Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:18:16 (2518): wrapper (7.7.26015): starting
12:18:16 (2518): wrapper: running run_atlas (--nthreads 8)
[2026-04-19 12:18:16] Arguments: --nthreads 8
[2026-04-19 12:18:16] Threads: 8
[2026-04-19 12:18:16] Checking for CVMFS
[2026-04-19 12:18:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 12:18:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 12:18:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 12:18:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 12:18:21] 2.11.2.0 10636 5354 93168 158617 0 53 21841925 25165824 541 130560 0 1465940 99.811 3586094 21141 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-19 12:18:21] CVMFS is ok
[2026-04-19 12:18:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 12:18:21] Checking for apptainer binary...
[2026-04-19 12:18:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 12:18:22] Running /usr/bin/apptainer --version
[2026-04-19 12:18:22] apptainer version 1.3.2-1.el7
[2026-04-19 12:18:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 12:18:46] cg-vwn366.simple-grid.lan
[2026-04-19 12:18:46] apptainer works
[2026-04-19 12:18:46] Set ATHENA_PROC_NUMBER=8
[2026-04-19 12:18:46] Set ATHENA_CORE_NUMBER=8
[2026-04-19 12:18:46] Starting ATLAS job with PandaID=7087722675
[2026-04-19 12:18:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 15:04:24]  *** The last 200 lines of the pilot log: ***
[2026-04-19 15:04:24] 2026-04-19 13:03:22,303 | INFO     | monitor loop #710: job 0:7087722675 is in state 'finished'
[2026-04-19 15:04:24] 2026-04-19 13:03:22,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,208 | INFO     | job 7087722675 has state=finished
[2026-04-19 15:04:24] 2026-04-19 13:03:23,208 | INFO     | preparing for final server update for job 7087722675 in state='finished'
[2026-04-19 15:04:24] 2026-04-19 13:03:23,209 | INFO     | reading metadata from: /var/lib/boinc/slots/6/PanDA_Pilot-7087722675/jobReport.json
[2026-04-19 15:04:24] 2026-04-19 13:03:23,211 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/6/workernode_map.json
[2026-04-19 15:04:24] 2026-04-19 13:03:23,212 | INFO     | this job has now completed (state=finished)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,212 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,212 | INFO     | log transfer has been attempted: DONE
[2026-04-19 15:04:24] 2026-04-19 13:03:23,212 | INFO     | job 7087722675 has finished - writing final server update
[2026-04-19 15:04:24] 2026-04-19 13:03:23,213 | INFO     | total number of processed events: 400 (read)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,215 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7087722675/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,215 | INFO     | extracted standard info from prmon json
[2026-04-19 15:04:24] 2026-04-19 13:03:23,215 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 15:04:24] 2026-04-19 13:03:23,216 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 15:04:24] 2026-04-19 13:03:23,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 15:04:24] 2026-04-19 13:03:23,219 | INFO     | fitting pss+swap vs Time
[2026-04-19 15:04:24] 2026-04-19 13:03:23,220 | INFO     | sum of square deviations: 1154663510.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,221 | INFO     | sum of deviations: -3645924982.000003
[2026-04-19 15:04:24] 2026-04-19 13:03:23,221 | INFO     | mean x (centered): 0.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,221 | INFO     | mean y: 2522499.064516129
[2026-04-19 15:04:24] 2026-04-19 13:03:23,221 | INFO     | intersect: 2522499.064516129
[2026-04-19 15:04:24] 2026-04-19 13:03:23,222 | INFO     | chi2: 1.709964905107518
[2026-04-19 15:04:24] 2026-04-19 13:03:23,222 | INFO     | sum of square deviations: 1046484737.5
[2026-04-19 15:04:24] 2026-04-19 13:03:23,223 | INFO     | sum of deviations: -3222302613.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,223 | INFO     | mean x (centered): 0.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,224 | INFO     | mean y: 2523096.453333333
[2026-04-19 15:04:24] 2026-04-19 13:03:23,224 | INFO     | intersect: 2523096.453333333
[2026-04-19 15:04:24] 2026-04-19 13:03:23,224 | INFO     | chi2: 1.710252605540842
[2026-04-19 15:04:24] 2026-04-19 13:03:23,224 | INFO     | current chi2=1.710252605540842 (change=-0.01682493204770447 %)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,224 | INFO     | right removable region: 149
[2026-04-19 15:04:24] 2026-04-19 13:03:23,225 | INFO     | sum of square deviations: 1046484737.5
[2026-04-19 15:04:24] 2026-04-19 13:03:23,226 | INFO     | sum of deviations: -27891337836.5
[2026-04-19 15:04:24] 2026-04-19 13:03:23,226 | INFO     | mean x (centered): 0.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,226 | INFO     | mean y: 2556177.6066666665
[2026-04-19 15:04:24] 2026-04-19 13:03:23,226 | INFO     | intersect: 2556177.6066666665
[2026-04-19 15:04:24] 2026-04-19 13:03:23,227 | INFO     | chi2: 0.1516847651718928
[2026-04-19 15:04:24] 2026-04-19 13:03:23,227 | INFO     | current chi2=0.1516847651718928 (change=91.12936384139677 %)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,227 | INFO     | sum of square deviations: 945282840.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,228 | INFO     | sum of deviations: -25849935718.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,229 | INFO     | mean x (centered): 0.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,229 | INFO     | mean y: 2553042.3172413795
