Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:53:52 (999479): wrapper (7.7.26015): starting
04:53:52 (999479): wrapper: running run_atlas (--nthreads 4)
[2026-04-19 04:53:52] Arguments: --nthreads 4
[2026-04-19 04:53:52] Threads: 4
[2026-04-19 04:53:52] Checking for CVMFS
[2026-04-19 04:53:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 04:53:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 04:53:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 04:53:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 04:53:53] 2.9.2.0 745507 1382 86000 158605 0 50 34211039 36864001 0 130560 0 987005 99.988 54745 12602 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-19 04:53:53] CVMFS is ok
[2026-04-19 04:53:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 04:53:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 04:53:53] Further information can be found at the LHC@home message board.
[2026-04-19 04:53:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 04:53:53] Checking for apptainer binary...
[2026-04-19 04:53:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 04:53:53] Running /usr/bin/apptainer --version
[2026-04-19 04:53:53] apptainer version 1.4.1-1.1
[2026-04-19 04:53:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 04:53:53] cosA131
[2026-04-19 04:53:53] apptainer works
[2026-04-19 04:53:53] Set ATHENA_PROC_NUMBER=4
[2026-04-19 04:53:53] Set ATHENA_CORE_NUMBER=4
[2026-04-19 04:53:53] Starting ATLAS job with PandaID=7101002608
[2026-04-19 04:53:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 06:59:26]  *** The last 200 lines of the pilot log: ***
[2026-04-19 06:59:26] 2026-04-19 04:58:55,936 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7101002608/payload.stdout) since it has not been created yet
[2026-04-19 06:59:26] 2026-04-19 04:58:55,936 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 06:59:26] 2026-04-19 04:58:55,951 | INFO     | sufficient remaining disk space (314820263936 B)
[2026-04-19 06:59:26] 2026-04-19 04:58:55,951 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-19 06:59:26] 2026-04-19 04:58:55,951 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7101002608/HITS.49820244._000649.pool.root.1 since it does not exist
[2026-04-19 06:59:26] 2026-04-19 04:58:55,989 | INFO     | number of running child processes to parent process 1008097: 1
[2026-04-19 06:59:26] 2026-04-19 04:58:55,990 | INFO     | maximum number of monitored processes: 6
[2026-04-19 06:59:26] 2026-04-19 04:58:55,990 | INFO     | aborting job monitoring since job object (job id=7101002608) has expired
[2026-04-19 06:59:26] 2026-04-19 04:58:56,148 | INFO     | --- collectZombieJob: --- 10, [1008097]
[2026-04-19 06:59:26] 2026-04-19 04:58:56,148 | INFO     | zombie collector waiting for pid 1008097
[2026-04-19 06:59:26] 2026-04-19 04:58:56,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 06:59:26] 2026-04-19 04:58:56,148 | INFO     | collected zombie processes
[2026-04-19 06:59:26] 2026-04-19 04:58:56,148 | INFO     | will attempt to kill all subprocesses of pid=1008097
[2026-04-19 06:59:26] 2026-04-19 04:58:56,188 | INFO     | process IDs to be killed: [1008097] (in reverse order)
[2026-04-19 06:59:26] 2026-04-19 04:58:56,221 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 06:59:26] 2026-04-19 04:58:56,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 06:59:26] 2026-04-19 04:58:56,224 | INFO     | did not find any defunct processes belonging to 1008097
[2026-04-19 06:59:26] 2026-04-19 04:58:56,225 | INFO     | did not find any defunct processes belonging to 1008097
[2026-04-19 06:59:26] 2026-04-19 04:58:56,225 | INFO     | Ready for new job
[2026-04-19 06:59:26] 2026-04-19 04:58:56,225 | INFO     | **************************************
[2026-04-19 06:59:26] 2026-04-19 04:58:56,226 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 06:59:26] 2026-04-19 04:58:56,226 | INFO     | **************************************
[2026-04-19 06:59:26] 2026-04-19 04:58:56,226 | INFO     | 
[2026-04-19 06:59:26] 2026-04-19 04:58:56,226 | INFO     | architecture information:
[2026-04-19 06:59:26] 2026-04-19 04:58:56,226 | INFO     | executing command: cat /etc/os-release
[2026-04-19 06:59:26] 2026-04-19 04:58:56,241 | INFO     | cat /etc/os-release:
[2026-04-19 06:59:26] NAME="CentOS Linux"
[2026-04-19 06:59:26] VERSION="7 (Core)"
[2026-04-19 06:59:26] ID="centos"
[2026-04-19 06:59:26] ID_LIKE="rhel fedora"
[2026-04-19 06:59:26] VERSION_ID="7"
