Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:24:31 (3219367): wrapper (7.7.26015): starting
03:24:31 (3219367): wrapper: running run_atlas (--nthreads 4)
[2026-04-21 03:24:31] Arguments: --nthreads 4
[2026-04-21 03:24:31] Threads: 4
[2026-04-21 03:24:31] Checking for CVMFS
[2026-04-21 03:24:31] No cvmfs_config command found, will try listing directly
[2026-04-21 03:24:31] CVMFS is ok
[2026-04-21 03:24:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-21 03:24:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-21 03:24:31] Further information can be found at the LHC@home message board.
[2026-04-21 03:24:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-21 03:24:31] Checking for apptainer binary...
[2026-04-21 03:24:31] which: no apptainer in ((null))
[2026-04-21 03:24:31] apptainer is not installed, using version from CVMFS
[2026-04-21 03:24:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-21 03:24:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-21 03:24:31] apptainer works
[2026-04-21 03:24:31] Set ATHENA_PROC_NUMBER=4
[2026-04-21 03:24:31] Set ATHENA_CORE_NUMBER=4
[2026-04-21 03:24:31] Starting ATLAS job with PandaID=7090675509
[2026-04-21 03:24:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-21 05:42:12]  *** The last 200 lines of the pilot log: ***
[2026-04-21 05:42:12] 2026-04-21 03:41:19,190 | INFO     | job 7090675509 has state=finished
[2026-04-21 05:42:12] 2026-04-21 03:41:19,190 | INFO     | preparing for final server update for job 7090675509 in state='finished'
[2026-04-21 05:42:12] 2026-04-21 03:41:19,191 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/4/PanDA_Pilot-7090675509/jobReport.json
[2026-04-21 05:42:12] 2026-04-21 03:41:19,193 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/4/workernode_map.json
[2026-04-21 05:42:12] 2026-04-21 03:41:19,194 | INFO     | this job has now completed (state=finished)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,194 | INFO     | log transfer has been attempted: DONE
[2026-04-21 05:42:12] 2026-04-21 03:41:19,194 | INFO     | job 7090675509 has finished - writing final server update
[2026-04-21 05:42:12] 2026-04-21 03:41:19,194 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_8956/.job.ad'
[2026-04-21 05:42:12] 2026-04-21 03:41:19,195 | INFO     | total number of processed events: 400 (read)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,218 | INFO     | using path: /var/lib/boinc/var/slot48/slots/4/PanDA_Pilot-7090675509/memory_monitor_summary.json (trf name=prmon)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,219 | INFO     | extracted standard info from prmon json
[2026-04-21 05:42:12] 2026-04-21 03:41:19,219 | INFO     | extracted standard memory fields from prmon json
[2026-04-21 05:42:12] 2026-04-21 03:41:19,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-21 05:42:12] 2026-04-21 03:41:19,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-21 05:42:12] 2026-04-21 03:41:19,222 | INFO     | fitting pss+swap vs Time
[2026-04-21 05:42:12] 2026-04-21 03:41:19,222 | INFO     | sum of square deviations: 746051197.5
[2026-04-21 05:42:12] 2026-04-21 03:41:19,223 | INFO     | sum of deviations: 10815985091.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,223 | INFO     | mean x (centered): 0.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,223 | INFO     | mean y: 2321497.313432836
[2026-04-21 05:42:12] 2026-04-21 03:41:19,224 | INFO     | intersect: 2321497.313432836
[2026-04-21 05:42:12] 2026-04-21 03:41:19,224 | INFO     | chi2: 1.2776648584234824
[2026-04-21 05:42:12] 2026-04-21 03:41:19,224 | INFO     | sum of square deviations: 665612480.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | sum of deviations: 10490194949.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | mean x (centered): 0.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | mean y: 2320879.201550388
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | intersect: 2320879.201550388
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | chi2: 1.2792847616524436
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | current chi2=1.2792847616524436 (change=-0.1267862396215565 %)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,225 | INFO     | right removable region: 128
[2026-04-21 05:42:12] 2026-04-21 03:41:19,226 | INFO     | sum of square deviations: 665612480.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,226 | INFO     | sum of deviations: -5083187889.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,226 | INFO     | mean x (centered): 0.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,226 | INFO     | mean y: 2351028.96124031
[2026-04-21 05:42:12] 2026-04-21 03:41:19,227 | INFO     | intersect: 2351028.96124031
[2026-04-21 05:42:12] 2026-04-21 03:41:19,227 | INFO     | chi2: 0.006803427363777987
[2026-04-21 05:42:12] 2026-04-21 03:41:19,227 | INFO     | current chi2=0.006803427363777987 (change=99.46751080152796 %)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,227 | INFO     | sum of square deviations: 591173875.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | sum of deviations: -4555740073.5
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | mean x (centered): 0.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | mean y: 2349946.830645161
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | intersect: 2349946.830645161
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | chi2: 0.006791706407063583
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | current chi2=0.006791706407063583 (change=0.1722801771472863 %)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | left removable region: 10
[2026-04-21 05:42:12] 2026-04-21 03:41:19,228 | INFO     | sum of square deviations: 509440249.5
[2026-04-21 05:42:12] 2026-04-21 03:41:19,229 | INFO     | sum of deviations: -4272764886.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,229 | INFO     | mean x (centered): 0.0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,229 | INFO     | mean y: 2350580.627118644
[2026-04-21 05:42:12] 2026-04-21 03:41:19,229 | INFO     | intersect: 2350580.627118644
[2026-04-21 05:42:12] 2026-04-21 03:41:19,229 | INFO     | chi2: 0.006484701259343008
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | current memory leak: -8.39 B/s (using 118 data points, chi2=0.01)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | could have reported an average CPU frequency of 2767 MHz (8 samples)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | ..............................
