Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:26:59 (6262): wrapper (7.7.26015): starting
23:26:59 (6262): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 23:26:59] Arguments: --nthreads 8
[2026-04-18 23:26:59] Threads: 8
[2026-04-18 23:26:59] Checking for CVMFS
[2026-04-18 23:27:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 23:27:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 23:27:01] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 23:27:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 23:27:03] 2.11.2.0 16039 4582 97188 158598 3 93 17710172 25165825 1088 130560 0 1029789 99.749 3773627 30656 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 23:27:03] CVMFS is ok
[2026-04-18 23:27:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 23:27:03] Checking for apptainer binary...
[2026-04-18 23:27:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 23:27:03] Running /usr/bin/apptainer --version
[2026-04-18 23:27:03] apptainer version 1.3.2-1.el7
[2026-04-18 23:27:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 23:27:16] cg-vwn424.simple-grid.lan
[2026-04-18 23:27:16] apptainer works
[2026-04-18 23:27:16] Set ATHENA_PROC_NUMBER=8
[2026-04-18 23:27:16] Set ATHENA_CORE_NUMBER=8
[2026-04-18 23:27:16] Starting ATLAS job with PandaID=7091031637
[2026-04-18 23:27:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-19 03:21:26]  *** The last 200 lines of the pilot log: ***
[2026-04-19 03:21:26] 2026-04-19 01:20:48,523 | INFO     | sum of square deviations: 2912836010.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,524 | INFO     | sum of deviations: 94477288122.00002
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | mean x (centered): 0.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | mean y: 2430718.251184834
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | intersect: 2430718.251184834
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | chi2: 6.236524427308493
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | current chi2=6.236524427308493 (change=10.210654772041188 %)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,525 | INFO     | right removable region: 210
[2026-04-19 03:21:26] 2026-04-19 01:20:48,526 | INFO     | sum of square deviations: 2912836010.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,542 | INFO     | sum of deviations: 9855103270.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,542 | INFO     | mean x (centered): 0.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,542 | INFO     | mean y: 2474039.9668246447
[2026-04-19 03:21:26] 2026-04-19 01:20:48,543 | INFO     | intersect: 2474039.9668246447
[2026-04-19 03:21:26] 2026-04-19 01:20:48,543 | INFO     | chi2: 2.3222584970521574
[2026-04-19 03:21:26] 2026-04-19 01:20:48,543 | INFO     | current chi2=2.3222584970521574 (change=66.5656613181317 %)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,544 | INFO     | sum of square deviations: 2710627567.5
[2026-04-19 03:21:26] 2026-04-19 01:20:48,545 | INFO     | sum of deviations: -26431646449.5
[2026-04-19 03:21:26] 2026-04-19 01:20:48,545 | INFO     | mean x (centered): 0.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,546 | INFO     | mean y: 2501216.703883495
[2026-04-19 03:21:26] 2026-04-19 01:20:48,546 | INFO     | intersect: 2501216.703883495
[2026-04-19 03:21:26] 2026-04-19 01:20:48,546 | INFO     | chi2: 0.9305908381310941
[2026-04-19 03:21:26] 2026-04-19 01:20:48,546 | INFO     | current chi2=0.9305908381310941 (change=59.927336284381205 %)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,547 | INFO     | sum of square deviations: 2518000700.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,549 | INFO     | sum of deviations: -26390563163.000008
[2026-04-19 03:21:26] 2026-04-19 01:20:48,549 | INFO     | mean x (centered): 0.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,549 | INFO     | mean y: 2501135.1641791044
[2026-04-19 03:21:26] 2026-04-19 01:20:48,549 | INFO     | intersect: 2501135.1641791044
[2026-04-19 03:21:26] 2026-04-19 01:20:48,549 | INFO     | chi2: 0.9114945908552838
[2026-04-19 03:21:26] 2026-04-19 01:20:48,550 | INFO     | current chi2=0.9114945908552838 (change=2.0520562306589296 %)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,550 | INFO     | left removable region: 15
[2026-04-19 03:21:26] 2026-04-19 01:20:48,550 | INFO     | sum of square deviations: 2299168690.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,552 | INFO     | sum of deviations: -12461946871.000006
[2026-04-19 03:21:26] 2026-04-19 01:20:48,552 | INFO     | mean x (centered): 0.0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,552 | INFO     | mean y: 2512503.912820513
[2026-04-19 03:21:26] 2026-04-19 01:20:48,552 | INFO     | intersect: 2512503.912820513
[2026-04-19 03:21:26] 2026-04-19 01:20:48,553 | INFO     | chi2: 0.1165857014842969
[2026-04-19 03:21:26] 2026-04-19 01:20:48,553 | INFO     | current memory leak: -5.42 B/s (using 195 data points, chi2=0.12)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | ..............................
