Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:40:07 (2744193): wrapper (7.7.26015): starting
06:40:07 (2744193): wrapper: running run_atlas (--nthreads 3)
[2026-04-19 06:40:07] Arguments: --nthreads 3
[2026-04-19 06:40:07] Threads: 3
[2026-04-19 06:40:07] Checking for CVMFS
[2026-04-19 06:40:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 06:40:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 06:40:08] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 06:40:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 06:40:08] 2.9.2.0 2545772 1266 72356 158608 3 50 26955451 36864001 0 130560 0 663276 99.985 46371 15639 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-19 06:40:08] CVMFS is ok
[2026-04-19 06:40:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 06:40:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 06:40:08] Further information can be found at the LHC@home message board.
[2026-04-19 06:40:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 06:40:08] Checking for apptainer binary...
[2026-04-19 06:40:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 06:40:08] Running /usr/bin/apptainer --version
[2026-04-19 06:40:08] apptainer version 1.4.1-1.1
[2026-04-19 06:40:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 06:40:08] cosA121a
[2026-04-19 06:40:08] apptainer works
[2026-04-19 06:40:08] Set ATHENA_PROC_NUMBER=3
[2026-04-19 06:40:08] Set ATHENA_CORE_NUMBER=3
[2026-04-19 06:40:08] Starting ATLAS job with PandaID=7101063036
[2026-04-19 06:40:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 09:06:56]  *** The last 200 lines of the pilot log: ***
[2026-04-19 09:06:56] 2026-04-19 07:06:25,797 | INFO     | --- collectZombieJob: --- 10, [2752679]
[2026-04-19 09:06:56] 2026-04-19 07:06:25,797 | INFO     | zombie collector waiting for pid 2752679
[2026-04-19 09:06:56] 2026-04-19 07:06:25,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 09:06:56] 2026-04-19 07:06:25,797 | INFO     | collected zombie processes
[2026-04-19 09:06:56] 2026-04-19 07:06:25,797 | INFO     | will attempt to kill all subprocesses of pid=2752679
[2026-04-19 09:06:56] 2026-04-19 07:06:25,867 | INFO     | process IDs to be killed: [2752679] (in reverse order)
[2026-04-19 09:06:56] 2026-04-19 07:06:25,900 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 09:06:56] 2026-04-19 07:06:25,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 09:06:56] 2026-04-19 07:06:25,903 | INFO     | did not find any defunct processes belonging to 2752679
[2026-04-19 09:06:56] 2026-04-19 07:06:25,904 | INFO     | did not find any defunct processes belonging to 2752679
[2026-04-19 09:06:56] 2026-04-19 07:06:25,905 | INFO     | Ready for new job
[2026-04-19 09:06:56] 2026-04-19 07:06:25,905 | INFO     | **************************************
[2026-04-19 09:06:56] 2026-04-19 07:06:25,905 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 09:06:56] 2026-04-19 07:06:25,905 | INFO     | **************************************
[2026-04-19 09:06:56] 2026-04-19 07:06:25,905 | INFO     | 
[2026-04-19 09:06:56] 2026-04-19 07:06:25,906 | INFO     | architecture information:
[2026-04-19 09:06:56] 2026-04-19 07:06:25,906 | INFO     | executing command: cat /etc/os-release
[2026-04-19 09:06:56] 2026-04-19 07:06:25,915 | INFO     | cat /etc/os-release:
[2026-04-19 09:06:56] NAME="CentOS Linux"
[2026-04-19 09:06:56] VERSION="7 (Core)"
[2026-04-19 09:06:56] ID="centos"
[2026-04-19 09:06:56] ID_LIKE="rhel fedora"
[2026-04-19 09:06:56] VERSION_ID="7"
[2026-04-19 09:06:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 09:06:56] ANSI_COLOR="0;31"
[2026-04-19 09:06:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 09:06:56] HOME_URL="https://www.centos.org/"
[2026-04-19 09:06:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 09:06:56] 
[2026-04-19 09:06:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 09:06:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 09:06:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 09:06:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 09:06:56] 
[2026-04-19 09:06:56] 2026-04-19 07:06:25,915 | INFO     | **************************************
[2026-04-19 09:06:56] 2026-04-19 07:06:26,419 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 09:06:56] 2026-04-19 07:06:26,432 | INFO     | sufficient remaining disk space (322637398016 B)
