Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:00:02 (871430): wrapper (7.7.26015): starting
06:00:02 (871430): wrapper: running run_atlas (--nthreads 4)
[2026-04-19 06:00:02] Arguments: --nthreads 4
[2026-04-19 06:00:02] Threads: 4
[2026-04-19 06:00:02] Checking for CVMFS
[2026-04-19 06:00:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 06:00:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 06:00:02] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 06:00:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 06:00:02] 2.9.2.0 681017 1221 83384 158607 1 50 28389387 36864000 0 130560 0 716420 99.986 45149 14773 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-19 06:00:02] CVMFS is ok
[2026-04-19 06:00:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 06:00:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 06:00:02] Further information can be found at the LHC@home message board.
[2026-04-19 06:00:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 06:00:02] Checking for apptainer binary...
[2026-04-19 06:00:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 06:00:02] Running /usr/bin/apptainer --version
[2026-04-19 06:00:02] apptainer version 1.4.1-1.1
[2026-04-19 06:00:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 06:00:03] cosA131b
[2026-04-19 06:00:03] apptainer works
[2026-04-19 06:00:03] Set ATHENA_PROC_NUMBER=4
[2026-04-19 06:00:03] Set ATHENA_CORE_NUMBER=4
[2026-04-19 06:00:03] Starting ATLAS job with PandaID=7101062712
[2026-04-19 06:00:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 08:05:31]  *** The last 200 lines of the pilot log: ***
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | job 7101062712 has completed (purged errors)
[2026-04-19 08:05:31] 2026-04-19 06:04:36,947 | INFO     | overall cleanup function is called
[2026-04-19 08:05:31] 2026-04-19 06:04:37,954 | INFO     | --- collectZombieJob: --- 10, [880054]
[2026-04-19 08:05:31] 2026-04-19 06:04:37,955 | INFO     | zombie collector waiting for pid 880054
[2026-04-19 08:05:31] 2026-04-19 06:04:37,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 08:05:31] 2026-04-19 06:04:37,955 | INFO     | collected zombie processes
[2026-04-19 08:05:31] 2026-04-19 06:04:37,955 | INFO     | will attempt to kill all subprocesses of pid=880054
[2026-04-19 08:05:31] 2026-04-19 06:04:37,997 | INFO     | process IDs to be killed: [880054] (in reverse order)
[2026-04-19 08:05:31] 2026-04-19 06:04:38,030 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 08:05:31] 2026-04-19 06:04:38,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 08:05:31] 2026-04-19 06:04:38,032 | INFO     | did not find any defunct processes belonging to 880054
[2026-04-19 08:05:31] 2026-04-19 06:04:38,033 | INFO     | did not find any defunct processes belonging to 880054
[2026-04-19 08:05:31] 2026-04-19 06:04:38,033 | INFO     | Ready for new job
[2026-04-19 08:05:31] 2026-04-19 06:04:38,034 | INFO     | **************************************
[2026-04-19 08:05:31] 2026-04-19 06:04:38,034 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 08:05:31] 2026-04-19 06:04:38,034 | INFO     | **************************************
[2026-04-19 08:05:31] 2026-04-19 06:04:38,034 | INFO     | 
[2026-04-19 08:05:31] 2026-04-19 06:04:38,035 | INFO     | architecture information:
[2026-04-19 08:05:31] 2026-04-19 06:04:38,035 | INFO     | executing command: cat /etc/os-release
[2026-04-19 08:05:31] 2026-04-19 06:04:38,049 | INFO     | cat /etc/os-release:
[2026-04-19 08:05:31] NAME="CentOS Linux"
[2026-04-19 08:05:31] VERSION="7 (Core)"
[2026-04-19 08:05:31] ID="centos"
[2026-04-19 08:05:31] ID_LIKE="rhel fedora"
[2026-04-19 08:05:31] VERSION_ID="7"
[2026-04-19 08:05:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 08:05:31] ANSI_COLOR="0;31"
[2026-04-19 08:05:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 08:05:31] HOME_URL="https://www.centos.org/"
[2026-04-19 08:05:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 08:05:31] 
[2026-04-19 08:05:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 08:05:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 08:05:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 08:05:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 08:05:31] 
[2026-04-19 08:05:31] 2026-04-19 06:04:38,049 | INFO     | **************************************
