Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:47 (882902): wrapper (7.7.26015): starting
16:21:47 (882902): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 16:21:47] Arguments: --nthreads 8
[2026-04-18 16:21:47] Threads: 8
[2026-04-18 16:21:47] Checking for CVMFS
[2026-04-18 16:21:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 16:21:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 16:21:49] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 16:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 16:21:52] 2.13.3.0 12442 26173 325712 158596 0 46 24859612 32935937 31726 16776704 0 40119173 99.367 77516857 14307 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-18 16:21:52] CVMFS is ok
[2026-04-18 16:21:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 16:21:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 16:21:52] Further information can be found at the LHC@home message board.
[2026-04-18 16:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 16:21:52] Checking for apptainer binary...
[2026-04-18 16:21:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 16:21:52] Running /usr/bin/apptainer --version
[2026-04-18 16:21:52] apptainer version 1.4.5-3.el9
[2026-04-18 16:21:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 16:21:53] c6-12-25-4.aglt2.org
[2026-04-18 16:21:53] apptainer works
[2026-04-18 16:21:53] Set ATHENA_PROC_NUMBER=8
[2026-04-18 16:21:53] Set ATHENA_CORE_NUMBER=8
[2026-04-18 16:21:53] Starting ATLAS job with PandaID=7101003295
[2026-04-18 16:21:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 13:20:26]  *** The last 200 lines of the pilot log: ***
[2026-04-19 13:20:26] 2026-04-19 17:19:46,257 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-19 13:20:26] 2026-04-19 17:19:46,257 | INFO     | log transfer has been attempted: DONE
[2026-04-19 13:20:26] 2026-04-19 17:19:46,258 | INFO     | job 7101003295 has finished - writing final server update
[2026-04-19 13:20:26] 2026-04-19 17:19:46,258 | INFO     | total number of processed events: 400 (read)
[2026-04-19 13:20:26] 2026-04-19 17:19:46,327 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-7101003295/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 13:20:26] 2026-04-19 17:19:46,328 | INFO     | extracted standard info from prmon json
[2026-04-19 13:20:26] 2026-04-19 17:19:46,328 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 13:20:26] 2026-04-19 17:19:46,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 13:20:26] 2026-04-19 17:19:46,330 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 13:20:26] 2026-04-19 17:19:46,380 | INFO     | fitting pss+swap vs Time
[2026-04-19 13:20:26] 2026-04-19 17:19:46,393 | INFO     | sum of square deviations: 579836645069.0615
[2026-04-19 13:20:26] 2026-04-19 17:19:46,539 | INFO     | sum of deviations: 970417903929.7705
[2026-04-19 13:20:26] 2026-04-19 17:19:46,539 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:46,540 | INFO     | mean y: 2546190.477272727
[2026-04-19 13:20:26] 2026-04-19 17:19:46,540 | INFO     | intersect: 2546190.477272727
[2026-04-19 13:20:26] 2026-04-19 17:19:46,544 | INFO     | chi2: 6.849761241119083
[2026-04-19 13:20:26] 2026-04-19 17:19:46,548 | INFO     | sum of square deviations: 572805974160.4023
[2026-04-19 13:20:26] 2026-04-19 17:19:46,690 | INFO     | sum of deviations: 1222961670569.6494
[2026-04-19 13:20:26] 2026-04-19 17:19:46,690 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:46,690 | INFO     | mean y: 2551658.980440098
[2026-04-19 13:20:26] 2026-04-19 17:19:46,691 | INFO     | intersect: 2551658.980440098
[2026-04-19 13:20:26] 2026-04-19 17:19:46,695 | INFO     | chi2: 4.445949609863869
[2026-04-19 13:20:26] 2026-04-19 17:19:46,696 | INFO     | current chi2=4.445949609863869 (change=35.093363792377815 %)
