Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:03 (2351): wrapper (7.7.26015): starting
04:36:03 (2351): wrapper: running run_atlas (--nthreads 8)
[2026-04-19 04:36:03] Arguments: --nthreads 8
[2026-04-19 04:36:03] Threads: 8
[2026-04-19 04:36:03] Checking for CVMFS
[2026-04-19 04:36:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 04:36:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 04:36:05] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 04:36:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 04:36:07] 2.11.2.0 14438 4877 97432 158605 2 53 23012661 25165825 1060 130560 0 1136126 99.876 3401428 20320 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-19 04:36:07] CVMFS is ok
[2026-04-19 04:36:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 04:36:07] Checking for apptainer binary...
[2026-04-19 04:36:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 04:36:07] Running /usr/bin/apptainer --version
[2026-04-19 04:36:07] apptainer version 1.3.2-1.el7
[2026-04-19 04:36:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 04:36:24] cg-vwn439.simple-grid.lan
[2026-04-19 04:36:24] apptainer works
[2026-04-19 04:36:24] Set ATHENA_PROC_NUMBER=8
[2026-04-19 04:36:24] Set ATHENA_CORE_NUMBER=8
[2026-04-19 04:36:24] Starting ATLAS job with PandaID=7091044713
[2026-04-19 04:36:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 08:54:02]  *** The last 200 lines of the pilot log: ***
[2026-04-19 08:54:02] 2026-04-19 06:53:05,763 | INFO     | log transfer has been attempted: DONE
[2026-04-19 08:54:02] 2026-04-19 06:53:05,764 | INFO     | job 7091044713 has finished - writing final server update
[2026-04-19 08:54:02] 2026-04-19 06:53:05,764 | INFO     | total number of processed events: 400 (read)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,766 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7091044713/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,767 | INFO     | extracted standard info from prmon json
[2026-04-19 08:54:02] 2026-04-19 06:53:05,767 | INFO     | extracted standard memory fields from prmon json
[2026-04-19 08:54:02] 2026-04-19 06:53:05,768 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-19 08:54:02] 2026-04-19 06:53:05,768 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-19 08:54:02] 2026-04-19 06:53:05,773 | INFO     | fitting pss+swap vs Time
[2026-04-19 08:54:02] 2026-04-19 06:53:05,774 | INFO     | sum of square deviations: 4340323240.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,776 | INFO     | sum of deviations: 104865167405.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,777 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,777 | INFO     | mean y: 2405149.473029046
[2026-04-19 08:54:02] 2026-04-19 06:53:05,777 | INFO     | intersect: 2405149.473029046
[2026-04-19 08:54:02] 2026-04-19 06:53:05,777 | INFO     | chi2: 8.971269202123914
[2026-04-19 08:54:02] 2026-04-19 06:53:05,778 | INFO     | sum of square deviations: 4075741535.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,783 | INFO     | sum of deviations: 135101099929.99998
[2026-04-19 08:54:02] 2026-04-19 06:53:05,784 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,784 | INFO     | mean y: 2422339.779661017
[2026-04-19 08:54:02] 2026-04-19 06:53:05,784 | INFO     | intersect: 2422339.779661017
[2026-04-19 08:54:02] 2026-04-19 06:53:05,784 | INFO     | chi2: 7.438041342240928
[2026-04-19 08:54:02] 2026-04-19 06:53:05,785 | INFO     | current chi2=7.438041342240928 (change=17.090423053184043 %)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,785 | INFO     | right removable region: 235
[2026-04-19 08:54:02] 2026-04-19 06:53:05,785 | INFO     | sum of square deviations: 4075741535.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,788 | INFO     | sum of deviations: 22786045133.500008
[2026-04-19 08:54:02] 2026-04-19 06:53:05,788 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,788 | INFO     | mean y: 2452427.0805084747
[2026-04-19 08:54:02] 2026-04-19 06:53:05,788 | INFO     | intersect: 2452427.0805084747
[2026-04-19 08:54:02] 2026-04-19 06:53:05,789 | INFO     | chi2: 4.123529520899822
[2026-04-19 08:54:02] 2026-04-19 06:53:05,789 | INFO     | current chi2=4.123529520899822 (change=54.0362748235936 %)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,789 | INFO     | sum of square deviations: 3822136780.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,791 | INFO     | sum of deviations: -33656419135.999992
[2026-04-19 08:54:02] 2026-04-19 06:53:05,792 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,792 | INFO     | mean y: 2486263.5714285714
[2026-04-19 08:54:02] 2026-04-19 06:53:05,792 | INFO     | intersect: 2486263.5714285714
[2026-04-19 08:54:02] 2026-04-19 06:53:05,792 | INFO     | chi2: 1.84494874538077
[2026-04-19 08:54:02] 2026-04-19 06:53:05,793 | INFO     | current chi2=1.84494874538077 (change=55.25802019775108 %)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,793 | INFO     | sum of square deviations: 3579276412.5
[2026-04-19 08:54:02] 2026-04-19 06:53:05,795 | INFO     | sum of deviations: -38598649201.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,795 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,796 | INFO     | mean y: 2489318.530973451
[2026-04-19 08:54:02] 2026-04-19 06:53:05,796 | INFO     | intersect: 2489318.530973451