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | . Timing measurements:
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | . get job = 0 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | . initial setup = 121 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | . payload setup = 289 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,554 | INFO     | . stage-in = 0 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,555 | INFO     | . payload execution = 13312 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,555 | INFO     | . stage-out = 3 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,555 | INFO     | . log creation = 1 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,555 | INFO     | ..............................
[2026-04-19 03:21:26] 2026-04-19 01:20:48,765 | INFO     | 
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | job summary report
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | --------------------------------------------------
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | PanDA job id: 7091031637
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | task id: 48967094
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | errors: (none)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,766 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | pilot state: finished 
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | transexitcode: 0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | exeerrorcode: 0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | exeerrordiag: 
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | exitcode: 0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | exitmsg: OK
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | cpuconsumptiontime: 72480 s
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | nevents: 400
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | neventsw: 0
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | pid: 14754
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | pgrp: 14754
[2026-04-19 03:21:26] 2026-04-19 01:20:48,767 | INFO     | corecount: 8
[2026-04-19 03:21:26] 2026-04-19 01:20:48,768 | INFO     | event service: False
[2026-04-19 03:21:26] 2026-04-19 01:20:48,768 | INFO     | sizes: {0: 2280958, 1: 2281643, 2: 2259441, 3: 2283500, 13: 2283500, 13606: 2313925, 13610: 2322923, 13611: 2323173}
[2026-04-19 03:21:26] 2026-04-19 01:20:48,768 | INFO     | --------------------------------------------------
[2026-04-19 03:21:26] 2026-04-19 01:20:48,768 | INFO     | 
[2026-04-19 03:21:26] 2026-04-19 01:20:48,768 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-04-19 03:21:26] 2026-04-19 01:20:48,834 | WARNING  | process 14754 can no longer be monitored (due to stat problems) - aborting
[2026-04-19 03:21:26] 2026-04-19 01:20:48,835 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7091031637/memory_monitor_summary.json (trf name=prmon)
[2026-04-19 03:21:26] 2026-04-19 01:20:48,836 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3374745 B
[2026-04-19 03:21:26] 2026-04-19 01:20:48,837 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15353 B
[2026-04-19 03:21:26] 2026-04-19 01:20:48,837 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-19 03:21:26] 2026-04-19 01:20:49,012 | INFO     | sufficient remaining disk space (495346253824 B)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,012 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,013 | INFO     | size of work directory /var/lib/boinc/slots/9/PanDA_Pilot-7091031637: 3725930 B (within 5033164800 B limit)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,014 | INFO     | pfn file=/var/lib/boinc/slots/9/PanDA_Pilot-7091031637/HITS.48967094._020015.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,014 | INFO     | total size of present files: 0 B (workdir size: 3725930 B)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,014 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/9/PanDA_Pilot-7091031637/HITS.48967094._020015.pool.root.1 since it does not exist
[2026-04-19 03:21:26] 2026-04-19 01:20:49,107 | INFO     | number of running child processes to parent process 14754: 1
[2026-04-19 03:21:26] 2026-04-19 01:20:49,107 | INFO     | maximum number of monitored processes: 8