[2026-04-19 13:20:26] 2026-04-19 17:19:46,700 | INFO     | sum of square deviations: 565832224276.4653
[2026-04-19 13:20:26] 2026-04-19 17:19:46,888 | INFO     | sum of deviations: 1213719601508.494
[2026-04-19 13:20:26] 2026-04-19 17:19:46,888 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:46,889 | INFO     | mean y: 2551456.8870703764
[2026-04-19 13:20:26] 2026-04-19 17:19:46,889 | INFO     | intersect: 2551456.8870703764
[2026-04-19 13:20:26] 2026-04-19 17:19:46,893 | INFO     | chi2: 4.446015810873198
[2026-04-19 13:20:26] 2026-04-19 17:19:46,893 | INFO     | current chi2=4.446015810873198 (change=-0.0014890184356062448 %)
[2026-04-19 13:20:26] 2026-04-19 17:19:46,893 | INFO     | right removable region: 1221
[2026-04-19 13:20:26] 2026-04-19 17:19:46,897 | INFO     | sum of square deviations: 572805212395.3068
[2026-04-19 13:20:26] 2026-04-19 17:19:47,002 | INFO     | sum of deviations: 593449367413.7673
[2026-04-19 13:20:26] 2026-04-19 17:19:47,002 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,003 | INFO     | mean y: 2554362.9413202936
[2026-04-19 13:20:26] 2026-04-19 17:19:47,003 | INFO     | intersect: 2554362.9413202936
[2026-04-19 13:20:26] 2026-04-19 17:19:47,006 | INFO     | chi2: 3.625995002753809
[2026-04-19 13:20:26] 2026-04-19 17:19:47,007 | INFO     | current chi2=3.625995002753809 (change=47.063921279664775 %)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,010 | INFO     | sum of square deviations: 565830850315.0271
[2026-04-19 13:20:26] 2026-04-19 17:19:47,137 | INFO     | sum of deviations: 399580433248.2014
[2026-04-19 13:20:26] 2026-04-19 17:19:47,137 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,138 | INFO     | mean y: 2558599.059738134
[2026-04-19 13:20:26] 2026-04-19 17:19:47,138 | INFO     | intersect: 2558599.059738134
[2026-04-19 13:20:26] 2026-04-19 17:19:47,142 | INFO     | chi2: 2.756986867019469
[2026-04-19 13:20:26] 2026-04-19 17:19:47,143 | INFO     | current chi2=2.756986867019469 (change=23.966059938702628 %)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,143 | INFO     | left removable region: 10
[2026-04-19 13:20:26] 2026-04-19 17:19:47,147 | INFO     | sum of square deviations: 550688446767.1957
[2026-04-19 13:20:26] 2026-04-19 17:19:47,296 | INFO     | sum of deviations: 644395621204.6931
[2026-04-19 13:20:26] 2026-04-19 17:19:47,296 | INFO     | mean x (centered): 0.0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,297 | INFO     | mean y: 2563985.651527663
[2026-04-19 13:20:26] 2026-04-19 17:19:47,297 | INFO     | intersect: 2563985.651527663
[2026-04-19 13:20:26] 2026-04-19 17:19:47,302 | INFO     | chi2: 0.32566493465452456
[2026-04-19 13:20:26] 2026-04-19 17:19:47,303 | INFO     | current memory leak: 1.17 B/s (using 1211 data points, chi2=0.33)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,305 | INFO     | could have reported an average CPU frequency of 1000 MHz (45 samples)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,306 | INFO     | ..............................
[2026-04-19 13:20:26] 2026-04-19 17:19:47,306 | INFO     | . Timing measurements:
[2026-04-19 13:20:26] 2026-04-19 17:19:47,306 | INFO     | . get job = 1 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,307 | INFO     | . initial setup = 57 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,307 | INFO     | . payload setup = 83 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,307 | INFO     | . stage-in = 2 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,307 | INFO     | . payload execution = 75176 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,307 | INFO     | . stage-out = 11 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,308 | INFO     | . log creation = 1 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,308 | INFO     | ..............................