[2026-04-19 15:04:24] 2026-04-19 13:03:23,229 | INFO     | intersect: 2553042.3172413795
[2026-04-19 15:04:24] 2026-04-19 13:03:23,230 | INFO     | chi2: 0.1413588499260147
[2026-04-19 15:04:24] 2026-04-19 13:03:23,230 | INFO     | current chi2=0.1413588499260147 (change=6.807483424044952 %)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,230 | INFO     | left removable region: 10
[2026-04-19 15:04:24] 2026-04-19 13:03:23,230 | INFO     | sum of square deviations: 832722590.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,231 | INFO     | sum of deviations: -24563892786.999996
[2026-04-19 15:04:24] 2026-04-19 13:03:23,232 | INFO     | mean x (centered): 0.0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,232 | INFO     | mean y: 2555134.3741007196
[2026-04-19 15:04:24] 2026-04-19 13:03:23,232 | INFO     | intersect: 2555134.3741007196
[2026-04-19 15:04:24] 2026-04-19 13:03:23,232 | INFO     | chi2: 0.13646237942593695
[2026-04-19 15:04:24] 2026-04-19 13:03:23,232 | INFO     | current memory leak: -29.50 B/s (using 139 data points, chi2=0.14)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | ..............................
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . Timing measurements:
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . get job = 0 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . initial setup = 119 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . payload setup = 18 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . stage-in = 0 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,233 | INFO     | . payload execution = 9461 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,234 | INFO     | . stage-out = 0 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,234 | INFO     | . log creation = 0 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,234 | INFO     | ..............................
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | 
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | job summary report
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | --------------------------------------------------
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | PanDA job id: 7087722675
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | task id: 49263200
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | errors: (none)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 15:04:24] 2026-04-19 13:03:23,350 | INFO     | pilot state: finished 
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | transexitcode: 0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | exeerrorcode: 0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | exeerrordiag: 
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | exitcode: 0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | exitmsg: OK
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | cpuconsumptiontime: 57075 s
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | nevents: 400
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | neventsw: 0
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | pid: 11187
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | pgrp: 11187
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | corecount: 8
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | event service: False
[2026-04-19 15:04:24] 2026-04-19 13:03:23,351 | INFO     | sizes: {0: 2282012, 1: 2283440, 11: 2283468, 9482: 2311926, 9483: 2311925, 9485: 2320979, 9488: 2321163, 9490: 2321421}
[2026-04-19 15:04:24] 2026-04-19 13:03:23,352 | INFO     | --------------------------------------------------
[2026-04-19 15:04:24] 2026-04-19 13:03:23,352 | INFO     | 
[2026-04-19 15:04:24] 2026-04-19 13:03:23,352 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-19 15:04:24] 2026-04-19 13:03:23,388 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,388 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,388 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,388 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,390 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 15:04:24] 2026-04-19 13:03:23,391 | INFO     | job 7087722675 has completed (purged errors)
[2026-04-19 15:04:24] 2026-04-19 13:03:23,391 | INFO     | overall cleanup function is called
[2026-04-19 15:04:24] 2026-04-19 13:03:24,399 | INFO     | --- collectZombieJob: --- 10, [11187]
[2026-04-19 15:04:24] 2026-04-19 13:03:24,399 | INFO     | zombie collector waiting for pid 11187
[2026-04-19 15:04:24] 2026-04-19 13:03:24,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 15:04:24] 2026-04-19 13:03:24,399 | INFO     | collected zombie processes
[2026-04-19 15:04:24] 2026-04-19 13:03:24,399 | INFO     | will attempt to kill all subprocesses of pid=11187
[2026-04-19 15:04:24] 2026-04-19 13:03:24,463 | INFO     | process IDs to be killed: [11187] (in reverse order)
[2026-04-19 15:04:24] 2026-04-19 13:03:24,515 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 15:04:24] 2026-04-19 13:03:24,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 15:04:24] 2026-04-19 13:03:24,518 | INFO     | did not find any defunct processes belonging to 11187
[2026-04-19 15:04:24] 2026-04-19 13:03:24,519 | INFO     | did not find any defunct processes belonging to 11187
