Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:35:39 (971113): wrapper (7.7.26015): starting
01:35:39 (971113): wrapper: running run_atlas (--nthreads 4)
[2026-04-19 01:35:39] Arguments: --nthreads 4
[2026-04-19 01:35:39] Threads: 4
[2026-04-19 01:35:39] Checking for CVMFS
[2026-04-19 01:35:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-19 01:35:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-19 01:35:40] Running cvmfs_config stat atlas.cern.ch
[2026-04-19 01:35:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-19 01:35:40] 2.9.2.0 745507 1184 84440 158601 2 50 34194564 36864001 0 130560 0 876591 99.987 49518 11886 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-19 01:35:40] CVMFS is ok
[2026-04-19 01:35:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-19 01:35:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-19 01:35:40] Further information can be found at the LHC@home message board.
[2026-04-19 01:35:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-19 01:35:40] Checking for apptainer binary...
[2026-04-19 01:35:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-19 01:35:40] Running /usr/bin/apptainer --version
[2026-04-19 01:35:40] apptainer version 1.4.1-1.1
[2026-04-19 01:35:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-19 01:35:40] cosA131
[2026-04-19 01:35:40] apptainer works
[2026-04-19 01:35:40] Set ATHENA_PROC_NUMBER=4
[2026-04-19 01:35:40] Set ATHENA_CORE_NUMBER=4
[2026-04-19 01:35:40] Starting ATLAS job with PandaID=7090666183
[2026-04-19 01:35:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 02:49:05]  *** The last 200 lines of the pilot log: ***
[2026-04-19 02:49:05] 2026-04-19 00:48:47,819 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 02:49:05] 2026-04-19 00:48:47,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 02:49:05] 2026-04-19 00:48:47,821 | INFO     | did not find any defunct processes belonging to 979746
[2026-04-19 02:49:05] 2026-04-19 00:48:47,822 | INFO     | did not find any defunct processes belonging to 979746
[2026-04-19 02:49:05] 2026-04-19 00:48:47,822 | INFO     | Ready for new job
[2026-04-19 02:49:05] 2026-04-19 00:48:47,823 | INFO     | **************************************
[2026-04-19 02:49:05] 2026-04-19 00:48:47,823 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 02:49:05] 2026-04-19 00:48:47,823 | INFO     | **************************************
[2026-04-19 02:49:05] 2026-04-19 00:48:47,823 | INFO     | 
[2026-04-19 02:49:05] 2026-04-19 00:48:47,823 | INFO     | architecture information:
[2026-04-19 02:49:05] 2026-04-19 00:48:47,824 | INFO     | executing command: cat /etc/os-release
[2026-04-19 02:49:05] 2026-04-19 00:48:47,838 | INFO     | cat /etc/os-release:
[2026-04-19 02:49:05] NAME="CentOS Linux"
[2026-04-19 02:49:05] VERSION="7 (Core)"
[2026-04-19 02:49:05] ID="centos"
[2026-04-19 02:49:05] ID_LIKE="rhel fedora"
[2026-04-19 02:49:05] VERSION_ID="7"
[2026-04-19 02:49:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 02:49:05] ANSI_COLOR="0;31"
[2026-04-19 02:49:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 02:49:05] HOME_URL="https://www.centos.org/"
[2026-04-19 02:49:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 02:49:05] 
[2026-04-19 02:49:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 02:49:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 02:49:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 02:49:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 02:49:05] 
[2026-04-19 02:49:05] 2026-04-19 00:48:47,838 | INFO     | **************************************
[2026-04-19 02:49:05] 2026-04-19 00:48:48,342 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-19 02:49:05] 2026-04-19 00:48:48,360 | INFO     | sufficient remaining disk space (317405003776 B)
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | INFO     | update_server=False