[2026-04-19 13:20:26] 2026-04-19 17:19:47,718 | INFO     | 
[2026-04-19 13:20:26] 2026-04-19 17:19:47,719 | INFO     | job summary report
[2026-04-19 13:20:26] 2026-04-19 17:19:47,719 | INFO     | --------------------------------------------------
[2026-04-19 13:20:26] 2026-04-19 17:19:47,719 | INFO     | PanDA job id: 7101003295
[2026-04-19 13:20:26] 2026-04-19 17:19:47,719 | INFO     | task id: 49820244
[2026-04-19 13:20:26] 2026-04-19 17:19:47,719 | INFO     | errors: (none)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,720 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 13:20:26] 2026-04-19 17:19:47,720 | INFO     | pilot state: finished 
[2026-04-19 13:20:26] 2026-04-19 17:19:47,720 | INFO     | transexitcode: 0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,720 | INFO     | exeerrorcode: 0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,720 | INFO     | exeerrordiag: 
[2026-04-19 13:20:26] 2026-04-19 17:19:47,721 | INFO     | exitcode: 0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,721 | INFO     | exitmsg: OK
[2026-04-19 13:20:26] 2026-04-19 17:19:47,721 | INFO     | cpuconsumptiontime: 199261 s
[2026-04-19 13:20:26] 2026-04-19 17:19:47,721 | INFO     | nevents: 400
[2026-04-19 13:20:26] 2026-04-19 17:19:47,721 | INFO     | neventsw: 0
[2026-04-19 13:20:26] 2026-04-19 17:19:47,722 | INFO     | pid: 898247
[2026-04-19 13:20:26] 2026-04-19 17:19:47,722 | INFO     | pgrp: 898247
[2026-04-19 13:20:26] 2026-04-19 17:19:47,722 | INFO     | corecount: 8
[2026-04-19 13:20:26] 2026-04-19 17:19:47,722 | INFO     | event service: False
[2026-04-19 13:20:26] 2026-04-19 17:19:47,723 | INFO     | sizes: {0: 2280943, 1: 2281544, 2: 2281628, 4: 2281656, 5: 2281684, 7: 2281684, 10: 2281684, 12: 2283669, 13: 2283697, 25: 2283753, 75266: 2338594, 75267: 2338873,
[2026-04-19 13:20:26] 2026-04-19 17:19:47,723 | INFO     | --------------------------------------------------
[2026-04-19 13:20:26] 2026-04-19 17:19:47,723 | INFO     | 
[2026-04-19 13:20:26] 2026-04-19 17:19:47,723 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-04-19 13:20:26] 2026-04-19 17:19:47,993 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,994 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,994 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,995 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,998 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,998 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 13:20:26] 2026-04-19 17:19:47,999 | INFO     | job 7101003295 has completed (purged errors)
[2026-04-19 13:20:26] 2026-04-19 17:19:47,999 | INFO     | overall cleanup function is called
[2026-04-19 13:20:26] 2026-04-19 17:19:48,405 | INFO     | PID=889430 has CPU usage=28.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-19 13:20:26] 2026-04-19 17:19:48,405 | INFO     | .. there are 26 such processes running
[2026-04-19 13:20:26] 2026-04-19 17:19:49,073 | INFO     | --- collectZombieJob: --- 10, [898247]
[2026-04-19 13:20:26] 2026-04-19 17:19:49,073 | INFO     | zombie collector waiting for pid 898247
[2026-04-19 13:20:26] 2026-04-19 17:19:49,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 13:20:26] 2026-04-19 17:19:49,074 | INFO     | collected zombie processes
[2026-04-19 13:20:26] 2026-04-19 17:19:49,074 | INFO     | will attempt to kill all subprocesses of pid=898247
[2026-04-19 13:20:26] 2026-04-19 17:19:50,791 | INFO     | process IDs to be killed: [898247] (in reverse order)
[2026-04-19 13:20:26] 2026-04-19 17:19:51,170 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 13:20:26] 2026-04-19 17:19:51,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 13:20:26] 2026-04-19 17:19:51,335 | INFO     | did not find any defunct processes belonging to 898247
[2026-04-19 13:20:26] 2026-04-19 17:19:51,545 | INFO     | did not find any defunct processes belonging to 898247
[2026-04-19 13:20:26] 2026-04-19 17:19:51,567 | INFO     | Ready for new job
[2026-04-19 13:20:26] 2026-04-19 17:19:51,584 | INFO     | **************************************
[2026-04-19 13:20:26] 2026-04-19 17:19:51,584 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 13:20:26] 2026-04-19 17:19:51,584 | INFO     | **************************************
[2026-04-19 13:20:26] 2026-04-19 17:19:51,597 | INFO     | 
[2026-04-19 13:20:26] 2026-04-19 17:19:51,635 | INFO     | architecture information:
[2026-04-19 13:20:26] 2026-04-19 17:19:51,644 | INFO     | executing command: cat /etc/os-release
[2026-04-19 13:20:26] 2026-04-19 17:19:51,704 | INFO     | cat /etc/os-release:
[2026-04-19 13:20:26] NAME="CentOS Linux"
[2026-04-19 13:20:26] VERSION="7 (Core)"
[2026-04-19 13:20:26] ID="centos"
[2026-04-19 13:20:26] ID_LIKE="rhel fedora"
[2026-04-19 13:20:26] VERSION_ID="7"
[2026-04-19 13:20:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 13:20:26] ANSI_COLOR="0;31"
