Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:33:18 (2255609): wrapper (7.7.26015): starting
11:33:18 (2255609): wrapper: running run_atlas (--nthreads 9)
[2026-04-18 11:33:18] Arguments: --nthreads 9
[2026-04-18 11:33:18] Threads: 9
[2026-04-18 11:33:18] Checking for CVMFS
[2026-04-18 11:33:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 11:33:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 11:33:19] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 11:33:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 11:33:20] 2.13.3.0 7489 236154 351460 158589 0 159 24507780 32935937 24506 16776704 0 1078458649 99.559 1262084166 36536 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-18 11:33:20] CVMFS is ok
[2026-04-18 11:33:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 11:33:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 11:33:20] Further information can be found at the LHC@home message board.
[2026-04-18 11:33:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 11:33:20] Checking for apptainer binary...
[2026-04-18 11:33:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 11:33:20] Running /usr/bin/apptainer --version
[2026-04-18 11:33:20] apptainer version 1.4.5-2.el9
[2026-04-18 11:33:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 11:33:20] c7-13-32.aglt2.org
[2026-04-18 11:33:20] apptainer works
[2026-04-18 11:33:20] Set ATHENA_PROC_NUMBER=9
[2026-04-18 11:33:20] Set ATHENA_CORE_NUMBER=9
[2026-04-18 11:33:20] Starting ATLAS job with PandaID=7088674396
[2026-04-18 11:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:45:17 (2932066): wrapper (7.7.26015): starting
14:45:17 (2932066): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 14:45:17] Arguments: --nthreads 8
[2026-04-18 14:45:17] Threads: 8
[2026-04-18 14:45:17] This job has been restarted, cleaning up previous attempt
[2026-04-18 14:45:18] Checking for CVMFS
[2026-04-18 14:45:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 14:45:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 14:45:18] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 14:45:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 14:45:19] 2.13.3.0 7489 236346 351836 158594 1 145 25483886 32935937 22528 16776704 0 1079320321 99.560 1262148576 36535 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-18 14:45:19] CVMFS is ok
[2026-04-18 14:45:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 14:45:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 14:45:19] Further information can be found at the LHC@home message board.
[2026-04-18 14:45:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 14:45:19] Checking for apptainer binary...
[2026-04-18 14:45:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 14:45:19] Running /usr/bin/apptainer --version
[2026-04-18 14:45:19] apptainer version 1.4.5-2.el9
[2026-04-18 14:45:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 14:45:19] c7-13-32.aglt2.org
[2026-04-18 14:45:19] apptainer works
[2026-04-18 14:45:19] Set ATHENA_PROC_NUMBER=8
[2026-04-18 14:45:19] Set ATHENA_CORE_NUMBER=8
[2026-04-18 14:45:19] Starting ATLAS job with PandaID=7088674396
[2026-04-18 14:45:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 17:29:33]  *** The last 200 lines of the pilot log: ***
[2026-04-18 17:29:33] 2026-04-18 21:28:55,636 | INFO     | stage-out finished correctly
[2026-04-18 17:29:33] 2026-04-18 21:28:57,123 | INFO     | monitor loop #643: job 0:7088674396 is in state 'finished'
[2026-04-18 17:29:33] 2026-04-18 21:28:57,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-18 17:29:33] 2026-04-18 21:28:57,921 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-18 17:29:33] 2026-04-18 21:28:58,245 | INFO     | job 7088674396 has state=finished
[2026-04-18 17:29:33] 2026-04-18 21:28:58,245 | INFO     | preparing for final server update for job 7088674396 in state='finished'
[2026-04-18 17:29:33] 2026-04-18 21:28:58,246 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7088674396/jobReport.json
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | this job has now completed (state=finished)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | log transfer has been attempted: DONE
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | job 7088674396 has finished - writing final server update
[2026-04-18 17:29:33] 2026-04-18 21:28:58,248 | INFO     | total number of processed events: 400 (read)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,315 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7088674396/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,316 | INFO     | extracted standard info from prmon json
[2026-04-18 17:29:33] 2026-04-18 21:28:58,316 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 17:29:33] 2026-04-18 21:28:58,316 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 17:29:33] 2026-04-18 21:28:58,317 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 17:29:33] 2026-04-18 21:28:58,319 | INFO     | fitting pss+swap vs Time
[2026-04-18 17:29:33] 2026-04-18 21:28:58,319 | INFO     | sum of square deviations: 1270104425.9437523
[2026-04-18 17:29:33] 2026-04-18 21:28:58,320 | INFO     | sum of deviations: 21419804453.693756
[2026-04-18 17:29:33] 2026-04-18 21:28:58,320 | INFO     | mean x (centered): 0.0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,320 | INFO     | mean y: 2475344.66875
[2026-04-18 17:29:33] 2026-04-18 21:28:58,320 | INFO     | intersect: 2475344.66875
[2026-04-18 17:29:33] 2026-04-18 21:28:58,321 | INFO     | chi2: 3.163664428604082
[2026-04-18 17:29:33] 2026-04-18 21:28:58,321 | INFO     | sum of square deviations: 1154736650.03871