[2026-04-19 03:21:26] 2026-04-19 01:20:49,107 | INFO     | aborting job monitoring since job object (job id=7091031637) has expired
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,113 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,113 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-19 03:21:26] 2026-04-19 01:20:49,113 | INFO     | job 7091031637 has completed (purged errors)
[2026-04-19 03:21:26] 2026-04-19 01:20:49,113 | INFO     | overall cleanup function is called
[2026-04-19 03:21:26] 2026-04-19 01:20:50,121 | INFO     | --- collectZombieJob: --- 10, [14754]
[2026-04-19 03:21:26] 2026-04-19 01:20:50,122 | INFO     | zombie collector waiting for pid 14754
[2026-04-19 03:21:26] 2026-04-19 01:20:50,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-19 03:21:26] 2026-04-19 01:20:50,122 | INFO     | collected zombie processes
[2026-04-19 03:21:26] 2026-04-19 01:20:50,122 | INFO     | will attempt to kill all subprocesses of pid=14754
[2026-04-19 03:21:26] 2026-04-19 01:20:50,183 | INFO     | process IDs to be killed: [14754] (in reverse order)
[2026-04-19 03:21:26] 2026-04-19 01:20:50,228 | WARNING  | found no corresponding commands to process id(s)
[2026-04-19 03:21:26] 2026-04-19 01:20:50,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-19 03:21:26] 2026-04-19 01:20:50,230 | INFO     | did not find any defunct processes belonging to 14754
[2026-04-19 03:21:26] 2026-04-19 01:20:50,232 | INFO     | did not find any defunct processes belonging to 14754
[2026-04-19 03:21:26] 2026-04-19 01:20:50,233 | INFO     | Ready for new job
[2026-04-19 03:21:26] 2026-04-19 01:20:50,234 | INFO     | **************************************
[2026-04-19 03:21:26] 2026-04-19 01:20:50,234 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-19 03:21:26] 2026-04-19 01:20:50,235 | INFO     | **************************************
[2026-04-19 03:21:26] 2026-04-19 01:20:50,235 | INFO     | 
[2026-04-19 03:21:26] 2026-04-19 01:20:50,235 | INFO     | pilot is running in a VM
[2026-04-19 03:21:26] 2026-04-19 01:20:50,235 | INFO     | architecture information:
[2026-04-19 03:21:26] 2026-04-19 01:20:50,236 | INFO     | executing command: cat /etc/os-release
[2026-04-19 03:21:26] 2026-04-19 01:20:50,518 | INFO     | cat /etc/os-release:
[2026-04-19 03:21:26] NAME="CentOS Linux"
[2026-04-19 03:21:26] VERSION="7 (Core)"
[2026-04-19 03:21:26] ID="centos"
[2026-04-19 03:21:26] ID_LIKE="rhel fedora"
[2026-04-19 03:21:26] VERSION_ID="7"
[2026-04-19 03:21:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-19 03:21:26] ANSI_COLOR="0;31"
[2026-04-19 03:21:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-19 03:21:26] HOME_URL="https://www.centos.org/"
[2026-04-19 03:21:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-19 03:21:26] 
[2026-04-19 03:21:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-19 03:21:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-19 03:21:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-19 03:21:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-19 03:21:26] 
[2026-04-19 03:21:26] 2026-04-19 01:20:50,518 | INFO     | **************************************
[2026-04-19 03:21:26] 2026-04-19 01:20:51,021 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-19 03:21:26] 2026-04-19 01:20:51,213 | INFO     | sufficient remaining disk space (495351496704 B)
[2026-04-19 03:21:26] 2026-04-19 01:20:51,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-19 03:21:26] 2026-04-19 01:20:51,214 | INFO     | current server update state: UPDATING_FINAL
[2026-04-19 03:21:26] 2026-04-19 01:20:51,214 | INFO     | update_server=False
[2026-04-19 03:21:26] 2026-04-19 01:20:51,214 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-19 03:21:26] 2026-04-19 01:20:51,214 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-19 03:21:26] 2026-04-19 01:20:51,611 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-19 03:21:26] 2026-04-19 01:20:51,611 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-19 03:21:26] 2026-04-19 01:20:51,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-19 03:21:26] 2026-04-19 01:20:51,612 | INFO     | will abort loop
[2026-04-19 03:21:26] 2026-04-19 01:20:51,957 | INFO     | all payload control threads have been joined