[2026-04-19 09:06:56] 2026-04-19 07:06:26,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 09:06:56] 2026-04-19 07:06:26,432 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 09:06:56] 2026-04-19 07:06:26,432 | INFO     | update_server=False
[2026-04-19 09:06:56] 2026-04-19 07:06:26,432 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 09:06:56] 2026-04-19 07:06:26,433 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 09:06:56] 2026-04-19 07:06:26,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 09:06:56] 2026-04-19 07:06:26,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 09:06:56] 2026-04-19 07:06:26,574 | INFO     | aborting loop
[2026-04-19 09:06:56] 2026-04-19 07:06:27,429 | INFO     | all data control threads have been joined
[2026-04-19 09:06:56] 2026-04-19 07:06:27,438 | INFO     | [job] retrieve thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,438 | INFO     | [job] queue monitor thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,579 | INFO     | [job] job monitor thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,702 | INFO     | all payload control threads have been joined
[2026-04-19 09:06:56] 2026-04-19 07:06:27,734 | INFO     | [payload] validate_post thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,868 | INFO     | [job] validate thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,914 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,914 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:27,988 | INFO     | all job control threads have been joined
[2026-04-19 09:06:56] 2026-04-19 07:06:28,099 | INFO     | [monitor] cgroup control has ended
[2026-04-19 09:06:56] 2026-04-19 07:06:28,223 | INFO     | [data] copytool_in thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,435 | INFO     | [data] control thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,435 | INFO     | [data] copytool_out thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,666 | INFO     | [payload] failed_post thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,708 | INFO     | [payload] control thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,907 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:28,994 | INFO     | [job] control thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:29,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 09:06:56] 2026-04-19 07:06:33,907 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:36,810 | INFO     | job.realtimelogging is not enabled
[2026-04-19 09:06:56] 2026-04-19 07:06:37,811 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 09:06:56] 2026-04-19 07:06:39,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866178131776)>', '<ExcThread(monitor, started 139865888139008)>']
[2026-04-19 09:06:56] 2026-04-19 07:06:44,253 | INFO     | all workflow threads have been joined
[2026-04-19 09:06:56] 2026-04-19 07:06:44,253 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 09:06:56] 2026-04-19 07:06:44,253 | INFO     | traces error code: 0
[2026-04-19 09:06:56] 2026-04-19 07:06:44,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 09:06:56] 2026-04-19 07:06:55,979 | INFO     | PID=2748245 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-19 09:06:56] 2026-04-19 07:06:55,979 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 09:06:56] 2026-04-19 07:06:55,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 09:06:56] 2026-04-19 07:06:55,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 09:06:56] 2026-04-19 07:06:55,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 09:06:56] 2026-04-19 07:06:55,980 | INFO     | [monitor] control thread has ended
[2026-04-19 09:06:56] 2026-04-19 07:06:56,027 [wrapper] ==== pilot stdout END ====
[2026-04-19 09:06:56] 2026-04-19 07:06:56,029 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 09:06:56] 2026-04-19 07:06:56,032 [wrapper] pilotpid: 2748245
[2026-04-19 09:06:56] 2026-04-19 07:06:56,034 [wrapper] Pilot exit status: 0
[2026-04-19 09:06:56] 2026-04-19 07:06:56,042 [wrapper] pandaids: 7101063036
[2026-04-19 09:06:56] 2026-04-19 07:06:56,063 [wrapper] cleanup supervisor_pilot 2760906 2748246
[2026-04-19 09:06:56] 2026-04-19 07:06:56,065 [wrapper] Test setup, not cleaning
[2026-04-19 09:06:56] 2026-04-19 07:06:56,068 [wrapper] apfmon messages muted
[2026-04-19 09:06:56] 2026-04-19 07:06:56,070 [wrapper] ==== wrapper stdout END ====
[2026-04-19 09:06:56] 2026-04-19 07:06:56,072 [wrapper] ==== wrapper stderr END ====