[2026-04-19 15:04:24] 2026-04-19 13:03:24,520 | INFO     | Ready for new job
[2026-04-19 15:04:24] 2026-04-19 13:03:24,521 | INFO     | **************************************
[2026-04-19 15:04:24] 2026-04-19 13:03:24,522 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 15:04:24] 2026-04-19 13:03:24,522 | INFO     | **************************************
[2026-04-19 15:04:24] 2026-04-19 13:03:24,522 | INFO     | 
[2026-04-19 15:04:24] 2026-04-19 13:03:24,522 | INFO     | pilot is running in a VM
[2026-04-19 15:04:24] 2026-04-19 13:03:24,522 | INFO     | architecture information:
[2026-04-19 15:04:24] 2026-04-19 13:03:24,525 | INFO     | executing command: cat /etc/os-release
[2026-04-19 15:04:24] 2026-04-19 13:03:24,543 | INFO     | cat /etc/os-release:
[2026-04-19 15:04:24] NAME="CentOS Linux"
[2026-04-19 15:04:24] VERSION="7 (Core)"
[2026-04-19 15:04:24] ID="centos"
[2026-04-19 15:04:24] ID_LIKE="rhel fedora"
[2026-04-19 15:04:24] VERSION_ID="7"
[2026-04-19 15:04:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 15:04:24] ANSI_COLOR="0;31"
[2026-04-19 15:04:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 15:04:24] HOME_URL="https://www.centos.org/"
[2026-04-19 15:04:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 15:04:24] 
[2026-04-19 15:04:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 15:04:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 15:04:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 15:04:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 15:04:24] 
[2026-04-19 15:04:24] 2026-04-19 13:03:24,544 | INFO     | **************************************
[2026-04-19 15:04:24] 2026-04-19 13:03:25,047 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-19 15:04:24] 2026-04-19 13:03:25,066 | INFO     | sufficient remaining disk space (497083744256 B)
[2026-04-19 15:04:24] 2026-04-19 13:03:25,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 15:04:24] 2026-04-19 13:03:25,066 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 15:04:24] 2026-04-19 13:03:25,067 | INFO     | update_server=False
[2026-04-19 15:04:24] 2026-04-19 13:03:25,067 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 15:04:24] 2026-04-19 13:03:25,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 15:04:24] 2026-04-19 13:03:25,747 | INFO     | all job control threads have been joined
[2026-04-19 15:04:24] 2026-04-19 13:03:25,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 15:04:24] 2026-04-19 13:03:25,817 | INFO     | aborting loop
[2026-04-19 15:04:24] 2026-04-19 13:03:25,824 | INFO     | all data control threads have been joined
[2026-04-19 15:04:24] 2026-04-19 13:03:26,072 | INFO     | [job] retrieve thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,073 | INFO     | [job] queue monitor thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,128 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 15:04:24] 2026-04-19 13:03:26,520 | INFO     | all payload control threads have been joined
[2026-04-19 15:04:24] 2026-04-19 13:03:26,736 | INFO     | [data] copytool_in thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,753 | INFO     | [job] control thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,822 | INFO     | [job] job monitor thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,830 | INFO     | [data] control thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:26,878 | INFO     | [payload] validate_post thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,123 | INFO     | [job] validate thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,377 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,525 | INFO     | [payload] control thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,548 | INFO     | [payload] failed_post thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,567 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:27,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 15:04:24] 2026-04-19 13:03:28,370 | INFO     | [data] copytool_out thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:31,624 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:35,607 | INFO     | job.realtimelogging is not enabled
[2026-04-19 15:04:24] 2026-04-19 13:03:36,613 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 15:04:24] 2026-04-19 13:03:54,945 | INFO     | PID=6670 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-19 15:04:24] 2026-04-19 13:03:54,945 | INFO     | .. there are 2 such processes running
[2026-04-19 15:04:24] 2026-04-19 13:03:54,946 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 15:04:24] 2026-04-19 13:03:54,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 15:04:24] 2026-04-19 13:03:54,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 15:04:24] 2026-04-19 13:04:17,643 | INFO     | [monitor] cgroup control has ended
[2026-04-19 15:04:24] 2026-04-19 13:04:19,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658714335040)>', '<ExcThread(monitor, started 140657830131456)>']
[2026-04-19 15:04:24] 2026-04-19 13:04:20,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 15:04:24] 2026-04-19 13:04:20,073 | INFO     | [monitor] control thread has ended
[2026-04-19 15:04:24] 2026-04-19 13:04:24,166 | INFO     | all workflow threads have been joined
[2026-04-19 15:04:24] 2026-04-19 13:04:24,166 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 15:04:24] 2026-04-19 13:04:24,166 | INFO     | traces error code: 0
[2026-04-19 15:04:24] 2026-04-19 13:04:24,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 15:04:24] 2026-04-19 13:04:24,316 [wrapper] ==== pilot stdout END ====
[2026-04-19 15:04:24] 2026-04-19 13:04:24,323 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 15:04:24] 2026-04-19 13:04:24,329 [wrapper] pilotpid: 6670
[2026-04-19 15:04:24] 2026-04-19 13:04:24,337 [wrapper] Pilot exit status: 0
[2026-04-19 15:04:24] 2026-04-19 13:04:24,356 [wrapper] pandaids: 7087722675
[2026-04-19 15:04:24] 2026-04-19 13:04:24,409 [wrapper] cleanup supervisor_pilot 18462 6671
[2026-04-19 15:04:24] 2026-04-19 13:04:24,413 [wrapper] Test setup, not cleaning
[2026-04-19 15:04:24] 2026-04-19 13:04:24,426 [wrapper] apfmon messages muted
[2026-04-19 15:04:24] 2026-04-19 13:04:24,432 [wrapper] ==== wrapper stdout END ====
[2026-04-19 15:04:24] 2026-04-19 13:04:24,438 [wrapper] ==== wrapper stderr END ====
[2026-04-19 15:04:24]  *** Error codes and diagnostics ***
[2026-04-19 15:04:24]     "exeErrorCode": 0,
[2026-04-19 15:04:24]     "pilotErrorCode": 0,
[2026-04-19 15:04:24]  *** Listing of results directory ***
[2026-04-19 15:04:24] total 417048
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc    644190 Apr 12 04:09 pilot3.tar.gz
[2026-04-19 15:04:24] -rwx------. 1 boinc boinc     36322 Apr 12 04:12 runpilot2-wrapper.sh
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc      5094 Apr 12 04:18 queuedata.json
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc       100 Apr 19 12:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 15:04:24] -rwxr-xr-x. 1 boinc boinc      7986 Apr 19 12:18 run_atlas
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc       105 Apr 19 12:18 job.xml
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc      6305 Apr 19 12:18 init_data.xml
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc 226271741 Apr 19 12:18 EVNT.49263198._001226.pool.root.1
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc     15665 Apr 19 12:18 start_atlas.sh
[2026-04-19 15:04:24] drwxrwx--x. 2 boinc boinc        68 Apr 19 12:18 shared
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc    656938 Apr 19 12:18 input.tar.gz
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc         0 Apr 19 12:18 boinc_lockfile
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc      2576 Apr 19 12:18 pandaJob.out
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc   1512404 Apr 19 12:23 agis_ddmendpoints.agis.ALL.json
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc       415 Apr 19 12:24 workernode_map.json
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc    997326 Apr 19 12:25 agis_schedconf.cvmfs.json
[2026-04-19 15:04:24] drwx------. 5 boinc boinc      4096 Apr 19 12:25 pilot3
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc 194257561 Apr 19 15:02 HITS.49263200._048557.pool.root.1
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc       487 Apr 19 15:02 boinc_task_state.xml
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc      1015 Apr 19 15:03 memory_monitor_summary.json
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc    341496 Apr 19 15:03 log.49263200._048557.job.log.tgz.1
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc      6340 Apr 19 15:03 heartbeat_new.json
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc      6231 Apr 19 15:03 heartbeat.json
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc        28 Apr 19 15:03 wrapper_checkpoint.txt
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc      8192 Apr 19 15:03 boinc_mmap_file
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc        95 Apr 19 15:03 pilot_heartbeat.json
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc      4950 Apr 19 15:04 pilotlog.txt
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc    896564 Apr 19 15:04 log.49263200._048557.job.log.1
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc       357 Apr 19 15:04 output.list
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc       410 Apr 19 15:04 runtime_log
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc   1259520 Apr 19 15:04 result.tar.gz
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc      8437 Apr 19 15:04 runtime_log.err
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc       652 Apr 19 15:04 ff9a4f171bcd.diag
[2026-04-19 15:04:24] -rw-r--r--. 1 boinc boinc     20829 Apr 19 15:04 stderr.txt
[2026-04-19 15:04:24] HITS file was successfully produced:
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc 194257561 Apr 19 15:02 shared/HITS.pool.root.1
[2026-04-19 15:04:24]  *** Contents of shared directory: ***
[2026-04-19 15:04:24] total 412572
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc 226271741 Apr 19 12:18 ATLAS.root_0
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc     15665 Apr 19 12:18 start_atlas.sh
[2026-04-19 15:04:24] -rw-r--r--. 2 boinc boinc    656938 Apr 19 12:18 input.tar.gz
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc 194257561 Apr 19 15:02 HITS.pool.root.1
[2026-04-19 15:04:24] -rw-------. 1 boinc boinc   1259520 Apr 19 15:04 result.tar.gz
15:04:26 (2518): run_atlas exited; CPU time 57162.493075
15:04:26 (2518): called boinc_finish(0)

</stderr_txt>
]]>

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