[2026-04-19 08:54:02] 2026-04-19 06:53:05,796 | INFO     | chi2: 1.7962298491740492
[2026-04-19 08:54:02] 2026-04-19 06:53:05,797 | INFO     | current chi2=1.7962298491740492 (change=2.6406639386974415 %)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,797 | INFO     | left removable region: 15
[2026-04-19 08:54:02] 2026-04-19 06:53:05,797 | INFO     | sum of square deviations: 3301699115.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,799 | INFO     | sum of deviations: -7311491811.499998
[2026-04-19 08:54:02] 2026-04-19 06:53:05,799 | INFO     | mean x (centered): 0.0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,799 | INFO     | mean y: 2509584.1772727272
[2026-04-19 08:54:02] 2026-04-19 06:53:05,800 | INFO     | intersect: 2509584.1772727272
[2026-04-19 08:54:02] 2026-04-19 06:53:05,800 | INFO     | chi2: 0.08802442784259806
[2026-04-19 08:54:02] 2026-04-19 06:53:05,800 | INFO     | current memory leak: -2.21 B/s (using 220 data points, chi2=0.09)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,801 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,801 | INFO     | ..............................
[2026-04-19 08:54:02] 2026-04-19 06:53:05,801 | INFO     | . Timing measurements:
[2026-04-19 08:54:02] 2026-04-19 06:53:05,801 | INFO     | . get job = 0 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,802 | INFO     | . initial setup = 124 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,802 | INFO     | . payload setup = 235 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,805 | INFO     | . stage-in = 0 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,805 | INFO     | . payload execution = 14778 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,805 | INFO     | . stage-out = 4 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,805 | INFO     | . log creation = 1 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,805 | INFO     | ..............................
[2026-04-19 08:54:02] 2026-04-19 06:53:05,943 | INFO     | 
[2026-04-19 08:54:02] 2026-04-19 06:53:05,943 | INFO     | job summary report
[2026-04-19 08:54:02] 2026-04-19 06:53:05,943 | INFO     | --------------------------------------------------
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | PanDA job id: 7091044713
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | task id: 49645815
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | errors: (none)
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | pilot state: finished 
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | transexitcode: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | exeerrorcode: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | exeerrordiag: 
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | exitcode: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,944 | INFO     | exitmsg: OK
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | cpuconsumptiontime: 73320 s
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | nevents: 400
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | neventsw: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | pid: 10778
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | pgrp: 10778
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | corecount: 8
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | event service: False
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | sizes: {0: 2280976, 1: 2281661, 2: 2252781, 3: 2283490, 13: 2283518, 15018: 2314662, 15022: 2323660, 15024: 2323716, 15027: 2323910}
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | --------------------------------------------------
[2026-04-19 08:54:02] 2026-04-19 06:53:05,945 | INFO     | 
[2026-04-19 08:54:02] 2026-04-19 06:53:05,946 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-04-19 08:54:02] 2026-04-19 06:53:06,522 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 08:54:02] 2026-04-19 06:53:06,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 08:54:02] 2026-04-19 06:53:06,525 | INFO     | job 7091044713 has completed (purged errors)
[2026-04-19 08:54:02] 2026-04-19 06:53:06,525 | INFO     | overall cleanup function is called
[2026-04-19 08:54:02] 2026-04-19 06:53:07,533 | INFO     | --- collectZombieJob: --- 10, [10778]
[2026-04-19 08:54:02] 2026-04-19 06:53:07,533 | INFO     | zombie collector waiting for pid 10778
[2026-04-19 08:54:02] 2026-04-19 06:53:07,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 08:54:02] 2026-04-19 06:53:07,534 | INFO     | collected zombie processes
[2026-04-19 08:54:02] 2026-04-19 06:53:07,534 | INFO     | will attempt to kill all subprocesses of pid=10778
[2026-04-19 08:54:02] 2026-04-19 06:53:07,636 | INFO     | process IDs to be killed: [10778] (in reverse order)
[2026-04-19 08:54:02] 2026-04-19 06:53:08,485 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 08:54:02] 2026-04-19 06:53:08,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 08:54:02] 2026-04-19 06:53:08,487 | INFO     | did not find any defunct processes belonging to 10778
[2026-04-19 08:54:02] 2026-04-19 06:53:08,489 | INFO     | did not find any defunct processes belonging to 10778
[2026-04-19 08:54:02] 2026-04-19 06:53:08,489 | INFO     | Ready for new job
[2026-04-19 08:54:02] 2026-04-19 06:53:08,491 | INFO     | **************************************
