Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-20 10:43:42 (3560): vboxwrapper version 26210
2026-04-20 10:43:42 (3560): BOINC client version: 8.2.8
2026-04-20 10:43:44 (3560): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2026-04-20 10:43:44 (3560): Successfully copied 'init_data.xml' to the shared directory.
2026-04-20 10:43:44 (3560): Create VM. (boinc_2d30d83281931898, slot#0)
2026-04-20 10:43:45 (3560): Setting Memory Size for VM. (4300MB)
2026-04-20 10:43:45 (3560): Setting CPU Count for VM. (3)
2026-04-20 10:43:45 (3560): Setting Chipset Options for VM.
2026-04-20 10:43:46 (3560): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-20 10:43:46 (3560): Setting Boot Options for VM.
2026-04-20 10:43:47 (3560): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-20 10:43:47 (3560): Enabling VM Network Access.
2026-04-20 10:43:47 (3560): Disabling USB Support for VM.
2026-04-20 10:43:47 (3560): Disabling COM Port Support for VM.
2026-04-20 10:43:48 (3560): Disabling LPT Port Support for VM.
2026-04-20 10:43:48 (3560): Disabling Audio Support for VM.
2026-04-20 10:43:48 (3560): Disabling Clipboard Support for VM.
2026-04-20 10:43:49 (3560): Disabling Drag and Drop Support for VM.
2026-04-20 10:43:49 (3560): Adding storage controller(s) to VM.
2026-04-20 10:43:49 (3560): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-20 10:43:51 (3560): Adding VirtualBox Guest Additions to VM.
2026-04-20 10:43:52 (3560): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-20 10:43:52 (3560): forwarding host port 50694 to guest port 80
2026-04-20 10:43:52 (3560): Enabling remote desktop for VM.
2026-04-20 10:43:52 (3560): Required extension pack not installed, remote desktop not enabled.
2026-04-20 10:43:52 (3560): Enabling shared directory for VM.
2026-04-20 10:43:53 (3560): Starting VM using VBoxManage interface. (boinc_2d30d83281931898, slot#0)
2026-04-20 10:44:01 (3560): Successfully started VM. (PID = '15152')
2026-04-20 10:44:01 (3560): Reporting VM Process ID to BOINC.
2026-04-20 10:44:01 (3560): Guest Log: BIOS: VirtualBox 7.0.14
2026-04-20 10:44:01 (3560): Guest Log: CPUID EDX: 0x178bfbff
2026-04-20 10:44:01 (3560): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-20 10:44:01 (3560): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-20 10:44:01 (3560): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-20 10:44:01 (3560): Detected: Web Application Enabled (http://localhost:50694)
2026-04-20 10:44:01 (3560): Preference change detected
2026-04-20 10:44:01 (3560): Setting CPU throttle for VM. (100%)
2026-04-20 10:44:01 (3560): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-20 10:44:03 (3560): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-20 10:44:03 (3560): Guest Log: BIOS: Booting from Hard Disk...
2026-04-20 10:44:06 (3560): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-20 10:44:06 (3560): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-20 10:44:06 (3560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-20 10:44:11 (3560): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-20 10:44:11 (3560): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-04-20 10:44:17 (3560): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000189 main     Log opened 2026-04-20T10:44:15.857758000Z
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000370 main     OS Product: Linux
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000413 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000456 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000489 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000490 main     Process ID: 1285
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.000490 main     Package type: LINUX_64BITS_GENERIC
2026-04-20 10:44:17 (3560): Guest Log: 00:00:00.001984 main     5.2.32 r132073 started. Verbose level = 0
2026-04-20 10:44:17 (3560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-20 10:44:17 (3560): Guest Log: [INFO] Mounting shared directory
2026-04-20 10:44:17 (3560): Guest Log: [INFO] Checking for init_data.xml
2026-04-20 10:44:27 (3560): Guest Log: 00:00:10.004244 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 653 556 000ns (GuestNow=1 776 696 266 514 663 000 ns GuestLast=1 776 681 855 861 107 000 ns fSetTimeLastLoop=true )
2026-04-20 10:45:23 (3560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-20 10:45:23 (3560): Guest Log: [INFO] Detected branch: prod
2026-04-20 10:45:24 (3560): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-20 10:45:24 (3560): Guest Log: Copying input files
2026-04-20 10:45:42 (3560): Guest Log: Copied input files into RunAtlas.