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . Timing measurements:
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . get job = 0 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . initial setup = 7 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . payload setup = 14 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . stage-in = 0 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,230 | INFO     | . payload execution = 8152 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,231 | INFO     | . stage-out = 0 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,231 | INFO     | . log creation = 0 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,231 | INFO     | ..............................
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | 
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | job summary report
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | --------------------------------------------------
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | PanDA job id: 7090675509
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | task id: 49263200
[2026-04-21 05:42:12] 2026-04-21 03:41:19,825 | INFO     | errors: (none)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | pilot state: finished 
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | transexitcode: 0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | exeerrorcode: 0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | exeerrordiag: 
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | exitcode: 0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | exitmsg: OK
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | cpuconsumptiontime: 31189 s
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | nevents: 400
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | neventsw: 0
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | pid: 3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | pgrp: 3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:19,826 | INFO     | corecount: 4
[2026-04-21 05:42:12] 2026-04-21 03:41:19,827 | INFO     | event service: False
[2026-04-21 05:42:12] 2026-04-21 03:41:19,827 | INFO     | sizes: {0: 2283449, 11: 2283449, 8170: 2311776, 8171: 2320796, 8174: 2320852, 8175: 2321046}
[2026-04-21 05:42:12] 2026-04-21 03:41:19,827 | INFO     | --------------------------------------------------
[2026-04-21 05:42:12] 2026-04-21 03:41:19,827 | INFO     | 
[2026-04-21 05:42:12] 2026-04-21 03:41:19,827 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/4
[2026-04-21 05:42:12] 2026-04-21 03:41:19,856 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,856 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,858 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-21 05:42:12] 2026-04-21 03:41:19,859 | INFO     | job 7090675509 has completed (purged errors)
[2026-04-21 05:42:12] 2026-04-21 03:41:19,859 | INFO     | overall cleanup function is called
[2026-04-21 05:42:12] 2026-04-21 03:41:20,477 | INFO     | PID=3227212 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-21 05:42:12] 2026-04-21 03:41:20,477 | INFO     | .. there are 15 such processes running
[2026-04-21 05:42:12] 2026-04-21 03:41:20,869 | INFO     | --- collectZombieJob: --- 10, [3240534]
[2026-04-21 05:42:12] 2026-04-21 03:41:20,869 | INFO     | zombie collector waiting for pid 3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:20,869 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-21 05:42:12] 2026-04-21 03:41:20,869 | INFO     | collected zombie processes
[2026-04-21 05:42:12] 2026-04-21 03:41:20,869 | INFO     | will attempt to kill all subprocesses of pid=3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:21,583 | INFO     | process IDs to be killed: [3240534] (in reverse order)
[2026-04-21 05:42:12] 2026-04-21 03:41:21,868 | WARNING  | found no corresponding commands to process id(s)
[2026-04-21 05:42:12] 2026-04-21 03:41:21,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-21 05:42:12] 2026-04-21 03:41:21,896 | INFO     | did not find any defunct processes belonging to 3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:21,921 | INFO     | did not find any defunct processes belonging to 3240534
[2026-04-21 05:42:12] 2026-04-21 03:41:21,921 | INFO     | Ready for new job
[2026-04-21 05:42:12] 2026-04-21 03:41:21,923 | INFO     | **************************************
[2026-04-21 05:42:12] 2026-04-21 03:41:21,923 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-21 05:42:12] 2026-04-21 03:41:21,923 | INFO     | **************************************
[2026-04-21 05:42:12] 2026-04-21 03:41:21,923 | INFO     | 
[2026-04-21 05:42:12] 2026-04-21 03:41:21,932 | INFO     | architecture information:
[2026-04-21 05:42:12] 2026-04-21 03:41:21,932 | INFO     | executing command: cat /etc/os-release
[2026-04-21 05:42:12] 2026-04-21 03:41:21,954 | INFO     | cat /etc/os-release:
[2026-04-21 05:42:12] NAME="CentOS Linux"
[2026-04-21 05:42:12] VERSION="7 (Core)"
[2026-04-21 05:42:12] ID="centos"