[2026-04-19 08:54:02] 2026-04-19 06:53:08,491 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 08:54:02] 2026-04-19 06:53:08,491 | INFO     | **************************************
[2026-04-19 08:54:02] 2026-04-19 06:53:08,491 | INFO     | 
[2026-04-19 08:54:02] 2026-04-19 06:53:08,492 | INFO     | pilot is running in a VM
[2026-04-19 08:54:02] 2026-04-19 06:53:08,492 | INFO     | architecture information:
[2026-04-19 08:54:02] 2026-04-19 06:53:08,493 | INFO     | executing command: cat /etc/os-release
[2026-04-19 08:54:02] 2026-04-19 06:53:08,870 | INFO     | cat /etc/os-release:
[2026-04-19 08:54:02] NAME="CentOS Linux"
[2026-04-19 08:54:02] VERSION="7 (Core)"
[2026-04-19 08:54:02] ID="centos"
[2026-04-19 08:54:02] ID_LIKE="rhel fedora"
[2026-04-19 08:54:02] VERSION_ID="7"
[2026-04-19 08:54:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 08:54:02] ANSI_COLOR="0;31"
[2026-04-19 08:54:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 08:54:02] HOME_URL="https://www.centos.org/"
[2026-04-19 08:54:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 08:54:02] 
[2026-04-19 08:54:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 08:54:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 08:54:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 08:54:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 08:54:02] 
[2026-04-19 08:54:02] 2026-04-19 06:53:08,871 | INFO     | **************************************
[2026-04-19 08:54:02] 2026-04-19 06:53:09,374 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-04-19 08:54:02] 2026-04-19 06:53:09,468 | INFO     | sufficient remaining disk space (497140367360 B)
[2026-04-19 08:54:02] 2026-04-19 06:53:09,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 08:54:02] 2026-04-19 06:53:09,468 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 08:54:02] 2026-04-19 06:53:09,468 | INFO     | update_server=False
[2026-04-19 08:54:02] 2026-04-19 06:53:09,468 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 08:54:02] 2026-04-19 06:53:09,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 08:54:02] 2026-04-19 06:53:09,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 08:54:02] 2026-04-19 06:53:09,695 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-19 08:54:02] 2026-04-19 06:53:09,695 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-19 08:54:02] 2026-04-19 06:53:09,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 08:54:02] 2026-04-19 06:53:09,696 | INFO     | will abort loop
[2026-04-19 08:54:02] 2026-04-19 06:53:10,068 | INFO     | all data control threads have been joined
[2026-04-19 08:54:02] 2026-04-19 06:53:10,112 | INFO     | all payload control threads have been joined
[2026-04-19 08:54:02] 2026-04-19 06:53:10,213 | INFO     | all job control threads have been joined
[2026-04-19 08:54:02] 2026-04-19 06:53:10,474 | INFO     | [job] retrieve thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:10,607 | INFO     | [job] validate thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:10,701 | INFO     | [job] job monitor thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:10,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 08:54:02] 2026-04-19 06:53:11,074 | INFO     | [data] control thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,093 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,118 | INFO     | [payload] control thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,219 | INFO     | [job] control thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,476 | INFO     | [data] copytool_out thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,659 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,803 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,812 | INFO     | [data] copytool_in thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:11,964 | INFO     | [job] queue monitor thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:12,018 | INFO     | [payload] failed_post thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:12,058 | INFO     | [payload] validate_post thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:13,478 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 08:54:02] 2026-04-19 06:53:39,337 | INFO     | PID=6342 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-19 08:54:02] 2026-04-19 06:53:39,337 | INFO     | .. there are 2 such processes running
[2026-04-19 08:54:02] 2026-04-19 06:53:39,337 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 08:54:02] 2026-04-19 06:53:39,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 08:54:02] 2026-04-19 06:53:39,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 08:54:02] 2026-04-19 06:53:50,783 | INFO     | [monitor] cgroup control has ended
[2026-04-19 08:54:02] 2026-04-19 06:53:52,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967846381376)>', '<ExcThread(monitor, started 139967237957376)>']
[2026-04-19 08:54:02] 2026-04-19 06:53:52,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 08:54:02] 2026-04-19 06:53:52,415 | INFO     | [monitor] control thread has ended
[2026-04-19 08:54:02] 2026-04-19 06:53:57,204 | INFO     | all workflow threads have been joined