[2026-04-19 03:21:26] 2026-04-19 01:20:52,185 | INFO     | all data control threads have been joined
[2026-04-19 03:21:26] 2026-04-19 01:20:52,220 | INFO     | [job] retrieve thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:52,390 | INFO     | [payload] validate_pre thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:52,412 | INFO     | [payload] validate_post thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:52,493 | INFO     | [payload] failed_post thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:52,575 | INFO     | all job control threads have been joined
[2026-04-19 03:21:26] 2026-04-19 01:20:52,617 | INFO     | [job] job monitor thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:52,963 | INFO     | [payload] control thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,021 | INFO     | [data] copytool_in thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,050 | INFO     | [job] validate thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,191 | INFO     | [data] control thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,221 | INFO     | [data] copytool_out thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,430 | INFO     | [payload] execute_payloads thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,581 | INFO     | [job] control thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,592 | INFO     | [job] create_data_payload thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:53,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-19 03:21:26] 2026-04-19 01:20:54,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-19 03:21:26] 2026-04-19 01:20:54,775 | INFO     | [job] queue monitor thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:20:58,518 | INFO     | [data] queue_monitor thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:21:01,351 | INFO     | job.realtimelogging is not enabled
[2026-04-19 03:21:26] 2026-04-19 01:21:02,357 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-19 03:21:26] 2026-04-19 01:21:06,778 | INFO     | [monitor] cgroup control has ended
[2026-04-19 03:21:26] 2026-04-19 01:21:07,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847765968704)>', '<ExcThread(monitor, started 139847322810112)>']
[2026-04-19 03:21:26] 2026-04-19 01:21:12,582 | INFO     | all workflow threads have been joined
[2026-04-19 03:21:26] 2026-04-19 01:21:12,583 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-19 03:21:26] 2026-04-19 01:21:12,583 | INFO     | traces error code: 0
[2026-04-19 03:21:26] 2026-04-19 01:21:12,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-19 03:21:26] 2026-04-19 01:21:22,188 | INFO     | PID=10246 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-19 03:21:26] 2026-04-19 01:21:22,188 | INFO     | .. there are 2 such processes running
[2026-04-19 03:21:26] 2026-04-19 01:21:22,188 | INFO     | found 0 job(s) in 20 queues
[2026-04-19 03:21:26] 2026-04-19 01:21:22,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-19 03:21:26] 2026-04-19 01:21:22,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-19 03:21:26] 2026-04-19 01:21:22,189 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-19 03:21:26] 2026-04-19 01:21:22,189 | INFO     | [monitor] control thread has ended
[2026-04-19 03:21:26] 2026-04-19 01:21:22,557 [wrapper] ==== pilot stdout END ====
[2026-04-19 03:21:26] 2026-04-19 01:21:22,664 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-19 03:21:26] 2026-04-19 01:21:22,731 [wrapper] pilotpid: 10246
[2026-04-19 03:21:26] 2026-04-19 01:21:22,805 [wrapper] Pilot exit status: 0
[2026-04-19 03:21:26] 2026-04-19 01:21:23,330 [wrapper] pandaids: 7091031637
[2026-04-19 03:21:26] 2026-04-19 01:21:23,932 [wrapper] cleanup supervisor_pilot  5514 10247
[2026-04-19 03:21:26] 2026-04-19 01:21:24,047 [wrapper] Test setup, not cleaning
[2026-04-19 03:21:26] 2026-04-19 01:21:24,144 [wrapper] apfmon messages muted
[2026-04-19 03:21:26] 2026-04-19 01:21:24,232 [wrapper] ==== wrapper stdout END ====
[2026-04-19 03:21:26] 2026-04-19 01:21:24,268 [wrapper] ==== wrapper stderr END ====
[2026-04-19 03:21:26]  *** Error codes and diagnostics ***
[2026-04-19 03:21:26]     "exeErrorCode": 0,
