Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:33:35 (432282): wrapper (7.7.26015): starting
15:33:35 (432282): wrapper: running run_atlas (--nthreads 3)
[2026-04-18 15:33:35] Arguments: --nthreads 3
[2026-04-18 15:33:35] Threads: 3
[2026-04-18 15:33:35] Checking for CVMFS
[2026-04-18 15:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 15:33:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 15:33:36] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 15:33:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 15:33:36] 2.9.2.0 296447 592 63316 158585 0 50 11284761 36864000 0 130560 0 384729 99.983 26822 13505 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 15:33:36] CVMFS is ok
[2026-04-18 15:33:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 15:33:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 15:33:36] Further information can be found at the LHC@home message board.
[2026-04-18 15:33:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 15:33:36] Checking for apptainer binary...
[2026-04-18 15:33:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 15:33:36] Running /usr/bin/apptainer --version
[2026-04-18 15:33:36] apptainer version 1.4.1-1.1
[2026-04-18 15:33:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 15:33:36] belleA259
[2026-04-18 15:33:36] apptainer works
[2026-04-18 15:33:36] Set ATHENA_PROC_NUMBER=3
[2026-04-18 15:33:36] Set ATHENA_CORE_NUMBER=3
[2026-04-18 15:33:36] Starting ATLAS job with PandaID=7098312109
[2026-04-18 15:33:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 16:51:59]  *** The last 200 lines of the pilot log: ***
[2026-04-18 16:51:59] 2026-04-18 14:51:25,294 | INFO     | --- collectZombieJob: --- 10, [440780]
[2026-04-18 16:51:59] 2026-04-18 14:51:25,295 | INFO     | zombie collector waiting for pid 440780
[2026-04-18 16:51:59] 2026-04-18 14:51:25,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 16:51:59] 2026-04-18 14:51:25,295 | INFO     | collected zombie processes
[2026-04-18 16:51:59] 2026-04-18 14:51:25,295 | INFO     | will attempt to kill all subprocesses of pid=440780
[2026-04-18 16:51:59] 2026-04-18 14:51:25,349 | INFO     | process IDs to be killed: [440780] (in reverse order)
[2026-04-18 16:51:59] 2026-04-18 14:51:25,377 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 16:51:59] 2026-04-18 14:51:25,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 16:51:59] 2026-04-18 14:51:25,379 | INFO     | did not find any defunct processes belonging to 440780
[2026-04-18 16:51:59] 2026-04-18 14:51:25,380 | INFO     | did not find any defunct processes belonging to 440780
[2026-04-18 16:51:59] 2026-04-18 14:51:25,380 | INFO     | Ready for new job
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | **************************************
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | **************************************
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | 
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | architecture information:
[2026-04-18 16:51:59] 2026-04-18 14:51:25,381 | INFO     | executing command: cat /etc/os-release
[2026-04-18 16:51:59] 2026-04-18 14:51:25,390 | INFO     | cat /etc/os-release:
[2026-04-18 16:51:59] NAME="CentOS Linux"
[2026-04-18 16:51:59] VERSION="7 (Core)"
[2026-04-18 16:51:59] ID="centos"
[2026-04-18 16:51:59] ID_LIKE="rhel fedora"
[2026-04-18 16:51:59] VERSION_ID="7"
[2026-04-18 16:51:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 16:51:59] ANSI_COLOR="0;31"
[2026-04-18 16:51:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 16:51:59] HOME_URL="https://www.centos.org/"
[2026-04-18 16:51:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 16:51:59] 
[2026-04-18 16:51:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 16:51:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 16:51:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 16:51:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 16:51:59] 
[2026-04-18 16:51:59] 2026-04-18 14:51:25,390 | INFO     | **************************************
[2026-04-18 16:51:59] 2026-04-18 14:51:25,893 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 16:51:59] 2026-04-18 14:51:25,905 | INFO     | sufficient remaining disk space (350634377216 B)