[2026-04-19 08:54:02] 2026-04-19 06:53:57,204 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 08:54:02] 2026-04-19 06:53:57,204 | INFO     | traces error code: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:57,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 08:54:02] 2026-04-19 06:53:57,553 [wrapper] ==== pilot stdout END ====
[2026-04-19 08:54:02] 2026-04-19 06:53:57,667 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 08:54:02] 2026-04-19 06:53:57,767 [wrapper] pilotpid: 6342
[2026-04-19 08:54:02] 2026-04-19 06:53:57,852 [wrapper] Pilot exit status: 0
[2026-04-19 08:54:02] 2026-04-19 06:53:58,384 [wrapper] pandaids: 7091044713
[2026-04-19 08:54:02] 2026-04-19 06:53:59,342 [wrapper] cleanup supervisor_pilot   473 6343
[2026-04-19 08:54:02] 2026-04-19 06:53:59,428 [wrapper] Test setup, not cleaning
[2026-04-19 08:54:02] 2026-04-19 06:53:59,540 [wrapper] apfmon messages muted
[2026-04-19 08:54:02] 2026-04-19 06:53:59,622 [wrapper] ==== wrapper stdout END ====
[2026-04-19 08:54:02] 2026-04-19 06:53:59,743 [wrapper] ==== wrapper stderr END ====
[2026-04-19 08:54:02]  *** Error codes and diagnostics ***
[2026-04-19 08:54:02]     "exeErrorCode": 0,
[2026-04-19 08:54:02]     "pilotErrorCode": 0,
[2026-04-19 08:54:02]  *** Listing of results directory ***
[2026-04-19 08:54:02] total 419560
[2026-04-19 08:54:02] -rwx------. 1 boinc boinc     36322 Apr 18 16:18 runpilot2-wrapper.sh
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc    644190 Apr 18 16:36 pilot3.tar.gz
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc      5094 Apr 18 16:39 queuedata.json
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc       100 Apr 19 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 08:54:02] -rwxr-xr-x. 1 boinc boinc      7986 Apr 19 04:36 run_atlas
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc       105 Apr 19 04:36 job.xml
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc 225645827 Apr 19 04:36 EVNT.48629115._000355.pool.root.1
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc      6306 Apr 19 04:36 init_data.xml
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc     15665 Apr 19 04:36 start_atlas.sh
[2026-04-19 08:54:02] drwxrwx--x. 2 boinc boinc        68 Apr 19 04:36 shared
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc    656957 Apr 19 04:36 input.tar.gz
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc         0 Apr 19 04:36 boinc_lockfile
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc      2627 Apr 19 04:36 pandaJob.out
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc       415 Apr 19 04:42 workernode_map.json
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc    997673 Apr 19 04:42 agis_schedconf.cvmfs.json
[2026-04-19 08:54:02] drwx------. 5 boinc boinc      4096 Apr 19 04:42 pilot3
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc 196332699 Apr 19 08:51 HITS.49645815._017809.pool.root.1
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc       489 Apr 19 08:51 boinc_task_state.xml
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc      1021 Apr 19 08:52 memory_monitor_summary.json
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc        95 Apr 19 08:52 pilot_heartbeat.json
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc   1512404 Apr 19 08:52 agis_ddmendpoints.agis.ALL.json
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc    395376 Apr 19 08:53 log.49645815._017809.job.log.tgz.1
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc      6345 Apr 19 08:53 heartbeat_new.json
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc      6236 Apr 19 08:53 heartbeat.json
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc      8192 Apr 19 08:53 boinc_mmap_file
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc        28 Apr 19 08:53 wrapper_checkpoint.txt
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc      5064 Apr 19 08:53 pilotlog.txt
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc   1405062 Apr 19 08:53 log.49645815._017809.job.log.1
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc       357 Apr 19 08:54 output.list
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc       410 Apr 19 08:54 runtime_log
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc   1822720 Apr 19 08:54 result.tar.gz
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc      8438 Apr 19 08:54 runtime_log.err
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc       655 Apr 19 08:54 92b616d4f7d4.diag
[2026-04-19 08:54:02] -rw-r--r--. 1 boinc boinc     20633 Apr 19 08:54 stderr.txt
[2026-04-19 08:54:02] HITS file was successfully produced:
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc 196332699 Apr 19 08:51 shared/HITS.pool.root.1
[2026-04-19 08:54:02]  *** Contents of shared directory: ***
[2026-04-19 08:54:02] total 414532
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc 225645827 Apr 19 04:36 ATLAS.root_0
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc     15665 Apr 19 04:36 start_atlas.sh
[2026-04-19 08:54:02] -rw-r--r--. 2 boinc boinc    656957 Apr 19 04:36 input.tar.gz
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc 196332699 Apr 19 08:51 HITS.pool.root.1
[2026-04-19 08:54:02] -rw-------. 1 boinc boinc   1822720 Apr 19 08:54 result.tar.gz
08:54:03 (2351): run_atlas exited; CPU time 73478.690078
08:54:03 (2351): called boinc_finish(0)

</stderr_txt>
]]>

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