[2026-04-19 13:20:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 13:20:26] HOME_URL="https://www.centos.org/"
[2026-04-19 13:20:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 13:20:26] 
[2026-04-19 13:20:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 13:20:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 13:20:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 13:20:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 13:20:26] 
[2026-04-19 13:20:26] 2026-04-19 17:19:51,705 | INFO     | **************************************
[2026-04-19 13:20:26] 2026-04-19 17:19:52,209 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-04-19 13:20:26] 2026-04-19 17:19:52,462 | INFO     | sufficient remaining disk space (87853891584 B)
[2026-04-19 13:20:26] 2026-04-19 17:19:52,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 13:20:26] 2026-04-19 17:19:52,464 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 13:20:26] 2026-04-19 17:19:52,464 | INFO     | update_server=False
[2026-04-19 13:20:26] 2026-04-19 17:19:52,464 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 13:20:26] 2026-04-19 17:19:52,470 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 13:20:26] 2026-04-19 17:19:52,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 13:20:26] 2026-04-19 17:19:52,474 | INFO     | aborting loop
[2026-04-19 13:20:26] 2026-04-19 17:19:52,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 13:20:26] 2026-04-19 17:19:52,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 13:20:26] 2026-04-19 17:19:52,980 | INFO     | all data control threads have been joined
[2026-04-19 13:20:26] 2026-04-19 17:19:53,475 | INFO     | [job] retrieve thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:53,485 | INFO     | [job] job monitor thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:53,495 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:53,742 | INFO     | [job] queue monitor thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:53,903 | INFO     | all payload control threads have been joined
[2026-04-19 13:20:26] 2026-04-19 17:19:53,986 | INFO     | [data] control thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,025 | INFO     | [data] copytool_in thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,030 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,031 | INFO     | [job] validate thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,035 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,105 | INFO     | all job control threads have been joined
[2026-04-19 13:20:26] 2026-04-19 17:19:54,282 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,311 | INFO     | [payload] validate_post thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,758 | INFO     | [payload] failed_post thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,880 | INFO     | [data] copytool_out thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:54,909 | INFO     | [payload] control thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:55,111 | INFO     | [job] control thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:19:56,480 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 13:20:26] 2026-04-19 17:20:03,426 | INFO     | [monitor] cgroup control has ended
[2026-04-19 13:20:26] 2026-04-19 17:20:03,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538513643328)>', '<ExcThread(monitor, started 140538133063424)>']
[2026-04-19 13:20:26] 2026-04-19 17:20:09,027 | INFO     | all workflow threads have been joined
[2026-04-19 13:20:26] 2026-04-19 17:20:09,027 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 13:20:26] 2026-04-19 17:20:09,028 | INFO     | traces error code: 0
[2026-04-19 13:20:26] 2026-04-19 17:20:09,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 13:20:26] 2026-04-19 17:20:24,874 | INFO     | PID=889430 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-19 13:20:26] 2026-04-19 17:20:24,875 | INFO     | .. there are 26 such processes running
[2026-04-19 13:20:26] 2026-04-19 17:20:24,875 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 13:20:26] 2026-04-19 17:20:24,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 13:20:26] 2026-04-19 17:20:24,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 13:20:26] 2026-04-19 17:20:24,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 13:20:26] 2026-04-19 17:20:24,876 | INFO     | [monitor] control thread has ended
[2026-04-19 13:20:26] 2026-04-19 17:20:25,347 [wrapper] ==== pilot stdout END ====
[2026-04-19 13:20:26] 2026-04-19 17:20:25,437 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 13:20:26] 2026-04-19 17:20:25,472 [wrapper] pilotpid: 889430
[2026-04-19 13:20:26] 2026-04-19 17:20:25,515 [wrapper] Pilot exit status: 0
[2026-04-19 13:20:26] 2026-04-19 17:20:25,591 [wrapper] pandaids: 7101003295
[2026-04-19 13:20:26] 2026-04-19 17:20:25,809 [wrapper] cleanup supervisor_pilot 3913376 889431