2026-04-20 10:45:42 (3560): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-20 10:45:42 (3560): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-20 10:45:42 (3560): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-20 10:45:42 (3560): Guest Log: Further information can be found at the LHC@home message board.
2026-04-20 10:46:40 (3560): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-20 10:46:40 (3560): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-20 10:46:40 (3560): Guest Log: 2.6.3.0 1587 2 30160 158653 3 1 3117648 4096001 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-04-20 10:46:41 (3560): Guest Log: copied the webapp to /var/www
2026-04-20 10:46:41 (3560): Guest Log: ATHENA_PROC_NUMBER=3
2026-04-20 10:46:41 (3560): Guest Log: ATHENA_CORE_NUMBER=3
2026-04-20 10:46:42 (3560): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-20 10:46:42 (3560): Guest Log:  *** Starting ATLAS job. (PandaID=7101016376 taskID=49820375) ***
2026-04-20 12:24:37 (3560): Status Report: Elapsed Time: '6000.917150'
2026-04-20 12:24:37 (3560): Status Report: CPU Time: '16278.687500'
2026-04-20 14:05:50 (3560): Status Report: Elapsed Time: '12001.431803'
2026-04-20 14:05:50 (3560): Status Report: CPU Time: '33812.453125'
2026-04-20 15:46:17 (3560): Status Report: Elapsed Time: '18001.744566'
2026-04-20 15:46:17 (3560): Status Report: CPU Time: '51594.937500'
2026-04-20 17:27:03 (3560): Status Report: Elapsed Time: '24002.197248'
2026-04-20 17:27:03 (3560): Status Report: CPU Time: '69393.609375'
2026-04-20 17:59:47 (3560): Guest Log:  *** Job finished ***
2026-04-20 17:59:47 (3560): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:33,382 | INFO     | all workflow threads have been joined
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:33,383 | INFO     | end of generic workflow (traces error code: 0)
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:33,383 | INFO     | traces error code: 0
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:33,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,942 | INFO     | PID=5990 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,943 | INFO     | found 0 job(s) in 20 queues
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,943 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:45,944 | INFO     | [monitor] control thread has ended
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,055 [wrapper] ==== pilot stdout END ====
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,061 [wrapper] ==== wrapper stdout RESUME ====
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,066 [wrapper] pilotpid: 5990
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,072 [wrapper] Pilot exit status: 0
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,424 [wrapper] pandaids: 7101016376
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,453 [wrapper] cleanup supervisor_pilot 31727 5991
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,460 [wrapper] Test setup, not cleaning
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,467 [wrapper] apfmon messages muted
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,473 [wrapper] ==== wrapper stdout END ====
2026-04-20 17:59:47 (3560): Guest Log: 2026-04-20 21:59:46,479 [wrapper] ==== wrapper stderr END ====
2026-04-20 17:59:47 (3560): Guest Log:  *** Error codes and diagnostics ***
2026-04-20 17:59:47 (3560): Guest Log:     "exeErrorCode": 0,
2026-04-20 17:59:47 (3560): Guest Log:     "pilotErrorCode": 0,
2026-04-20 17:59:47 (3560): Guest Log:  *** Listing of results directory ***
2026-04-20 17:59:47 (3560): Guest Log: total 284492
2026-04-20 17:59:47 (3560): Guest Log: -rwx------. 1 atlas atlas     36322 Apr 18 12:40 runpilot2-wrapper.sh
2026-04-20 17:59:47 (3560): Guest Log: -rw-r--r--. 1 atlas atlas    644190 Apr 18 12:50 pilot3.tar.gz
2026-04-20 17:59:47 (3560): Guest Log: -rw-r--r--. 1 atlas atlas      5094 Apr 18 12:54 queuedata.json