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | sum of deviations: 31204548057.135468
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | mean x (centered): 0.0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | mean y: 2487924.0129032256
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | intersect: 2487924.0129032256
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | chi2: 2.4220852175660803
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | current chi2=2.4220852175660803 (change=23.4405142445911 %)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | right removable region: 154
[2026-04-18 17:29:33] 2026-04-18 21:28:58,322 | INFO     | sum of square deviations: 1154695780.03871
[2026-04-18 17:29:33] 2026-04-18 21:28:58,334 | INFO     | sum of deviations: -14262805142.67742
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | mean x (centered): 0.0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | mean y: 2522093.935483871
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | intersect: 2522093.935483871
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | chi2: 0.8643978868735482
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | current chi2=0.8643978868735482 (change=72.67732067098689 %)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,335 | INFO     | sum of square deviations: 1046505904.4600011
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | sum of deviations: -17458732835.020004
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | mean x (centered): 0.0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | mean y: 2526481.8866666667
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | intersect: 2526481.8866666667
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | chi2: 0.8111736251267068
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | current chi2=0.8111736251267068 (change=6.1573799005165295 %)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,336 | INFO     | left removable region: 10
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | sum of square deviations: 925904541.7500001
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | sum of deviations: -7040230268.791674
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | mean x (centered): 0.0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | mean y: 2541784.534722222
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | intersect: 2541784.534722222
[2026-04-18 17:29:33] 2026-04-18 21:28:58,337 | INFO     | chi2: 0.027818343790028354
[2026-04-18 17:29:33] 2026-04-18 21:28:58,338 | INFO     | current memory leak: -7.60 B/s (using 144 data points, chi2=0.03)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,348 | INFO     | could have reported an average CPU frequency of 3289 MHz (9 samples)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,348 | INFO     | ..............................
[2026-04-18 17:29:33] 2026-04-18 21:28:58,348 | INFO     | . Timing measurements:
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . get job = 0 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . initial setup = 3 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . payload setup = 24 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . stage-in = 0 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . payload execution = 9742 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . stage-out = 2 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | . log creation = 0 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,349 | INFO     | ..............................
[2026-04-18 17:29:33] 2026-04-18 21:28:58,591 | INFO     | 
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | job summary report
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | --------------------------------------------------
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | PanDA job id: 7088674396
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | task id: 49263191
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | errors: (none)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | pilot state: finished 
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | transexitcode: 0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | exeerrorcode: 0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | exeerrordiag: 
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | exitcode: 0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | exitmsg: OK
[2026-04-18 17:29:33] 2026-04-18 21:28:58,592 | INFO     | cpuconsumptiontime: 32043 s
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | nevents: 400
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | neventsw: 0
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | pid: 2960219
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | pgrp: 2960219
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | corecount: 8
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | event service: False
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | sizes: {0: 2280984, 1: 2281669, 2: 2283498, 12: 2283498, 9771: 2312182, 9775: 2321180, 9777: 2321364, 9778: 2321622}
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | --------------------------------------------------
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | 
[2026-04-18 17:29:33] 2026-04-18 21:28:58,593 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 17:29:33] 2026-04-18 21:28:58,876 | INFO     | job 7088674396 has completed (purged errors)
[2026-04-18 17:29:33] 2026-04-18 21:28:58,877 | INFO     | overall cleanup function is called
[2026-04-18 17:29:33] 2026-04-18 21:28:59,890 | INFO     | --- collectZombieJob: --- 10, [2960219]
[2026-04-18 17:29:33] 2026-04-18 21:28:59,890 | INFO     | zombie collector waiting for pid 2960219
[2026-04-18 17:29:33] 2026-04-18 21:28:59,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 17:29:33] 2026-04-18 21:28:59,890 | INFO     | collected zombie processes
[2026-04-18 17:29:33] 2026-04-18 21:28:59,890 | INFO     | will attempt to kill all subprocesses of pid=2960219
[2026-04-18 17:29:33] 2026-04-18 21:29:00,716 | INFO     | process IDs to be killed: [2960219] (in reverse order)
[2026-04-18 17:29:33] 2026-04-18 21:29:01,603 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 17:29:33] 2026-04-18 21:29:01,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 17:29:33] 2026-04-18 21:29:01,622 | INFO     | did not find any defunct processes belonging to 2960219
[2026-04-18 17:29:33] 2026-04-18 21:29:01,640 | INFO     | did not find any defunct processes belonging to 2960219
[2026-04-18 17:29:33] 2026-04-18 21:29:01,641 | INFO     | Ready for new job
[2026-04-18 17:29:33] 2026-04-18 21:29:01,644 | INFO     | **************************************
[2026-04-18 17:29:33] 2026-04-18 21:29:01,644 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 17:29:33] 2026-04-18 21:29:01,644 | INFO     | **************************************
[2026-04-18 17:29:33] 2026-04-18 21:29:01,644 | INFO     | 
[2026-04-18 17:29:33] 2026-04-18 21:29:01,658 | INFO     | architecture information:
[2026-04-18 17:29:33] 2026-04-18 21:29:01,663 | INFO     | executing command: cat /etc/os-release
[2026-04-18 17:29:33] 2026-04-18 21:29:01,709 | INFO     | cat /etc/os-release:
[2026-04-18 17:29:33] NAME="CentOS Linux"
[2026-04-18 17:29:33] VERSION="7 (Core)"
[2026-04-18 17:29:33] ID="centos"
[2026-04-18 17:29:33] ID_LIKE="rhel fedora"
[2026-04-18 17:29:33] VERSION_ID="7"
[2026-04-18 17:29:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 17:29:33] ANSI_COLOR="0;31"
[2026-04-18 17:29:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 17:29:33] HOME_URL="https://www.centos.org/"
[2026-04-18 17:29:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 17:29:33] 
[2026-04-18 17:29:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 17:29:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 17:29:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 17:29:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 17:29:33] 
[2026-04-18 17:29:33] 2026-04-18 21:29:01,710 | INFO     | **************************************
[2026-04-18 17:29:33] 2026-04-18 21:29:02,213 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-18 17:29:33] 2026-04-18 21:29:02,318 | INFO     | sufficient remaining disk space (82872107008 B)
[2026-04-18 17:29:33] 2026-04-18 21:29:02,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 17:29:33] 2026-04-18 21:29:02,318 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 17:29:33] 2026-04-18 21:29:02,318 | INFO     | update_server=False
[2026-04-18 17:29:33] 2026-04-18 21:29:02,318 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 17:29:33] 2026-04-18 21:29:02,319 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 17:29:33] 2026-04-18 21:29:02,997 | INFO     | all payload control threads have been joined
[2026-04-18 17:29:33] 2026-04-18 21:29:03,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 17:29:33] 2026-04-18 21:29:03,156 | INFO     | aborting loop
[2026-04-18 17:29:33] 2026-04-18 21:29:03,304 | INFO     | all data control threads have been joined
[2026-04-18 17:29:33] 2026-04-18 21:29:03,324 | INFO     | [job] retrieve thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:03,590 | INFO     | [payload] failed_post thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:03,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 17:29:33] 2026-04-18 21:29:03,622 | INFO     | [job] validate thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:03,623 | INFO     | [data] copytool_in thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:03,928 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:03,935 | INFO     | all job control threads have been joined
[2026-04-18 17:29:33] 2026-04-18 21:29:04,003 | INFO     | [payload] control thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,080 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,081 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,081 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 17:29:33] 2026-04-18 21:29:04,162 | INFO     | [job] job monitor thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,310 | INFO     | [data] control thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,325 | INFO     | [data] copytool_out thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,620 | INFO     | [job] queue monitor thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,733 | INFO     | [payload] validate_post thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:04,941 | INFO     | [job] control thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:05,533 | INFO     | [monitor] cgroup control has ended
[2026-04-18 17:29:33] 2026-04-18 21:29:08,118 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 17:29:33] 2026-04-18 21:29:09,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702159021888)>', '<ExcThread(monitor, started 140701408929536)>']
[2026-04-18 17:29:33] 2026-04-18 21:29:14,784 | INFO     | all workflow threads have been joined
[2026-04-18 17:29:33] 2026-04-18 21:29:14,784 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 17:29:33] 2026-04-18 21:29:14,784 | INFO     | traces error code: 0
[2026-04-18 17:29:33] 2026-04-18 21:29:14,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 17:29:33] 2026-04-18 21:29:31,440 | INFO     | PID=2947184 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | INFO     | .. there are 19 such processes running
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 17:29:33] 2026-04-18 21:29:31,441 | INFO     | [monitor] control thread has ended
[2026-04-18 17:29:33] 2026-04-18 21:29:31,887 [wrapper] ==== pilot stdout END ====
[2026-04-18 17:29:33] 2026-04-18 21:29:31,929 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 17:29:33] 2026-04-18 21:29:31,953 [wrapper] pilotpid: 2947184
[2026-04-18 17:29:33] 2026-04-18 21:29:32,001 [wrapper] Pilot exit status: 0
[2026-04-18 17:29:33] 2026-04-18 21:29:32,159 [wrapper] pandaids: 7088674396 7088674396
[2026-04-18 17:29:33] 2026-04-18 21:29:32,476 [wrapper] cleanup supervisor_pilot 3914787 2947185
[2026-04-18 17:29:33] 2026-04-18 21:29:32,559 [wrapper] Test setup, not cleaning
[2026-04-18 17:29:33] 2026-04-18 21:29:32,598 [wrapper] apfmon messages muted
[2026-04-18 17:29:33] 2026-04-18 21:29:32,654 [wrapper] ==== wrapper stdout END ====
[2026-04-18 17:29:33] 2026-04-18 21:29:32,723 [wrapper] ==== wrapper stderr END ====
[2026-04-18 17:29:33]  *** Error codes and diagnostics ***
[2026-04-18 17:29:33]     "exeErrorCode": 0,
[2026-04-18 17:29:33]     "pilotErrorCode": 0,
[2026-04-18 17:29:33]  *** Listing of results directory ***
[2026-04-18 17:29:33] total 638184
[2026-04-18 17:29:33] drwx------. 5 boincer umatlas      4096 Apr  1 08:07 pilot3
[2026-04-18 17:29:33] -rwx------. 1 boincer umatlas     36322 Apr 18 05:48 runpilot2-wrapper.sh
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas    644190 Apr 18 06:05 pilot3.tar.gz
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas      5094 Apr 18 06:05 queuedata.json
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas       100 Apr 18 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 17:29:33] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 18 11:33 run_atlas
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas       105 Apr 18 11:33 job.xml
[2026-04-18 17:29:33] -rw-r--r--. 3 boincer umatlas 224929096 Apr 18 11:33 EVNT.49263189._001676.pool.root.1
[2026-04-18 17:29:33] -rw-r--r--. 3 boincer umatlas 224929096 Apr 18 11:33 ATLAS.root_0
[2026-04-18 17:29:33] -rw-r--r--. 2 boincer umatlas     15665 Apr 18 11:33 start_atlas.sh
[2026-04-18 17:29:33] drwxrwx--x. 2 boincer umatlas      4096 Apr 18 11:33 shared
[2026-04-18 17:29:33] -rw-r--r--. 2 boincer umatlas    656930 Apr 18 11:33 input.tar.gz
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas         0 Apr 18 11:33 boinc_lockfile
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas      2578 Apr 18 14:45 pandaJob.out
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas        57 Apr 18 14:45 setup.sh.local
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas    997676 Apr 18 14:45 agis_schedconf.cvmfs.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas   1512404 Apr 18 14:45 agis_ddmendpoints.agis.ALL.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas       430 Apr 18 14:45 workernode_map.json
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas      6820 Apr 18 17:21 init_data.xml
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas 197137392 Apr 18 17:27 HITS.49263191._062985.pool.root.1
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas       488 Apr 18 17:27 boinc_task_state.xml
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas      1062 Apr 18 17:28 memory_monitor_summary.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas        96 Apr 18 17:28 pilot_heartbeat.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas    354452 Apr 18 17:28 log.49263191._062985.job.log.tgz.1
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas      6376 Apr 18 17:28 heartbeat_new.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas      6267 Apr 18 17:28 heartbeat.json
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas       823 Apr 18 17:29 pilotlog.txt
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas    866872 Apr 18 17:29 log.49263191._062985.job.log.1
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas      8192 Apr 18 17:29 boinc_mmap_file
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas       357 Apr 18 17:29 output.list
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas       410 Apr 18 17:29 runtime_log
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas   1239040 Apr 18 17:29 result.tar.gz
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas        28 Apr 18 17:29 wrapper_checkpoint.txt
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas      9048 Apr 18 17:29 runtime_log.err
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas       781 Apr 18 17:29 535f80423176.diag
[2026-04-18 17:29:33] -rw-r--r--. 1 boincer umatlas     23404 Apr 18 17:29 stderr.txt
[2026-04-18 17:29:33] HITS file was successfully produced:
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas 197137392 Apr 18 17:27 shared/HITS.pool.root.1
[2026-04-18 17:29:33]  *** Contents of shared directory: ***
[2026-04-18 17:29:33] total 414056
[2026-04-18 17:29:33] -rw-r--r--. 3 boincer umatlas 224929096 Apr 18 11:33 ATLAS.root_0
[2026-04-18 17:29:33] -rw-r--r--. 2 boincer umatlas     15665 Apr 18 11:33 start_atlas.sh
[2026-04-18 17:29:33] -rw-r--r--. 2 boincer umatlas    656930 Apr 18 11:33 input.tar.gz
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas 197137392 Apr 18 17:27 HITS.pool.root.1
[2026-04-18 17:29:33] -rw-------. 1 boincer umatlas   1239040 Apr 18 17:29 result.tar.gz
17:29:35 (2932066): run_atlas exited; CPU time 32270.560506
17:29:35 (2932066): called boinc_finish(0)

</stderr_txt>
]]>

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