[2026-04-19 09:06:56]  *** Error codes and diagnostics ***
[2026-04-19 09:06:56]     "exeErrorCode": 0,
[2026-04-19 09:06:56]     "pilotErrorCode": 0,
[2026-04-19 09:06:56]  *** Listing of results directory ***
[2026-04-19 09:06:56] total 2455000
[2026-04-19 09:06:56] -rwx------ 1 boinc boinc      36322 Apr 18 16:17 runpilot2-wrapper.sh
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc     644190 Apr 18 16:36 pilot3.tar.gz
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc       5094 Apr 18 16:39 queuedata.json
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc        100 Apr 19 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 09:06:56] -rwxr-xr-x 1 boinc boinc       7986 Apr 19 06:40 run_atlas
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc        105 Apr 19 06:40 job.xml
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc 2237375555 Apr 19 06:40 EVNT.49820242._000007.pool.root.1
[2026-04-19 09:06:56] drwxrwx--x 2 boinc boinc       4096 Apr 19 06:40 shared
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc     656908 Apr 19 06:40 input.tar.gz
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc      15665 Apr 19 06:40 start_atlas.sh
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc          0 Apr 19 06:40 boinc_setup_complete
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc       6356 Apr 19 06:40 init_data.xml
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc          0 Apr 19 06:40 boinc_lockfile
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc       2550 Apr 19 06:40 pandaJob.out
[2026-04-19 09:06:56] -rw------- 1 boinc boinc     997665 Apr 19 06:40 agis_schedconf.cvmfs.json
[2026-04-19 09:06:56] -rw------- 1 boinc boinc    1512404 Apr 19 06:40 agis_ddmendpoints.agis.ALL.json
[2026-04-19 09:06:56] -rw------- 1 boinc boinc        429 Apr 19 06:40 workernode_map.json
[2026-04-19 09:06:56] drwx------ 5 boinc boinc       4096 Apr 19 06:40 pilot3
[2026-04-19 09:06:56] -rw------- 1 boinc boinc  270038928 Apr 19 09:05 HITS.49820244._001541.pool.root.1
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc        488 Apr 19 09:06 boinc_task_state.xml
[2026-04-19 09:06:56] -rw------- 1 boinc boinc         95 Apr 19 09:06 pilot_heartbeat.json
[2026-04-19 09:06:56] -rw------- 1 boinc boinc       1026 Apr 19 09:06 memory_monitor_summary.json
[2026-04-19 09:06:56] -rw------- 1 boinc boinc     411832 Apr 19 09:06 log.49820244._001541.job.log.tgz.1
[2026-04-19 09:06:56] -rw------- 1 boinc boinc       6343 Apr 19 09:06 heartbeat_new.json
[2026-04-19 09:06:56] -rw------- 1 boinc boinc       6234 Apr 19 09:06 heartbeat.json
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc       8192 Apr 19 09:06 boinc_mmap_file
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc         27 Apr 19 09:06 wrapper_checkpoint.txt
[2026-04-19 09:06:56] -rw------- 1 boinc boinc        747 Apr 19 09:06 pilotlog.txt
[2026-04-19 09:06:56] -rw------- 1 boinc boinc     819187 Apr 19 09:06 log.49820244._001541.job.log.1
[2026-04-19 09:06:56] -rw------- 1 boinc boinc        357 Apr 19 09:06 output.list
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc        410 Apr 19 09:06 runtime_log
[2026-04-19 09:06:56] -rw------- 1 boinc boinc    1249280 Apr 19 09:06 result.tar.gz
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc       8528 Apr 19 09:06 runtime_log.err
[2026-04-19 09:06:56] -rw------- 1 boinc boinc        660 Apr 19 09:06 9278b793d067.diag
[2026-04-19 09:06:56] -rw-r--r-- 1 boinc boinc      10488 Apr 19 09:06 stderr.txt
[2026-04-19 09:06:56] HITS file was successfully produced:
[2026-04-19 09:06:56] -rw------- 1 boinc boinc 270038928 Apr 19 09:05 shared/HITS.pool.root.1
[2026-04-19 09:06:56]  *** Contents of shared directory: ***
[2026-04-19 09:06:56] total 2450540
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc 2237375555 Apr 19 06:40 ATLAS.root_0
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc     656908 Apr 19 06:40 input.tar.gz
[2026-04-19 09:06:56] -rw-r--r-- 2 boinc boinc      15665 Apr 19 06:40 start_atlas.sh
[2026-04-19 09:06:56] -rw------- 1 boinc boinc  270038928 Apr 19 09:05 HITS.pool.root.1
[2026-04-19 09:06:56] -rw------- 1 boinc boinc    1249280 Apr 19 09:06 result.tar.gz
09:06:57 (2744193): run_atlas exited; CPU time 25358.904636
09:06:57 (2744193): called boinc_finish(0)

</stderr_txt>
]]>

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