[2026-04-19 08:05:31] 2026-04-19 06:04:38,553 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | INFO     | sufficient remaining disk space (316675194880 B)
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | INFO     | update_server=False
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 08:05:31] 2026-04-19 06:04:38,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 08:05:31] 2026-04-19 06:04:38,573 | INFO     | aborting loop
[2026-04-19 08:05:31] 2026-04-19 06:04:38,611 | INFO     | all data control threads have been joined
[2026-04-19 08:05:31] 2026-04-19 06:04:39,193 | INFO     | all job control threads have been joined
[2026-04-19 08:05:31] 2026-04-19 06:04:39,475 | INFO     | all payload control threads have been joined
[2026-04-19 08:05:31] 2026-04-19 06:04:39,578 | INFO     | [job] queue monitor thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:39,578 | INFO     | [job] retrieve thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:39,578 | INFO     | [job] job monitor thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:39,616 | INFO     | [data] control thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,032 | INFO     | [job] validate thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,174 | INFO     | [payload] failed_post thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,179 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,199 | INFO     | [job] control thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,281 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,384 | INFO     | [data] copytool_in thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,466 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,481 | INFO     | [payload] control thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:40,576 | INFO     | [data] copytool_out thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:41,003 | INFO     | [payload] validate_post thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:41,749 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 08:05:31] 2026-04-19 06:04:45,756 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:04:49,504 | INFO     | job.realtimelogging is not enabled
[2026-04-19 08:05:31] 2026-04-19 06:04:50,509 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 08:05:31] 2026-04-19 06:05:08,873 | INFO     | PID=875546 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-19 08:05:31] 2026-04-19 06:05:08,873 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 08:05:31] 2026-04-19 06:05:08,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 08:05:31] 2026-04-19 06:05:08,873 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 08:05:31] 2026-04-19 06:05:26,134 | INFO     | [monitor] cgroup control has ended
[2026-04-19 08:05:31] 2026-04-19 06:05:26,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024496600896)>', '<ExcThread(monitor, started 140023676512000)>']
[2026-04-19 08:05:31] 2026-04-19 06:05:26,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 08:05:31] 2026-04-19 06:05:26,970 | INFO     | [monitor] control thread has ended
[2026-04-19 08:05:31] 2026-04-19 06:05:31,196 | INFO     | all workflow threads have been joined
[2026-04-19 08:05:31] 2026-04-19 06:05:31,196 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 08:05:31] 2026-04-19 06:05:31,196 | INFO     | traces error code: 0
[2026-04-19 08:05:31] 2026-04-19 06:05:31,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 08:05:31] 2026-04-19 06:05:31,318 [wrapper] ==== pilot stdout END ====
[2026-04-19 08:05:31] 2026-04-19 06:05:31,322 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 08:05:31] 2026-04-19 06:05:31,326 [wrapper] pilotpid: 875546
[2026-04-19 08:05:31] 2026-04-19 06:05:31,330 [wrapper] Pilot exit status: 0
[2026-04-19 08:05:31] 2026-04-19 06:05:31,342 [wrapper] pandaids: 7101062712
[2026-04-19 08:05:31] 2026-04-19 06:05:31,366 [wrapper] cleanup supervisor_pilot  885984 875547
[2026-04-19 08:05:31] 2026-04-19 06:05:31,370 [wrapper] Test setup, not cleaning
[2026-04-19 08:05:31] 2026-04-19 06:05:31,374 [wrapper] apfmon messages muted
[2026-04-19 08:05:31] 2026-04-19 06:05:31,378 [wrapper] ==== wrapper stdout END ====
[2026-04-19 08:05:31] 2026-04-19 06:05:31,382 [wrapper] ==== wrapper stderr END ====
[2026-04-19 08:05:31]  *** Error codes and diagnostics ***