[2026-04-19 03:21:26]     "pilotErrorCode": 0,
[2026-04-19 03:21:26]  *** Listing of results directory ***
[2026-04-19 03:21:26] total 420176
[2026-04-19 03:21:26] -rwx------. 1 boinc boinc     36322 Apr 18 11:53 runpilot2-wrapper.sh
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc    644190 Apr 18 12:05 pilot3.tar.gz
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc      5094 Apr 18 12:05 queuedata.json
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc       100 Apr 18 23:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-19 03:21:26] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 23:26 run_atlas
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc       105 Apr 18 23:26 job.xml
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc 217292362 Apr 18 23:26 EVNT.48967092._000446.pool.root.1
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc      6305 Apr 18 23:26 init_data.xml
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc     15665 Apr 18 23:26 start_atlas.sh
[2026-04-19 03:21:26] drwxrwx--x. 2 boinc boinc        68 Apr 18 23:26 shared
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc    656936 Apr 18 23:26 input.tar.gz
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc         0 Apr 18 23:26 boinc_lockfile
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc      2601 Apr 18 23:27 pandaJob.out
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc       415 Apr 18 23:33 workernode_map.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc    997676 Apr 18 23:33 agis_schedconf.cvmfs.json
[2026-04-19 03:21:26] drwx------. 5 boinc boinc      4096 Apr 18 23:33 pilot3
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc 205624422 Apr 19 03:19 HITS.48967094._020015.pool.root.1
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc       489 Apr 19 03:19 boinc_task_state.xml
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc      1022 Apr 19 03:20 memory_monitor_summary.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc        95 Apr 19 03:20 pilot_heartbeat.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc   1512404 Apr 19 03:20 agis_ddmendpoints.agis.ALL.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc    388620 Apr 19 03:20 log.48967094._020015.job.log.tgz.1
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc      6347 Apr 19 03:20 heartbeat_new.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc      6238 Apr 19 03:20 heartbeat.json
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc       820 Apr 19 03:21 pilotlog.txt
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc      8192 Apr 19 03:21 boinc_mmap_file
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc        28 Apr 19 03:21 wrapper_checkpoint.txt
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc   1264986 Apr 19 03:21 log.48967094._020015.job.log.1
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc       357 Apr 19 03:21 output.list
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc       410 Apr 19 03:21 runtime_log
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc   1669120 Apr 19 03:21 result.tar.gz
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc      8438 Apr 19 03:21 runtime_log.err
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc       655 Apr 19 03:21 54ab27dfe33e.diag
[2026-04-19 03:21:26] -rw-r--r--. 1 boinc boinc     21201 Apr 19 03:21 stderr.txt
[2026-04-19 03:21:26] HITS file was successfully produced:
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc 205624422 Apr 19 03:19 shared/HITS.pool.root.1
[2026-04-19 03:21:26]  *** Contents of shared directory: ***
[2026-04-19 03:21:26] total 415300
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc 217292362 Apr 18 23:26 ATLAS.root_0
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc     15665 Apr 18 23:26 start_atlas.sh
[2026-04-19 03:21:26] -rw-r--r--. 2 boinc boinc    656936 Apr 18 23:26 input.tar.gz
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc 205624422 Apr 19 03:19 HITS.pool.root.1
[2026-04-19 03:21:26] -rw-------. 1 boinc boinc   1669120 Apr 19 03:21 result.tar.gz
03:21:28 (6262): run_atlas exited; CPU time 72625.372859
03:21:28 (6262): called boinc_finish(0)

</stderr_txt>
]]>

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