r--. 1 boincer umatlas      21746 Apr 19 04:01 stderr.txt
[2026-04-19 04:01:39] No HITS result produced
[2026-04-19 04:01:39]  *** Contents of shared directory: ***
[2026-04-19 04:01:39] total 2183680
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas 2235290498 Apr 19 03:58 ATLAS.root_0
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas      15615 Apr 19 03:58 start_atlas.sh
[2026-04-19 04:01:39] -rw-r--r--. 2 boincer umatlas     656913 Apr 19 03:58 input.tar.gz
[2026-04-19 04:01:39] -rw-------. 1 boincer umatlas     112640 Apr 19 04:01 result.tar.gz
04:01:40 (2431755): run_atlas exited; CPU time 21.553213
04:01:40 (2431755): called boinc_finish(0)

</stderr_txt>
]]>

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