Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:09:32 (1028749): wrapper (7.7.26015): starting
09:09:32 (1028749): wrapper: running run_atlas (--nthreads 4)
[2026-04-19 09:09:32] Arguments: --nthreads 4
[2026-04-19 09:09:32] Threads: 4
[2026-04-19 09:09:32] Checking for CVMFS
[2026-04-19 09:09:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 09:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 09:09:33] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 09:09:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 09:09:33] 2.9.2.0 745507 1638 88140 158611 1 50 34248355 36864000 0 130560 0 1098346 99.987 64087 12753 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-19 09:09:33] CVMFS is ok
[2026-04-19 09:09:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 09:09:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 09:09:33] Further information can be found at the LHC@home message board.
[2026-04-19 09:09:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 09:09:33] Checking for apptainer binary...
[2026-04-19 09:09:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 09:09:33] Running /usr/bin/apptainer --version
[2026-04-19 09:09:33] apptainer version 1.4.1-1.1
[2026-04-19 09:09:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 09:09:33] cosA131
[2026-04-19 09:09:33] apptainer works
[2026-04-19 09:09:33] Set ATHENA_PROC_NUMBER=4
[2026-04-19 09:09:33] Set ATHENA_CORE_NUMBER=4
[2026-04-19 09:09:33] Starting ATLAS job with PandaID=7101146036
[2026-04-19 09:09:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 11:20:02]  *** The last 200 lines of the pilot log: ***
[2026-04-19 11:20:02] 2026-04-19 09:19:03,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | job 7101146036 has completed (purged errors)
[2026-04-19 11:20:02] 2026-04-19 09:19:03,521 | INFO     | overall cleanup function is called
[2026-04-19 11:20:02] 2026-04-19 09:19:04,528 | INFO     | --- collectZombieJob: --- 10, [1037372]
[2026-04-19 11:20:02] 2026-04-19 09:19:04,528 | INFO     | zombie collector waiting for pid 1037372
[2026-04-19 11:20:02] 2026-04-19 09:19:04,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 11:20:02] 2026-04-19 09:19:04,528 | INFO     | collected zombie processes
[2026-04-19 11:20:02] 2026-04-19 09:19:04,528 | INFO     | will attempt to kill all subprocesses of pid=1037372
[2026-04-19 11:20:02] 2026-04-19 09:19:04,572 | INFO     | process IDs to be killed: [1037372] (in reverse order)
[2026-04-19 11:20:02] 2026-04-19 09:19:04,605 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 11:20:02] 2026-04-19 09:19:04,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 11:20:02] 2026-04-19 09:19:04,607 | INFO     | did not find any defunct processes belonging to 1037372
[2026-04-19 11:20:02] 2026-04-19 09:19:04,608 | INFO     | did not find any defunct processes belonging to 1037372
[2026-04-19 11:20:02] 2026-04-19 09:19:04,608 | INFO     | Ready for new job
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | **************************************
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | **************************************
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | 
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | architecture information:
[2026-04-19 11:20:02] 2026-04-19 09:19:04,609 | INFO     | executing command: cat /etc/os-release
[2026-04-19 11:20:02] 2026-04-19 09:19:04,624 | INFO     | cat /etc/os-release:
[2026-04-19 11:20:02] NAME="CentOS Linux"
[2026-04-19 11:20:02] VERSION="7 (Core)"
[2026-04-19 11:20:02] ID="centos"
[2026-04-19 11:20:02] ID_LIKE="rhel fedora"
[2026-04-19 11:20:02] VERSION_ID="7"
[2026-04-19 11:20:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 11:20:02] ANSI_COLOR="0;31"
[2026-04-19 11:20:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 11:20:02] HOME_URL="https://www.centos.org/"
[2026-04-19 11:20:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 11:20:02] 
[2026-04-19 11:20:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 11:20:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 11:20:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 11:20:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 11:20:02] 
[2026-04-19 11:20:02] 2026-04-19 09:19:04,624 | INFO     | **************************************