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 02:49:05] 2026-04-19 00:48:48,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 02:49:05] 2026-04-19 00:48:48,668 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-19 02:49:05] 2026-04-19 00:48:48,668 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-19 02:49:05] 2026-04-19 00:48:48,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 02:49:05] 2026-04-19 00:48:48,668 | INFO     | will abort loop
[2026-04-19 02:49:05] 2026-04-19 00:48:48,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 02:49:05] 2026-04-19 00:48:49,046 | INFO     | all payload control threads have been joined
[2026-04-19 02:49:05] 2026-04-19 00:48:49,284 | INFO     | all data control threads have been joined
[2026-04-19 02:49:05] 2026-04-19 00:48:49,367 | INFO     | [job] retrieve thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,367 | INFO     | [job] queue monitor thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,390 | INFO     | [payload] validate_post thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,426 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,585 | INFO     | [payload] failed_post thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,587 | INFO     | all job control threads have been joined
[2026-04-19 02:49:05] 2026-04-19 00:48:49,598 | INFO     | [data] copytool_in thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,674 | INFO     | [job] job monitor thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:49,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 02:49:05] 2026-04-19 00:48:50,050 | INFO     | [payload] control thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,290 | INFO     | [data] control thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,361 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,593 | INFO     | [job] control thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,779 | INFO     | [job] validate thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,779 | INFO     | [data] copytool_out thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:50,865 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:53,848 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:58,279 | INFO     | [monitor] cgroup control has ended
[2026-04-19 02:49:05] 2026-04-19 00:48:58,415 | INFO     | job.realtimelogging is not enabled
[2026-04-19 02:49:05] 2026-04-19 00:48:59,421 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 02:49:05] 2026-04-19 00:48:59,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071728875328)>', '<ExcThread(monitor, started 140070493353728)>']
[2026-04-19 02:49:05] 2026-04-19 00:49:00,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 02:49:05] 2026-04-19 00:49:00,426 | INFO     | [monitor] control thread has ended
[2026-04-19 02:49:05] 2026-04-19 00:49:04,922 | INFO     | all workflow threads have been joined
[2026-04-19 02:49:05] 2026-04-19 00:49:04,922 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 02:49:05] 2026-04-19 00:49:04,923 | INFO     | traces error code: 0
[2026-04-19 02:49:05] 2026-04-19 00:49:04,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 02:49:05] 2026-04-19 00:49:05,002 [wrapper] ==== pilot stdout END ====
[2026-04-19 02:49:05] 2026-04-19 00:49:05,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 02:49:05] 2026-04-19 00:49:05,010 [wrapper] pilotpid: 975232
[2026-04-19 02:49:05] 2026-04-19 00:49:05,015 [wrapper] Pilot exit status: 0
[2026-04-19 02:49:05] 2026-04-19 00:49:05,027 [wrapper] pandaids: 7090666183
[2026-04-19 02:49:05] 2026-04-19 00:49:05,048 [wrapper] cleanup supervisor_pilot  984762 975233
[2026-04-19 02:49:05] 2026-04-19 00:49:05,052 [wrapper] Test setup, not cleaning
[2026-04-19 02:49:05] 2026-04-19 00:49:05,056 [wrapper] apfmon messages muted
[2026-04-19 02:49:05] 2026-04-19 00:49:05,060 [wrapper] ==== wrapper stdout END ====
[2026-04-19 02:49:05] 2026-04-19 00:49:05,064 [wrapper] ==== wrapper stderr END ====
[2026-04-19 02:49:05]  *** Error codes and diagnostics ***
[2026-04-19 02:49:05]     "exeErrorCode": 0,
[2026-04-19 02:49:05]     "pilotErrorCode": 0,
[2026-04-19 02:49:05]  *** Listing of results directory ***
[2026-04-19 02:49:05] total 411732
[2026-04-19 02:49:05] -rwx------ 1 boinc boinc     36322 Apr 18 12:45 runpilot2-wrapper.sh