[2026-04-18 16:51:59] 2026-04-18 14:51:25,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 16:51:59] 2026-04-18 14:51:25,905 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 16:51:59] 2026-04-18 14:51:25,905 | INFO     | update_server=False
[2026-04-18 16:51:59] 2026-04-18 14:51:25,905 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 16:51:59] 2026-04-18 14:51:25,948 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-18 16:51:59] 2026-04-18 14:51:25,948 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-18 16:51:59] 2026-04-18 14:51:25,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 16:51:59] 2026-04-18 14:51:25,948 | INFO     | will abort loop
[2026-04-18 16:51:59] 2026-04-18 14:51:25,977 | INFO     | all payload control threads have been joined
[2026-04-18 16:51:59] 2026-04-18 14:51:26,701 | INFO     | all data control threads have been joined
[2026-04-18 16:51:59] 2026-04-18 14:51:26,802 | INFO     | all job control threads have been joined
[2026-04-18 16:51:59] 2026-04-18 14:51:26,911 | INFO     | [job] retrieve thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:26,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 16:51:59] 2026-04-18 14:51:26,954 | INFO     | [job] job monitor thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:26,983 | INFO     | [payload] control thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:27,047 | INFO     | [data] copytool_in thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:27,360 | INFO     | [payload] validate_post thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:27,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 16:51:59] 2026-04-18 14:51:27,702 | INFO     | [data] control thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:27,808 | INFO     | [job] control thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,206 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,206 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,333 | INFO     | [job] validate thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,396 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,397 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,426 | INFO     | [payload] failed_post thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:28,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 16:51:59] 2026-04-18 14:51:28,927 | INFO     | [data] copytool_out thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:29,899 | INFO     | [job] queue monitor thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:31,451 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 16:51:59] 2026-04-18 14:51:52,414 | INFO     | [monitor] cgroup control has ended
[2026-04-18 16:51:59] 2026-04-18 14:51:54,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139988172212032)>', '<ExcThread(monitor, started 139987530012416)>']
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | INFO     | PID=436338 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 16:51:59] 2026-04-18 14:51:55,474 | INFO     | [monitor] control thread has ended
[2026-04-18 16:51:59] 2026-04-18 14:51:59,339 | INFO     | all workflow threads have been joined
[2026-04-18 16:51:59] 2026-04-18 14:51:59,339 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 16:51:59] 2026-04-18 14:51:59,339 | INFO     | traces error code: 0
[2026-04-18 16:51:59] 2026-04-18 14:51:59,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 16:51:59] 2026-04-18 14:51:59,389 [wrapper] ==== pilot stdout END ====
[2026-04-18 16:51:59] 2026-04-18 14:51:59,391 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 16:51:59] 2026-04-18 14:51:59,393 [wrapper] pilotpid: 436338
[2026-04-18 16:51:59] 2026-04-18 14:51:59,396 [wrapper] Pilot exit status: 0
[2026-04-18 16:51:59] 2026-04-18 14:51:59,403 [wrapper] pandaids: 7098312109
[2026-04-18 16:51:59] 2026-04-18 14:51:59,421 [wrapper] cleanup supervisor_pilot  450593 436339
[2026-04-18 16:51:59] 2026-04-18 14:51:59,423 [wrapper] Test setup, not cleaning
[2026-04-18 16:51:59] 2026-04-18 14:51:59,426 [wrapper] apfmon messages muted
[2026-04-18 16:51:59] 2026-04-18 14:51:59,428 [wrapper] ==== wrapper stdout END ====
[2026-04-18 16:51:59] 2026-04-18 14:51:59,430 [wrapper] ==== wrapper stderr END ====
[2026-04-18 16:51:59]  *** Error codes and diagnostics ***