[2026-04-21 05:42:12] ID_LIKE="rhel fedora"
[2026-04-21 05:42:12] VERSION_ID="7"
[2026-04-21 05:42:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-21 05:42:12] ANSI_COLOR="0;31"
[2026-04-21 05:42:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-21 05:42:12] HOME_URL="https://www.centos.org/"
[2026-04-21 05:42:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-21 05:42:12] 
[2026-04-21 05:42:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-21 05:42:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-21 05:42:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-21 05:42:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-21 05:42:12] 
[2026-04-21 05:42:12] 2026-04-21 03:41:21,955 | INFO     | **************************************
[2026-04-21 05:42:12] 2026-04-21 03:41:22,458 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/4
[2026-04-21 05:42:12] 2026-04-21 03:41:22,484 | INFO     | sufficient remaining disk space (194870509568 B)
[2026-04-21 05:42:12] 2026-04-21 03:41:22,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-21 05:42:12] 2026-04-21 03:41:22,485 | INFO     | current server update state: UPDATING_FINAL
[2026-04-21 05:42:12] 2026-04-21 03:41:22,485 | INFO     | update_server=False
[2026-04-21 05:42:12] 2026-04-21 03:41:22,485 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-21 05:42:12] 2026-04-21 03:41:22,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-21 05:42:12] 2026-04-21 03:41:22,486 | INFO     | aborting loop
[2026-04-21 05:42:12] 2026-04-21 03:41:22,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-21 05:42:12] 2026-04-21 03:41:23,091 | INFO     | all data control threads have been joined
[2026-04-21 05:42:12] 2026-04-21 03:41:23,113 | INFO     | all job control threads have been joined
[2026-04-21 05:42:12] 2026-04-21 03:41:23,191 | INFO     | all payload control threads have been joined
[2026-04-21 05:42:12] 2026-04-21 03:41:23,490 | INFO     | [job] retrieve thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:23,491 | INFO     | [job] job monitor thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:23,854 | INFO     | [job] validate thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:23,860 | INFO     | [payload] execute_payloads thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,066 | INFO     | [job] create_data_payload thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,097 | INFO     | [data] control thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,115 | INFO     | [payload] validate_pre thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,119 | INFO     | [job] control thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,196 | INFO     | [payload] control thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-21 05:42:12] 2026-04-21 03:41:24,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-21 05:42:12] 2026-04-21 03:41:24,529 | INFO     | [payload] validate_post thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,568 | INFO     | [data] copytool_in thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:24,872 | INFO     | [data] copytool_out thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:25,082 | INFO     | [payload] failed_post thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:25,342 | INFO     | [job] queue monitor thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:28,387 | INFO     | [data] queue_monitor thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:32,957 | INFO     | job.realtimelogging is not enabled
[2026-04-21 05:42:12] 2026-04-21 03:41:33,963 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-21 05:42:12] 2026-04-21 03:41:53,425 | INFO     | PID=3227212 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-21 05:42:12] 2026-04-21 03:41:53,425 | INFO     | .. there are 15 such processes running
[2026-04-21 05:42:12] 2026-04-21 03:41:53,426 | INFO     | found 0 job(s) in 20 queues
[2026-04-21 05:42:12] 2026-04-21 03:41:53,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-21 05:42:12] 2026-04-21 03:41:53,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-21 05:42:12] 2026-04-21 03:42:05,000 | INFO     | [monitor] cgroup control has ended
[2026-04-21 05:42:12] 2026-04-21 03:42:07,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22432750307136)>', '<ExcThread(monitor, started 22432510650112)>']
[2026-04-21 05:42:12] 2026-04-21 03:42:07,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-21 05:42:12] 2026-04-21 03:42:07,497 | INFO     | [monitor] control thread has ended
[2026-04-21 05:42:12] 2026-04-21 03:42:12,026 | INFO     | all workflow threads have been joined
[2026-04-21 05:42:12] 2026-04-21 03:42:12,027 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-21 05:42:12] 2026-04-21 03:42:12,027 | INFO     | traces error code: 0
[2026-04-21 05:42:12] 2026-04-21 03:42:12,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-21 05:42:12] 2026-04-21 03:42:12,215 [wrapper] ==== pilot stdout END ====
[2026-04-21 05:42:12] 2026-04-21 03:42:12,220 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-21 05:42:12] 2026-04-21 03:42:12,224 [wrapper] pilotpid: 3227212