[2026-04-19 13:20:26] 2026-04-19 17:20:25,819 [wrapper] Test setup, not cleaning
[2026-04-19 13:20:26] 2026-04-19 17:20:25,843 [wrapper] apfmon messages muted
[2026-04-19 13:20:26] 2026-04-19 17:20:25,876 [wrapper] ==== wrapper stdout END ====
[2026-04-19 13:20:26] 2026-04-19 17:20:25,938 [wrapper] ==== wrapper stderr END ====
[2026-04-19 13:20:26]  *** Error codes and diagnostics ***
[2026-04-19 13:20:26]     "exeErrorCode": 0,
[2026-04-19 13:20:26]     "pilotErrorCode": 0,
[2026-04-19 13:20:26]  *** Listing of results directory ***
[2026-04-19 13:20:27] total 2455800
[2026-04-19 13:20:27] -rwx------. 1 boincer umatlas      36322 Apr 18 08:36 runpilot2-wrapper.sh
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas     644190 Apr 18 08:50 pilot3.tar.gz
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas       5094 Apr 18 08:54 queuedata.json
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas        100 Apr 18 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 13:20:27] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 18 16:21 run_atlas
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas        105 Apr 18 16:21 job.xml
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas 2232826562 Apr 18 16:21 EVNT.49820242._000010.pool.root.1
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas      15665 Apr 18 16:21 start_atlas.sh
[2026-04-19 13:20:27] drwxrwx--x. 2 boincer umatlas       4096 Apr 18 16:21 shared
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas     656909 Apr 18 16:21 input.tar.gz
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas          0 Apr 18 16:21 boinc_lockfile
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas       2548 Apr 18 16:21 pandaJob.out
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas         57 Apr 18 16:21 setup.sh.local
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas     997684 Apr 18 16:23 agis_schedconf.cvmfs.json
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas        443 Apr 18 16:24 workernode_map.json
[2026-04-19 13:20:27] drwx------. 5 boincer umatlas       4096 Apr 18 16:24 pilot3
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas       6776 Apr 19 13:09 init_data.xml
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas  267446197 Apr 19 13:16 HITS.49820244._000979.pool.root.1
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas        490 Apr 19 13:16 boinc_task_state.xml
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas       1057 Apr 19 13:19 memory_monitor_summary.json
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas         95 Apr 19 13:19 pilot_heartbeat.json
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas    1512404 Apr 19 13:19 agis_ddmendpoints.agis.ALL.json
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas     896775 Apr 19 13:19 log.49820244._000979.job.log.tgz.1
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas       6442 Apr 19 13:19 heartbeat_new.json
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas       6333 Apr 19 13:19 heartbeat.json
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas       8192 Apr 19 13:19 boinc_mmap_file
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas         29 Apr 19 13:19 wrapper_checkpoint.txt
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas        822 Apr 19 13:20 pilotlog.txt
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas    4307870 Apr 19 13:20 log.49820244._000979.job.log.1
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas        357 Apr 19 13:20 output.list
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas        410 Apr 19 13:20 runtime_log
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas    5222400 Apr 19 13:20 result.tar.gz
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas       8974 Apr 19 13:20 runtime_log.err
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas        667 Apr 19 13:20 7ae3b38989b5.diag
[2026-04-19 13:20:27] -rw-r--r--. 1 boincer umatlas      21167 Apr 19 13:20 stderr.txt
[2026-04-19 13:20:27] HITS file was successfully produced:
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas 267446197 Apr 19 13:16 shared/HITS.pool.root.1
[2026-04-19 13:20:27]  *** Contents of shared directory: ***
[2026-04-19 13:20:27] total 2447444
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas 2232826562 Apr 18 16:21 ATLAS.root_0
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas      15665 Apr 18 16:21 start_atlas.sh
[2026-04-19 13:20:27] -rw-r--r--. 2 boincer umatlas     656909 Apr 18 16:21 input.tar.gz
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas  267446197 Apr 19 13:16 HITS.pool.root.1
[2026-04-19 13:20:27] -rw-------. 1 boincer umatlas    5222400 Apr 19 13:20 result.tar.gz
13:20:29 (882902): run_atlas exited; CPU time 206723.587518
13:20:29 (882902): called boinc_finish(0)

</stderr_txt>
]]>

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