[2026-04-18 16:51:59]     "exeErrorCode": 0,
[2026-04-18 16:51:59]     "pilotErrorCode": 0,
[2026-04-18 16:51:59]  *** Listing of results directory ***
[2026-04-18 16:51:59] total 337308
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc    644190 Apr 18 12:05 pilot3.tar.gz
[2026-04-18 16:51:59] -rwx------ 1 boinc boinc     36322 Apr 18 12:19 runpilot2-wrapper.sh
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc      5094 Apr 18 12:24 queuedata.json
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc       100 Apr 18 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 16:51:59] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 15:33 run_atlas
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc       105 Apr 18 15:33 job.xml
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc 189637129 Apr 18 15:33 EVNT.49514628._000025.pool.root.1
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc    656898 Apr 18 15:33 input.tar.gz
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc     15665 Apr 18 15:33 start_atlas.sh
[2026-04-18 16:51:59] drwxrwx--x 2 boinc boinc      4096 Apr 18 15:33 shared
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc         0 Apr 18 15:33 boinc_setup_complete
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc      6362 Apr 18 15:33 init_data.xml
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc         0 Apr 18 15:33 boinc_lockfile
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc      2476 Apr 18 15:33 pandaJob.out
[2026-04-18 16:51:59] -rw------- 1 boinc boinc    997973 Apr 18 15:33 agis_schedconf.cvmfs.json
[2026-04-18 16:51:59] -rw------- 1 boinc boinc   1512404 Apr 18 15:33 agis_ddmendpoints.agis.ALL.json
[2026-04-18 16:51:59] -rw------- 1 boinc boinc       426 Apr 18 15:33 workernode_map.json
[2026-04-18 16:51:59] drwx------ 5 boinc boinc      4096 Apr 18 15:33 pilot3
[2026-04-18 16:51:59] -rw------- 1 boinc boinc 150375156 Apr 18 16:51 HITS.49514634._001491.pool.root.1
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc       487 Apr 18 16:51 boinc_task_state.xml
[2026-04-18 16:51:59] -rw------- 1 boinc boinc        95 Apr 18 16:51 pilot_heartbeat.json
[2026-04-18 16:51:59] -rw------- 1 boinc boinc      1014 Apr 18 16:51 memory_monitor_summary.json
[2026-04-18 16:51:59] -rw------- 1 boinc boinc    213034 Apr 18 16:51 log.49514634._001491.job.log.tgz.1
[2026-04-18 16:51:59] -rw------- 1 boinc boinc      6311 Apr 18 16:51 heartbeat_new.json
[2026-04-18 16:51:59] -rw------- 1 boinc boinc      6202 Apr 18 16:51 heartbeat.json
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc      8192 Apr 18 16:51 boinc_mmap_file
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc        27 Apr 18 16:51 wrapper_checkpoint.txt
[2026-04-18 16:51:59] -rw------- 1 boinc boinc      4932 Apr 18 16:51 pilotlog.txt
[2026-04-18 16:51:59] -rw------- 1 boinc boinc    458708 Apr 18 16:51 log.49514634._001491.job.log.1
[2026-04-18 16:51:59] -rw------- 1 boinc boinc       357 Apr 18 16:51 output.list
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc       410 Apr 18 16:51 runtime_log
[2026-04-18 16:51:59] -rw------- 1 boinc boinc    686080 Apr 18 16:51 result.tar.gz
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc      8533 Apr 18 16:51 runtime_log.err
[2026-04-18 16:51:59] -rw------- 1 boinc boinc       660 Apr 18 16:51 5ab675f7ef9a.diag
[2026-04-18 16:51:59] -rw-r--r-- 1 boinc boinc     10613 Apr 18 16:51 stderr.txt
[2026-04-18 16:51:59] HITS file was successfully produced:
[2026-04-18 16:51:59] -rw------- 1 boinc boinc 150375156 Apr 18 16:51 shared/HITS.pool.root.1
[2026-04-18 16:51:59]  *** Contents of shared directory: ***
[2026-04-18 16:51:59] total 333388
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc 189637129 Apr 18 15:33 ATLAS.root_0
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc    656898 Apr 18 15:33 input.tar.gz
[2026-04-18 16:51:59] -rw-r--r-- 2 boinc boinc     15665 Apr 18 15:33 start_atlas.sh
[2026-04-18 16:51:59] -rw------- 1 boinc boinc 150375156 Apr 18 16:51 HITS.pool.root.1
[2026-04-18 16:51:59] -rw------- 1 boinc boinc    686080 Apr 18 16:51 result.tar.gz
16:52:01 (432282): run_atlas exited; CPU time 12985.662713
16:52:01 (432282): called boinc_finish(0)

</stderr_txt>
]]>

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