[2026-04-19 11:20:02] 2026-04-19 09:19:05,127 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 11:20:02] 2026-04-19 09:19:05,143 | INFO     | sufficient remaining disk space (311972331520 B)
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | INFO     | update_server=False
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | INFO     | aborting loop
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 11:20:02] 2026-04-19 09:19:05,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 11:20:02] 2026-04-19 09:19:05,145 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-19 11:20:02] 2026-04-19 09:19:05,145 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 11:20:02] 2026-04-19 09:19:05,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 11:20:02] 2026-04-19 09:19:05,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 11:20:02] 2026-04-19 09:19:05,662 | INFO     | all data control threads have been joined
[2026-04-19 11:20:02] 2026-04-19 09:19:05,957 | INFO     | all payload control threads have been joined
[2026-04-19 11:20:02] 2026-04-19 09:19:06,146 | INFO     | [job] retrieve thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,146 | INFO     | [job] job monitor thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,147 | INFO     | [job] queue monitor thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,249 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,296 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,338 | INFO     | all job control threads have been joined
[2026-04-19 11:20:02] 2026-04-19 09:19:06,390 | INFO     | [data] copytool_in thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,668 | INFO     | [data] control thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,806 | INFO     | [payload] failed_post thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:06,962 | INFO     | [payload] control thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,108 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,150 | INFO     | [data] copytool_out thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,275 | INFO     | [payload] validate_post thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,343 | INFO     | [job] control thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,571 | INFO     | [job] validate thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:07,622 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:09,151 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 11:20:02] 2026-04-19 09:19:54,866 | INFO     | [monitor] cgroup control has ended
[2026-04-19 11:20:02] 2026-04-19 09:19:56,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943272314688)>', '<ExcThread(monitor, started 139941979879168)>']
[2026-04-19 11:20:02] 2026-04-19 09:19:57,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 11:20:02] 2026-04-19 09:19:57,422 | INFO     | [monitor] control thread has ended
[2026-04-19 11:20:02] 2026-04-19 09:20:01,844 | INFO     | all workflow threads have been joined
[2026-04-19 11:20:02] 2026-04-19 09:20:01,844 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 11:20:02] 2026-04-19 09:20:01,844 | INFO     | traces error code: 0
[2026-04-19 11:20:02] 2026-04-19 09:20:01,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 11:20:02] 2026-04-19 09:20:01,924 [wrapper] ==== pilot stdout END ====
[2026-04-19 11:20:02] 2026-04-19 09:20:01,928 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 11:20:02] 2026-04-19 09:20:01,933 [wrapper] pilotpid: 1032864
[2026-04-19 11:20:02] 2026-04-19 09:20:01,937 [wrapper] Pilot exit status: 0
[2026-04-19 11:20:02] 2026-04-19 09:20:01,950 [wrapper] pandaids: 7101146036
[2026-04-19 11:20:02] 2026-04-19 09:20:01,972 [wrapper] cleanup supervisor_pilot 1042888 1032865
[2026-04-19 11:20:02] 2026-04-19 09:20:01,976 [wrapper] Test setup, not cleaning
[2026-04-19 11:20:02] 2026-04-19 09:20:01,980 [wrapper] apfmon messages muted
[2026-04-19 11:20:02] 2026-04-19 09:20:01,984 [wrapper] ==== wrapper stdout END ====
[2026-04-19 11:20:02] 2026-04-19 09:20:01,988 [wrapper] ==== wrapper stderr END ====
[2026-04-19 11:20:02]  *** Error codes and diagnostics ***
[2026-04-19 11:20:02]     "exeErrorCode": 0,
[2026-04-19 11:20:02]     "pilotErrorCode": 0,