2026-04-20 17:59:47 (3560): Guest Log: -rwxr-xr-x. 1 atlas atlas      8341 Apr 20 14:45 init_data.xml
2026-04-20 17:59:47 (3560): Guest Log: -rwxr-xr-x. 1 atlas atlas    656909 Apr 20 14:45 input.tar.gz
2026-04-20 17:59:47 (3560): Guest Log: -rwxr-xr-x. 1 atlas atlas     15665 Apr 20 14:45 start_atlas.sh
2026-04-20 17:59:47 (3560): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 20 14:45 EVNT.49820373._000005.pool.root.1 -> /data/./ATLAS.root_0
2026-04-20 17:59:47 (3560): Guest Log: -rw-r--r--. 1 atlas atlas      2584 Apr 20 14:46 pandaJob.out
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas    997272 Apr 20 14:47 agis_schedconf.cvmfs.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas       439 Apr 20 14:47 workernode_map.json
2026-04-20 17:59:47 (3560): Guest Log: drwx------. 5 atlas atlas      4096 Apr 20 14:48 pilot3
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas 281778093 Apr 20 21:58 HITS.49820375._001277.pool.root.1
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 20 21:59 memory_monitor_summary.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas   1512404 Apr 20 21:59 agis_ddmendpoints.agis.ALL.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas    461637 Apr 20 21:59 log.49820375._001277.job.log.tgz.1
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas      6407 Apr 20 21:59 heartbeat_new.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas      6298 Apr 20 21:59 heartbeat.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas        95 Apr 20 21:59 pilot_heartbeat.json
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas       744 Apr 20 21:59 pilotlog.txt
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas   2312836 Apr 20 21:59 log.49820375._001277.job.log.1
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas       357 Apr 20 21:59 output.list
2026-04-20 17:59:47 (3560): Guest Log: -rw-r--r--. 1 atlas atlas       410 Apr 20 21:59 runtime_log
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas   2795520 Apr 20 21:59 result.tar.gz
2026-04-20 17:59:47 (3560): Guest Log: -rw-r--r--. 1 atlas atlas      8386 Apr 20 21:59 runtime_log.err
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas       662 Apr 20 21:59 7bc332bae706.diag
2026-04-20 17:59:47 (3560): Guest Log: Looking for outputfile HITS.49820375._001277.pool.root.1
2026-04-20 17:59:47 (3560): Guest Log: HITS file was successfully produced
2026-04-20 17:59:47 (3560): Guest Log: -rw-------. 1 atlas atlas 281778093 Apr 20 21:58 /home/atlas/RunAtlas/HITS.49820375._001277.pool.root.1
2026-04-20 17:59:48 (3560): Guest Log: Successfully finished the ATLAS job!
2026-04-20 17:59:48 (3560): Guest Log: Copying the results back to the shared directory!
2026-04-20 17:59:49 (3560): Guest Log:  *** Contents of shared directory: ***
2026-04-20 17:59:49 (3560): Guest Log: total 2480700
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root 2254970646 Apr 20 14:43 ATLAS.root_0
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root  281778093 Apr 20 21:59 HITS.pool.root.1
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root       8341 Apr 20 14:43 init_data.xml
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root     656909 Apr 18 16:57 input.tar.gz
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root    2795520 Apr 20 21:59 result.tar.gz
2026-04-20 17:59:49 (3560): Guest Log: -rwxrwxrwx. 1 root root      15665 Apr 18 16:57 start_atlas.sh
2026-04-20 17:59:49 (3560): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-20 17:59:49 (3560): VM Completion File Detected.
2026-04-20 17:59:49 (3560): Powering off VM.
2026-04-20 17:59:50 (3560): Successfully stopped VM.
2026-04-20 17:59:50 (3560): Deregistering VM. (boinc_2d30d83281931898, slot#0)
2026-04-20 17:59:50 (3560): Removing network bandwidth throttle group from VM.
2026-04-20 17:59:51 (3560): Removing VM from VirtualBox.
2026-04-20 17:59:56 (3560): called boinc_finish(0)

</stderr_txt>
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