[2026-04-21 05:42:12] 2026-04-21 03:42:12,227 [wrapper] Pilot exit status: 0
[2026-04-21 05:42:12] 2026-04-21 03:42:12,241 [wrapper] pandaids: 7090675509
[2026-04-21 05:42:12] 2026-04-21 03:42:12,424 [wrapper] cleanup supervisor_pilot 3489402 3227213
[2026-04-21 05:42:12] 2026-04-21 03:42:12,428 [wrapper] Test setup, not cleaning
[2026-04-21 05:42:12] 2026-04-21 03:42:12,432 [wrapper] apfmon messages muted
[2026-04-21 05:42:12] 2026-04-21 03:42:12,436 [wrapper] ==== wrapper stdout END ====
[2026-04-21 05:42:12] 2026-04-21 03:42:12,439 [wrapper] ==== wrapper stderr END ====
[2026-04-21 05:42:12]  *** Error codes and diagnostics ***
[2026-04-21 05:42:12]     "exeErrorCode": 0,
[2026-04-21 05:42:12]     "pilotErrorCode": 0,
[2026-04-21 05:42:12]  *** Listing of results directory ***
[2026-04-21 05:42:12] total 411228
[2026-04-21 05:42:12] -rwx------. 1 boinc boinc     36322 Apr 18 12:42 runpilot2-wrapper.sh
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc    644190 Apr 18 12:46 pilot3.tar.gz
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc      5094 Apr 18 12:49 queuedata.json
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc       100 Apr 21 03:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-21 05:42:12] -rwxr-xr-x. 1 boinc boinc      7986 Apr 21 03:24 run_atlas
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc       105 Apr 21 03:24 job.xml
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc 225621678 Apr 21 03:24 EVNT.49263198._000912.pool.root.1
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc      6538 Apr 21 03:24 init_data.xml
[2026-04-21 05:42:12] drwxrwx--x. 2 boinc boinc      4096 Apr 21 03:24 shared
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc    656933 Apr 21 03:24 input.tar.gz
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc     15665 Apr 21 03:24 start_atlas.sh
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc         0 Apr 21 03:24 boinc_lockfile
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc      2575 Apr 21 03:24 pandaJob.out
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc    996231 Apr 21 03:24 agis_schedconf.cvmfs.json
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc   1512404 Apr 21 03:24 agis_ddmendpoints.agis.ALL.json
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc       443 Apr 21 03:24 workernode_map.json
[2026-04-21 05:42:12] drwx------. 5 boinc boinc      4096 Apr 21 03:24 pilot3
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc 189283640 Apr 21 05:40 HITS.49263200._069063.pool.root.1
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc       487 Apr 21 05:41 boinc_task_state.xml
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc      1026 Apr 21 05:41 memory_monitor_summary.json
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc    287226 Apr 21 05:41 log.49263200._069063.job.log.tgz.1
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc      6370 Apr 21 05:41 heartbeat_new.json
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc      6261 Apr 21 05:41 heartbeat.json
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc        95 Apr 21 05:41 pilot_heartbeat.json
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc      8192 Apr 21 05:42 boinc_mmap_file
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc        27 Apr 21 05:42 wrapper_checkpoint.txt
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc      4901 Apr 21 05:42 pilotlog.txt
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc    776168 Apr 21 05:42 log.49263200._069063.job.log.1
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc       357 Apr 21 05:42 output.list
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc       410 Apr 21 05:42 runtime_log
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc   1085440 Apr 21 05:42 result.tar.gz
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc      8826 Apr 21 05:42 runtime_log.err
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc       662 Apr 21 05:42 602d6ede8079.diag
[2026-04-21 05:42:12] -rw-r--r--. 1 boinc boinc     21082 Apr 21 05:42 stderr.txt
[2026-04-21 05:42:12] HITS file was successfully produced:
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc 189283640 Apr 21 05:40 shared/HITS.pool.root.1
[2026-04-21 05:42:12]  *** Contents of shared directory: ***
[2026-04-21 05:42:12] total 406912
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc 225621678 Apr 21 03:24 ATLAS.root_0
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc    656933 Apr 21 03:24 input.tar.gz
[2026-04-21 05:42:12] -rw-r--r--. 2 boinc boinc     15665 Apr 21 03:24 start_atlas.sh
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc 189283640 Apr 21 05:40 HITS.pool.root.1
[2026-04-21 05:42:12] -rw-------. 1 boinc boinc   1085440 Apr 21 05:42 result.tar.gz
05:42:14 (3219367): run_atlas exited; CPU time 31619.195741
05:42:14 (3219367): called boinc_finish(0)

</stderr_txt>
]]>

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