[2026-04-19 11:20:02]  *** Listing of results directory ***
[2026-04-19 11:20:02] total 2480444
[2026-04-19 11:20:02] -rwx------ 1 boinc boinc      36322 Apr 18 16:18 runpilot2-wrapper.sh
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc     644190 Apr 18 16:36 pilot3.tar.gz
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc       5094 Apr 18 16:39 queuedata.json
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc        100 Apr 19 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 11:20:02] -rwxr-xr-x 1 boinc boinc       7986 Apr 19 09:09 run_atlas
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc        105 Apr 19 09:09 job.xml
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc 2260916816 Apr 19 09:09 EVNT.49820373._000013.pool.root.1
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc     656908 Apr 19 09:09 input.tar.gz
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc      15665 Apr 19 09:09 start_atlas.sh
[2026-04-19 11:20:02] drwxrwx--x 2 boinc boinc       4096 Apr 19 09:09 shared
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc          0 Apr 19 09:09 boinc_setup_complete
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc       6293 Apr 19 09:09 init_data.xml
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc          0 Apr 19 09:09 boinc_lockfile
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc       2584 Apr 19 09:09 pandaJob.out
[2026-04-19 11:20:02] -rw------- 1 boinc boinc     997689 Apr 19 09:09 agis_schedconf.cvmfs.json
[2026-04-19 11:20:02] -rw------- 1 boinc boinc    1512404 Apr 19 09:09 agis_ddmendpoints.agis.ALL.json
[2026-04-19 11:20:02] -rw------- 1 boinc boinc        428 Apr 19 09:09 workernode_map.json
[2026-04-19 11:20:02] drwx------ 5 boinc boinc       4096 Apr 19 09:09 pilot3
[2026-04-19 11:20:02] -rw------- 1 boinc boinc         95 Apr 19 11:18 pilot_heartbeat.json
[2026-04-19 11:20:02] -rw------- 1 boinc boinc  272921088 Apr 19 11:18 HITS.49820375._002492.pool.root.1
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc        488 Apr 19 11:18 boinc_task_state.xml
[2026-04-19 11:20:02] -rw------- 1 boinc boinc       1019 Apr 19 11:18 memory_monitor_summary.json
[2026-04-19 11:20:02] -rw------- 1 boinc boinc     306295 Apr 19 11:19 log.49820375._002492.job.log.tgz.1
[2026-04-19 11:20:02] -rw------- 1 boinc boinc       6332 Apr 19 11:19 heartbeat_new.json
[2026-04-19 11:20:02] -rw------- 1 boinc boinc       6223 Apr 19 11:19 heartbeat.json
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc         27 Apr 19 11:19 wrapper_checkpoint.txt
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc       8192 Apr 19 11:19 boinc_mmap_file
[2026-04-19 11:20:02] -rw------- 1 boinc boinc       4551 Apr 19 11:20 pilotlog.txt
[2026-04-19 11:20:02] -rw------- 1 boinc boinc     735745 Apr 19 11:20 log.49820375._002492.job.log.1
[2026-04-19 11:20:02] -rw------- 1 boinc boinc        357 Apr 19 11:20 output.list
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc        410 Apr 19 11:20 runtime_log
[2026-04-19 11:20:02] -rw------- 1 boinc boinc    1064960 Apr 19 11:20 result.tar.gz
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc       8523 Apr 19 11:20 runtime_log.err
[2026-04-19 11:20:02] -rw------- 1 boinc boinc        659 Apr 19 11:20 92c3372c30a4.diag
[2026-04-19 11:20:02] -rw-r--r-- 1 boinc boinc      12153 Apr 19 11:20 stderr.txt
[2026-04-19 11:20:02] HITS file was successfully produced:
[2026-04-19 11:20:02] -rw------- 1 boinc boinc 272921088 Apr 19 11:18 shared/HITS.pool.root.1
[2026-04-19 11:20:02]  *** Contents of shared directory: ***
[2026-04-19 11:20:02] total 2476164
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc 2260916816 Apr 19 09:09 ATLAS.root_0
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc     656908 Apr 19 09:09 input.tar.gz
[2026-04-19 11:20:02] -rw-r--r-- 2 boinc boinc      15665 Apr 19 09:09 start_atlas.sh
[2026-04-19 11:20:02] -rw------- 1 boinc boinc  272921088 Apr 19 11:18 HITS.pool.root.1
[2026-04-19 11:20:02] -rw------- 1 boinc boinc    1064960 Apr 19 11:20 result.tar.gz
11:20:03 (1028749): run_atlas exited; CPU time 29348.024856
11:20:03 (1028749): called boinc_finish(0)

</stderr_txt>
]]>

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