[2026-04-19 06:59:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 06:59:26] ANSI_COLOR="0;31"
[2026-04-19 06:59:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 06:59:26] HOME_URL="https://www.centos.org/"
[2026-04-19 06:59:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 06:59:26] 
[2026-04-19 06:59:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 06:59:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 06:59:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 06:59:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 06:59:26] 
[2026-04-19 06:59:26] 2026-04-19 04:58:56,241 | INFO     | **************************************
[2026-04-19 06:59:26] 2026-04-19 04:58:56,745 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 06:59:26] 2026-04-19 04:58:56,763 | INFO     | sufficient remaining disk space (314821312512 B)
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | INFO     | update_server=False
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 06:59:26] 2026-04-19 04:58:56,764 | INFO     | will abort loop
[2026-04-19 06:59:26] 2026-04-19 04:58:57,310 | INFO     | all data control threads have been joined
[2026-04-19 06:59:26] 2026-04-19 04:58:57,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 06:59:26] 2026-04-19 04:58:57,770 | INFO     | [job] retrieve thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:57,770 | INFO     | [job] queue monitor thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:57,770 | INFO     | [job] job monitor thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:57,908 | INFO     | all payload control threads have been joined
[2026-04-19 06:59:26] 2026-04-19 04:58:58,178 | INFO     | all job control threads have been joined
[2026-04-19 06:59:26] 2026-04-19 04:58:58,224 | INFO     | [payload] validate_post thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:58,316 | INFO     | [data] control thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:58,841 | INFO     | [job] validate thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:58,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 06:59:26] 2026-04-19 04:58:58,914 | INFO     | [payload] control thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:58,989 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,038 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,103 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,116 | INFO     | [data] copytool_in thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,184 | INFO     | [job] control thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,294 | INFO     | [payload] failed_post thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:58:59,659 | INFO     | [data] copytool_out thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:59:02,906 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:59:06,938 | INFO     | job.realtimelogging is not enabled
[2026-04-19 06:59:26] 2026-04-19 04:59:07,943 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 06:59:26] 2026-04-19 04:59:16,096 | INFO     | [monitor] cgroup control has ended
[2026-04-19 06:59:26] 2026-04-19 04:59:17,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216183408448)>', '<ExcThread(monitor, started 140215205209856)>']
[2026-04-19 06:59:26] 2026-04-19 04:59:22,739 | INFO     | all workflow threads have been joined
[2026-04-19 06:59:26] 2026-04-19 04:59:22,740 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 06:59:26] 2026-04-19 04:59:22,741 | INFO     | traces error code: 0
[2026-04-19 06:59:26] 2026-04-19 04:59:22,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 06:59:26] 2026-04-19 04:59:26,575 | INFO     | PID=1003591 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | CRITICAL | thread 'MainThread' is not alive
[2026-04-19 06:59:26] 2026-04-19 04:59:26,576 | INFO     | [monitor] control thread has ended
[2026-04-19 06:59:26] 2026-04-19 04:59:26,651 [wrapper] ==== pilot stdout END ====
[2026-04-19 06:59:26] 2026-04-19 04:59:26,656 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 06:59:26] 2026-04-19 04:59:26,660 [wrapper] pilotpid: 1003591
[2026-04-19 06:59:26] 2026-04-19 04:59:26,664 [wrapper] Pilot exit status: 0
[2026-04-19 06:59:26] 2026-04-19 04:59:26,676 [wrapper] pandaids: 7101002608
[2026-04-19 06:59:26] 2026-04-19 04:59:26,699 [wrapper] cleanup supervisor_pilot 1013857 1003592
[2026-04-19 06:59:26] 2026-04-19 04:59:26,703 [wrapper] Test setup, not cleaning
[2026-04-19 06:59:26] 2026-04-19 04:59:26,708 [wrapper] apfmon messages muted