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc    644190 Apr 18 12:46 pilot3.tar.gz
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      5094 Apr 18 12:49 queuedata.json
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc       100 Apr 19 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 02:49:05] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 01:35 run_atlas
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc       105 Apr 19 01:35 job.xml
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc 223732447 Apr 19 01:35 EVNT.49263198._001141.pool.root.1
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc    656932 Apr 19 01:35 input.tar.gz
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc     15665 Apr 19 01:35 start_atlas.sh
[2026-04-19 02:49:05] drwxrwx--x 2 boinc boinc      4096 Apr 19 01:35 shared
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc         0 Apr 19 01:35 boinc_setup_complete
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      6293 Apr 19 01:35 init_data.xml
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc         0 Apr 19 01:35 boinc_lockfile
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      2576 Apr 19 01:35 pandaJob.out
[2026-04-19 02:49:05] -rw------- 1 boinc boinc    998031 Apr 19 01:35 agis_schedconf.cvmfs.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc   1512404 Apr 19 01:35 agis_ddmendpoints.agis.ALL.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc       428 Apr 19 01:35 workernode_map.json
[2026-04-19 02:49:05] drwx------ 5 boinc boinc      4096 Apr 19 01:35 pilot3
[2026-04-19 02:49:05] -rw------- 1 boinc boinc        95 Apr 19 02:48 pilot_heartbeat.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc 192478105 Apr 19 02:48 HITS.49263200._069055.pool.root.1
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc       487 Apr 19 02:48 boinc_task_state.xml
[2026-04-19 02:49:05] -rw------- 1 boinc boinc      1015 Apr 19 02:48 memory_monitor_summary.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc    239342 Apr 19 02:48 log.49263200._069055.job.log.tgz.1
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      8192 Apr 19 02:48 boinc_mmap_file
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc        27 Apr 19 02:48 wrapper_checkpoint.txt
[2026-04-19 02:49:05] -rw------- 1 boinc boinc      6334 Apr 19 02:48 heartbeat_new.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc      6225 Apr 19 02:48 heartbeat.json
[2026-04-19 02:49:05] -rw------- 1 boinc boinc      4809 Apr 19 02:49 pilotlog.txt
[2026-04-19 02:49:05] -rw------- 1 boinc boinc    434239 Apr 19 02:49 log.49263200._069055.job.log.1
[2026-04-19 02:49:05] -rw------- 1 boinc boinc       357 Apr 19 02:49 output.list
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc       410 Apr 19 02:49 runtime_log
[2026-04-19 02:49:05] -rw------- 1 boinc boinc    696320 Apr 19 02:49 result.tar.gz
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      8523 Apr 19 02:49 runtime_log.err
[2026-04-19 02:49:05] -rw------- 1 boinc boinc       658 Apr 19 02:49 60cd931b04ca.diag
[2026-04-19 02:49:05] -rw-r--r-- 1 boinc boinc      9988 Apr 19 02:49 stderr.txt
[2026-04-19 02:49:05] HITS file was successfully produced:
[2026-04-19 02:49:05] -rw------- 1 boinc boinc 192478105 Apr 19 02:48 shared/HITS.pool.root.1
[2026-04-19 02:49:05]  *** Contents of shared directory: ***
[2026-04-19 02:49:05] total 407808
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc 223732447 Apr 19 01:35 ATLAS.root_0
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc    656932 Apr 19 01:35 input.tar.gz
[2026-04-19 02:49:05] -rw-r--r-- 2 boinc boinc     15665 Apr 19 01:35 start_atlas.sh
[2026-04-19 02:49:05] -rw------- 1 boinc boinc 192478105 Apr 19 02:48 HITS.pool.root.1
[2026-04-19 02:49:05] -rw------- 1 boinc boinc    696320 Apr 19 02:49 result.tar.gz
02:49:06 (971113): run_atlas exited; CPU time 16061.032217
02:49:06 (971113): called boinc_finish(0)

</stderr_txt>
]]>

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