[2026-04-19 08:05:31]     "exeErrorCode": 0,
[2026-04-19 08:05:31]     "pilotErrorCode": 0,
[2026-04-19 08:05:31]  *** Listing of results directory ***
[2026-04-19 08:05:31] total 2471584
[2026-04-19 08:05:31] -rwx------ 1 boinc boinc      36322 Apr 18 16:20 runpilot2-wrapper.sh
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc     644190 Apr 18 16:36 pilot3.tar.gz
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc       5094 Apr 18 16:39 queuedata.json
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc        100 Apr 19 06:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 08:05:31] -rwxr-xr-x 1 boinc boinc       7986 Apr 19 06:00 run_atlas
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc        105 Apr 19 06:00 job.xml
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc 2250858422 Apr 19 06:00 EVNT.49820242._000006.pool.root.1
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc     656905 Apr 19 06:00 input.tar.gz
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc      15665 Apr 19 06:00 start_atlas.sh
[2026-04-19 08:05:31] drwxrwx--x 2 boinc boinc       4096 Apr 19 06:00 shared
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc          0 Apr 19 06:00 boinc_setup_complete
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc       6294 Apr 19 06:00 init_data.xml
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc          0 Apr 19 06:00 boinc_lockfile
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc       2550 Apr 19 06:00 pandaJob.out
[2026-04-19 08:05:31] -rw------- 1 boinc boinc     997681 Apr 19 06:00 agis_schedconf.cvmfs.json
[2026-04-19 08:05:31] -rw------- 1 boinc boinc    1512404 Apr 19 06:00 agis_ddmendpoints.agis.ALL.json
[2026-04-19 08:05:31] -rw------- 1 boinc boinc        429 Apr 19 06:00 workernode_map.json
[2026-04-19 08:05:31] drwx------ 5 boinc boinc       4096 Apr 19 06:00 pilot3
[2026-04-19 08:05:31] -rw------- 1 boinc boinc  273750874 Apr 19 08:04 HITS.49820244._001363.pool.root.1
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc        488 Apr 19 08:04 boinc_task_state.xml
[2026-04-19 08:05:31] -rw------- 1 boinc boinc       1017 Apr 19 08:04 memory_monitor_summary.json
[2026-04-19 08:05:31] -rw------- 1 boinc boinc     410468 Apr 19 08:04 log.49820244._001363.job.log.tgz.1
[2026-04-19 08:05:31] -rw------- 1 boinc boinc       6326 Apr 19 08:04 heartbeat_new.json
[2026-04-19 08:05:31] -rw------- 1 boinc boinc       6217 Apr 19 08:04 heartbeat.json
[2026-04-19 08:05:31] -rw------- 1 boinc boinc         95 Apr 19 08:05 pilot_heartbeat.json
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc         27 Apr 19 08:05 wrapper_checkpoint.txt
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc       8192 Apr 19 08:05 boinc_mmap_file
[2026-04-19 08:05:31] -rw------- 1 boinc boinc       4818 Apr 19 08:05 pilotlog.txt
[2026-04-19 08:05:31] -rw------- 1 boinc boinc     711241 Apr 19 08:05 log.49820244._001363.job.log.1
[2026-04-19 08:05:31] -rw------- 1 boinc boinc        357 Apr 19 08:05 output.list
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc        410 Apr 19 08:05 runtime_log
[2026-04-19 08:05:31] -rw------- 1 boinc boinc    1136640 Apr 19 08:05 result.tar.gz
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc       8528 Apr 19 08:05 runtime_log.err
[2026-04-19 08:05:31] -rw------- 1 boinc boinc        660 Apr 19 08:05 9317de062466.diag
[2026-04-19 08:05:31] -rw-r--r-- 1 boinc boinc      12315 Apr 19 08:05 stderr.txt
[2026-04-19 08:05:31] HITS file was successfully produced:
[2026-04-19 08:05:31] -rw------- 1 boinc boinc 273750874 Apr 19 08:04 shared/HITS.pool.root.1
[2026-04-19 08:05:31]  *** Contents of shared directory: ***
[2026-04-19 08:05:31] total 2467220
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc 2250858422 Apr 19 06:00 ATLAS.root_0
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc     656905 Apr 19 06:00 input.tar.gz
[2026-04-19 08:05:31] -rw-r--r-- 2 boinc boinc      15665 Apr 19 06:00 start_atlas.sh
[2026-04-19 08:05:31] -rw------- 1 boinc boinc  273750874 Apr 19 08:04 HITS.pool.root.1
[2026-04-19 08:05:31] -rw------- 1 boinc boinc    1136640 Apr 19 08:05 result.tar.gz
08:05:33 (871430): run_atlas exited; CPU time 28288.575622
08:05:33 (871430): called boinc_finish(0)

</stderr_txt>
]]>

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