[2026-04-19 06:59:26] 2026-04-19 04:59:26,712 [wrapper] ==== wrapper stdout END ====
[2026-04-19 06:59:26] 2026-04-19 04:59:26,716 [wrapper] ==== wrapper stderr END ====
[2026-04-19 06:59:26]  *** Error codes and diagnostics ***
[2026-04-19 06:59:26]     "exeErrorCode": 0,
[2026-04-19 06:59:26]     "pilotErrorCode": 0,
[2026-04-19 06:59:26]  *** Listing of results directory ***
[2026-04-19 06:59:26] total 2455576
[2026-04-19 06:59:26] -rwx------ 1 boinc boinc      36322 Apr 18 14:36 runpilot2-wrapper.sh
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc     644190 Apr 18 14:50 pilot3.tar.gz
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc       5094 Apr 18 14:54 queuedata.json
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc        100 Apr 19 04:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 06:59:26] -rwxr-xr-x 1 boinc boinc       7986 Apr 19 04:53 run_atlas
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc        105 Apr 19 04:53 job.xml
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc 2231339943 Apr 19 04:53 EVNT.49820242._000005.pool.root.1
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc     656908 Apr 19 04:53 input.tar.gz
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc      15665 Apr 19 04:53 start_atlas.sh
[2026-04-19 06:59:26] drwxrwx--x 2 boinc boinc       4096 Apr 19 04:53 shared
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc          0 Apr 19 04:53 boinc_setup_complete
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc       6293 Apr 19 04:53 init_data.xml
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc          0 Apr 19 04:53 boinc_lockfile
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc       2548 Apr 19 04:53 pandaJob.out
[2026-04-19 06:59:26] -rw------- 1 boinc boinc     997673 Apr 19 04:54 agis_schedconf.cvmfs.json
[2026-04-19 06:59:26] -rw------- 1 boinc boinc    1512404 Apr 19 04:54 agis_ddmendpoints.agis.ALL.json
[2026-04-19 06:59:26] -rw------- 1 boinc boinc        422 Apr 19 04:54 workernode_map.json
[2026-04-19 06:59:26] drwx------ 5 boinc boinc       4096 Apr 19 04:54 pilot3
[2026-04-19 06:59:26] -rw------- 1 boinc boinc  276910226 Apr 19 06:58 HITS.49820244._000649.pool.root.1
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc        488 Apr 19 06:58 boinc_task_state.xml
[2026-04-19 06:59:26] -rw------- 1 boinc boinc         95 Apr 19 06:58 pilot_heartbeat.json
[2026-04-19 06:59:26] -rw------- 1 boinc boinc       1021 Apr 19 06:58 memory_monitor_summary.json
[2026-04-19 06:59:26] -rw------- 1 boinc boinc     396037 Apr 19 06:58 log.49820244._000649.job.log.tgz.1
[2026-04-19 06:59:26] -rw------- 1 boinc boinc       6325 Apr 19 06:58 heartbeat_new.json
[2026-04-19 06:59:26] -rw------- 1 boinc boinc       6216 Apr 19 06:58 heartbeat.json
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc       8192 Apr 19 06:59 boinc_mmap_file
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc         27 Apr 19 06:59 wrapper_checkpoint.txt
[2026-04-19 06:59:26] -rw------- 1 boinc boinc        817 Apr 19 06:59 pilotlog.txt
[2026-04-19 06:59:26] -rw------- 1 boinc boinc     712431 Apr 19 06:59 log.49820244._000649.job.log.1
[2026-04-19 06:59:26] -rw------- 1 boinc boinc        357 Apr 19 06:59 output.list
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc        410 Apr 19 06:59 runtime_log
[2026-04-19 06:59:26] -rw------- 1 boinc boinc    1126400 Apr 19 06:59 result.tar.gz
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc       8523 Apr 19 06:59 runtime_log.err
[2026-04-19 06:59:26] -rw------- 1 boinc boinc        659 Apr 19 06:59 7ad8f881e6cd.diag
[2026-04-19 06:59:26] -rw-r--r-- 1 boinc boinc      11693 Apr 19 06:59 stderr.txt
[2026-04-19 06:59:26] HITS file was successfully produced:
[2026-04-19 06:59:26] -rw------- 1 boinc boinc 276910226 Apr 19 06:58 shared/HITS.pool.root.1
[2026-04-19 06:59:26]  *** Contents of shared directory: ***
[2026-04-19 06:59:26] total 2451236
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc 2231339943 Apr 19 04:53 ATLAS.root_0
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc     656908 Apr 19 04:53 input.tar.gz
[2026-04-19 06:59:26] -rw-r--r-- 2 boinc boinc      15665 Apr 19 04:53 start_atlas.sh
[2026-04-19 06:59:26] -rw------- 1 boinc boinc  276910226 Apr 19 06:58 HITS.pool.root.1
[2026-04-19 06:59:26] -rw------- 1 boinc boinc    1126400 Apr 19 06:59 result.tar.gz
06:59:27 (999479): run_atlas exited; CPU time 28317.454840
06:59:27 (999479): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN