Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:37:41 (4049025): wrapper (7.7.26015): starting
03:37:41 (4049025): wrapper: running run_atlas (--nthreads 4)
[2026-04-20 03:37:41] Arguments: --nthreads 4
[2026-04-20 03:37:41] Threads: 4
[2026-04-20 03:37:41] Checking for CVMFS
[2026-04-20 03:37:41] No cvmfs_config command found, will try listing directly
[2026-04-20 03:37:41] CVMFS is ok
[2026-04-20 03:37:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-20 03:37:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-20 03:37:41] Further information can be found at the LHC@home message board.
[2026-04-20 03:37:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-20 03:37:41] Checking for apptainer binary...
[2026-04-20 03:37:41] which: no apptainer in ((null))
[2026-04-20 03:37:41] apptainer is not installed, using version from CVMFS
[2026-04-20 03:37:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-20 03:37:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot112/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-20 03:37:42] apptainer works
[2026-04-20 03:37:42] Set ATHENA_PROC_NUMBER=4
[2026-04-20 03:37:42] Set ATHENA_CORE_NUMBER=4
[2026-04-20 03:37:42] Starting ATLAS job with PandaID=7098078376
[2026-04-20 03:37:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot112/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-20 06:21:21]  *** The last 200 lines of the pilot log: ***
[2026-04-20 06:21:21] 2026-04-20 04:19:02,875 | INFO     | extracted standard memory fields from prmon json
[2026-04-20 06:21:21] 2026-04-20 04:19:02,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-20 06:21:21] 2026-04-20 04:19:02,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-20 06:21:21] 2026-04-20 04:19:02,879 | INFO     | fitting pss+swap vs Time
[2026-04-20 06:21:21] 2026-04-20 04:19:02,879 | INFO     | sum of square deviations: 1223016419.5
[2026-04-20 06:21:21] 2026-04-20 04:19:02,880 | INFO     | sum of deviations: 14730669119.000002
[2026-04-20 06:21:21] 2026-04-20 04:19:02,880 | INFO     | mean x (centered): 0.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,880 | INFO     | mean y: 2326422.8860759493
[2026-04-20 06:21:21] 2026-04-20 04:19:02,881 | INFO     | intersect: 2326422.8860759493
[2026-04-20 06:21:21] 2026-04-20 04:19:02,881 | INFO     | chi2: 1.4180142840926042
[2026-04-20 06:21:21] 2026-04-20 04:19:02,881 | INFO     | sum of square deviations: 1110539892.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,882 | INFO     | sum of deviations: 14287143426.000004
[2026-04-20 06:21:21] 2026-04-20 04:19:02,882 | INFO     | mean x (centered): 0.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,882 | INFO     | mean y: 2325821.418300654
[2026-04-20 06:21:21] 2026-04-20 04:19:02,882 | INFO     | intersect: 2325821.418300654
[2026-04-20 06:21:21] 2026-04-20 04:19:02,883 | INFO     | chi2: 1.4194988087728537
[2026-04-20 06:21:21] 2026-04-20 04:19:02,883 | INFO     | current chi2=1.4194988087728537 (change=-0.10469038971631141 %)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,883 | INFO     | right removable region: 152
[2026-04-20 06:21:21] 2026-04-20 04:19:02,883 | INFO     | sum of square deviations: 1110539892.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,884 | INFO     | sum of deviations: -6265245034.999999
[2026-04-20 06:21:21] 2026-04-20 04:19:02,884 | INFO     | mean x (centered): 0.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,884 | INFO     | mean y: 2354433.117647059
[2026-04-20 06:21:21] 2026-04-20 04:19:02,884 | INFO     | intersect: 2354433.117647059
[2026-04-20 06:21:21] 2026-04-20 04:19:02,885 | INFO     | chi2: 0.014322392334190024
[2026-04-20 06:21:21] 2026-04-20 04:19:02,885 | INFO     | current chi2=0.014322392334190024 (change=98.98996840195056 %)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,885 | INFO     | sum of square deviations: 1005179777.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,886 | INFO     | sum of deviations: -5236595111.5
[2026-04-20 06:21:21] 2026-04-20 04:19:02,886 | INFO     | mean x (centered): 0.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,886 | INFO     | mean y: 2352943.0202702703
[2026-04-20 06:21:21] 2026-04-20 04:19:02,886 | INFO     | intersect: 2352943.0202702703
[2026-04-20 06:21:21] 2026-04-20 04:19:02,886 | INFO     | chi2: 0.01394956494643768
[2026-04-20 06:21:21] 2026-04-20 04:19:02,887 | INFO     | current chi2=0.01394956494643768 (change=2.6031083289231067 %)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,887 | INFO     | left removable region: 10
[2026-04-20 06:21:21] 2026-04-20 04:19:02,887 | INFO     | sum of square deviations: 887813855.5
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | sum of deviations: -5018685757.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | mean x (centered): 0.0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | mean y: 2353282.971830986
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | intersect: 2353282.971830986
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | chi2: 0.013677113037290236
[2026-04-20 06:21:21] 2026-04-20 04:19:02,888 | INFO     | current memory leak: -5.65 B/s (using 142 data points, chi2=0.01)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | could have reported an average CPU frequency of 2680 MHz (9 samples)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | ..............................
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | . Timing measurements:
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | . get job = 0 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | . initial setup = 8 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | . payload setup = 15 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,889 | INFO     | . stage-in = 0 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,890 | INFO     | . payload execution = 9622 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,890 | INFO     | . stage-out = 0 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,890 | INFO     | . log creation = 0 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,890 | INFO     | ..............................
[2026-04-20 06:21:21] 2026-04-20 04:19:02,981 | INFO     | 
[2026-04-20 06:21:21] 2026-04-20 04:19:02,981 | INFO     | job summary report
[2026-04-20 06:21:21] 2026-04-20 04:19:02,981 | INFO     | --------------------------------------------------
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | PanDA job id: 7098078376
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | task id: 49545114
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | errors: (none)
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | pilot state: finished 
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | transexitcode: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | exeerrorcode: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | exeerrordiag: 
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | exitcode: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | exitmsg: OK
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | cpuconsumptiontime: 36597 s
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | nevents: 400
[2026-04-20 06:21:21] 2026-04-20 04:19:02,982 | INFO     | neventsw: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | pid: 4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | pgrp: 4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | corecount: 4
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | event service: False
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | sizes: {0: 2283441, 11: 2283441, 9642: 2312274, 9644: 2321554}
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | --------------------------------------------------
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | 
[2026-04-20 06:21:21] 2026-04-20 04:19:02,983 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot112/slots/1
[2026-04-20 06:21:21] 2026-04-20 04:19:03,015 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,015 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,015 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,015 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,016 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,016 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,016 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,016 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,016 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-20 06:21:21] 2026-04-20 04:19:03,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,020 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-20 06:21:21] 2026-04-20 04:19:03,020 | INFO     | job 7098078376 has completed (purged errors)
[2026-04-20 06:21:21] 2026-04-20 04:19:03,020 | INFO     | overall cleanup function is called
[2026-04-20 06:21:21] 2026-04-20 04:19:04,029 | INFO     | --- collectZombieJob: --- 10, [4058683]
[2026-04-20 06:21:21] 2026-04-20 04:19:04,029 | INFO     | zombie collector waiting for pid 4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:04,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-20 06:21:21] 2026-04-20 04:19:04,029 | INFO     | collected zombie processes
[2026-04-20 06:21:21] 2026-04-20 04:19:04,029 | INFO     | will attempt to kill all subprocesses of pid=4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:05,022 | INFO     | process IDs to be killed: [4058683] (in reverse order)
[2026-04-20 06:21:21] 2026-04-20 04:19:05,364 | WARNING  | found no corresponding commands to process id(s)
[2026-04-20 06:21:21] 2026-04-20 04:19:05,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-20 06:21:21] 2026-04-20 04:19:05,463 | INFO     | did not find any defunct processes belonging to 4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:05,545 | INFO     | did not find any defunct processes belonging to 4058683
[2026-04-20 06:21:21] 2026-04-20 04:19:05,545 | INFO     | Ready for new job
[2026-04-20 06:21:21] 2026-04-20 04:19:05,547 | INFO     | **************************************
[2026-04-20 06:21:21] 2026-04-20 04:19:05,548 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-20 06:21:21] 2026-04-20 04:19:05,548 | INFO     | **************************************
[2026-04-20 06:21:21] 2026-04-20 04:19:05,548 | INFO     | 
[2026-04-20 06:21:21] 2026-04-20 04:19:05,562 | INFO     | architecture information:
[2026-04-20 06:21:21] 2026-04-20 04:19:05,562 | INFO     | executing command: cat /etc/os-release
[2026-04-20 06:21:21] 2026-04-20 04:19:05,589 | INFO     | cat /etc/os-release:
[2026-04-20 06:21:21] NAME="CentOS Linux"
[2026-04-20 06:21:21] VERSION="7 (Core)"
[2026-04-20 06:21:21] ID="centos"
[2026-04-20 06:21:21] ID_LIKE="rhel fedora"
[2026-04-20 06:21:21] VERSION_ID="7"
[2026-04-20 06:21:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-20 06:21:21] ANSI_COLOR="0;31"
[2026-04-20 06:21:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-20 06:21:21] HOME_URL="https://www.centos.org/"
[2026-04-20 06:21:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-20 06:21:21] 
[2026-04-20 06:21:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-20 06:21:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-20 06:21:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-20 06:21:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-20 06:21:21] 
[2026-04-20 06:21:21] 2026-04-20 04:19:05,592 | INFO     | **************************************
[2026-04-20 06:21:21] 2026-04-20 04:19:05,843 | WARNING  | process 4058683 can no longer be monitored (due to stat problems) - aborting
[2026-04-20 06:21:21] 2026-04-20 04:19:06,095 | INFO     | executing command: df -mP /var/lib/boinc/var/slot112/slots/1
[2026-04-20 06:21:21] 2026-04-20 04:19:06,129 | INFO     | sufficient remaining disk space (174558543872 B)
[2026-04-20 06:21:21] 2026-04-20 04:19:06,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-20 06:21:21] 2026-04-20 04:19:06,130 | INFO     | current server update state: UPDATING_FINAL
[2026-04-20 06:21:21] 2026-04-20 04:19:06,130 | INFO     | update_server=False
[2026-04-20 06:21:21] 2026-04-20 04:19:06,130 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-20 06:21:21] 2026-04-20 04:19:06,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-20 06:21:21] 2026-04-20 04:19:06,501 | INFO     | using path: /var/lib/boinc/var/slot112/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 06:21:21] 2026-04-20 04:19:06,502 | INFO     | using path: /var/lib/boinc/var/slot112/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 06:21:21] 2026-04-20 04:19:06,502 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-20 06:21:21] 2026-04-20 04:19:06,502 | WARNING  | maxPSS not found in memory monitor output
[2026-04-20 06:21:21] 2026-04-20 04:19:06,503 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot112/slots/1/PanDA_Pilot-7098078376/payload.stdout) since it has not been created yet
[2026-04-20 06:21:21] 2026-04-20 04:19:06,503 | INFO     | executing command: df -mP /var/lib/boinc/var/slot112/slots/1
[2026-04-20 06:21:21] 2026-04-20 04:19:06,527 | INFO     | sufficient remaining disk space (174558543872 B)
[2026-04-20 06:21:21] 2026-04-20 04:19:06,527 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-20 06:21:21] 2026-04-20 04:19:06,527 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot112/slots/1/PanDA_Pilot-7098078376/HITS.49545114._031013.pool.root.1 since it does not exist
[2026-04-20 06:21:21] 2026-04-20 04:19:06,560 | INFO     | all data control threads have been joined
[2026-04-20 06:21:21] 2026-04-20 04:19:06,880 | INFO     | all job control threads have been joined
[2026-04-20 06:21:21] 2026-04-20 04:19:07,135 | INFO     | [job] retrieve thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,213 | INFO     | [job] validate thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,332 | INFO     | all payload control threads have been joined
[2026-04-20 06:21:21] 2026-04-20 04:19:07,382 | INFO     | number of running child processes to parent process 4058683: 1
[2026-04-20 06:21:21] 2026-04-20 04:19:07,382 | INFO     | maximum number of monitored processes: 6
[2026-04-20 06:21:21] 2026-04-20 04:19:07,383 | INFO     | aborting job monitoring since job object (job id=7098078376) has expired
[2026-04-20 06:21:21] 2026-04-20 04:19:07,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-20 06:21:21] 2026-04-20 04:19:07,383 | INFO     | will abort loop
[2026-04-20 06:21:21] 2026-04-20 04:19:07,391 | INFO     | [job] create_data_payload thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,429 | INFO     | [payload] validate_pre thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,565 | INFO     | [data] control thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,615 | INFO     | [payload] failed_post thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,736 | INFO     | [payload] execute_payloads thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,885 | INFO     | [job] control thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:07,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-20 06:21:21] 2026-04-20 04:19:08,136 | INFO     | [data] copytool_out thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:08,337 | INFO     | [payload] control thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:08,367 | INFO     | [data] copytool_in thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:08,388 | INFO     | [job] job monitor thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:08,678 | INFO     | [payload] validate_post thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:08,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-20 06:21:21] 2026-04-20 04:19:08,997 | INFO     | [job] queue monitor thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:12,856 | INFO     | [data] queue_monitor thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:17,002 | INFO     | job.realtimelogging is not enabled
[2026-04-20 06:21:21] 2026-04-20 04:19:18,007 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-20 06:21:21] 2026-04-20 04:19:22,831 | INFO     | [monitor] cgroup control has ended
[2026-04-20 06:21:21] 2026-04-20 04:19:24,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22664924972864)>', '<ExcThread(monitor, started 22664682149632)>']
[2026-04-20 06:21:21] 2026-04-20 04:19:29,386 | INFO     | all workflow threads have been joined
[2026-04-20 06:21:21] 2026-04-20 04:19:29,386 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-20 06:21:21] 2026-04-20 04:19:29,386 | INFO     | traces error code: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:29,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-20 06:21:21] 2026-04-20 04:19:36,810 | INFO     | PID=4053409 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-20 06:21:21] 2026-04-20 04:19:36,810 | INFO     | .. there are 22 such processes running
[2026-04-20 06:21:21] 2026-04-20 04:19:36,811 | INFO     | found 0 job(s) in 20 queues
[2026-04-20 06:21:21] 2026-04-20 04:19:36,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-20 06:21:21] 2026-04-20 04:19:36,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-20 06:21:21] 2026-04-20 04:19:36,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-20 06:21:21] 2026-04-20 04:19:36,812 | CRITICAL | thread 'MainThread' is not alive
[2026-04-20 06:21:21] 2026-04-20 04:19:36,812 | INFO     | [monitor] control thread has ended
[2026-04-20 06:21:21] 2026-04-20 04:19:36,977 [wrapper] ==== pilot stdout END ====
[2026-04-20 06:21:21] 2026-04-20 04:19:36,982 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-20 06:21:21] 2026-04-20 04:19:36,985 [wrapper] pilotpid: 4053409
[2026-04-20 06:21:21] 2026-04-20 04:19:36,989 [wrapper] Pilot exit status: 0
[2026-04-20 06:21:21] 2026-04-20 04:19:37,007 [wrapper] pandaids: 7098078376
[2026-04-20 06:21:21] 2026-04-20 04:19:37,214 [wrapper] cleanup supervisor_pilot  256312 4053410
[2026-04-20 06:21:21] 2026-04-20 04:19:37,220 [wrapper] Test setup, not cleaning
[2026-04-20 06:21:21] 2026-04-20 04:19:37,224 [wrapper] apfmon messages muted
[2026-04-20 06:21:21] 2026-04-20 04:19:37,228 [wrapper] ==== wrapper stdout END ====
[2026-04-20 06:21:21] 2026-04-20 04:19:37,232 [wrapper] ==== wrapper stderr END ====
[2026-04-20 06:21:21]  *** Error codes and diagnostics ***
[2026-04-20 06:21:21]     "exeErrorCode": 0,
[2026-04-20 06:21:21]     "pilotErrorCode": 0,
[2026-04-20 06:21:21]  *** Listing of results directory ***
[2026-04-20 06:21:21] total 459432
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-20 06:21:21] -rwx------. 1 boinc boinc     36322 Apr 18 11:25 runpilot2-wrapper.sh
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc      5094 Apr 18 11:42 queuedata.json
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc       100 Apr 20 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-20 06:21:21] -rwxr-xr-x. 1 boinc boinc      7986 Apr 20 03:37 run_atlas
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc       105 Apr 20 03:37 job.xml
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc      6541 Apr 20 03:37 init_data.xml
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc 278143931 Apr 20 03:37 EVNT.49539591._000524.pool.root.1
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc     15665 Apr 20 03:37 start_atlas.sh
[2026-04-20 06:21:21] drwxrwx--x. 2 boinc boinc      4096 Apr 20 03:37 shared
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc    656944 Apr 20 03:37 input.tar.gz
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc         0 Apr 20 03:37 boinc_lockfile
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc      2605 Apr 20 03:37 pandaJob.out
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc    997737 Apr 20 03:37 agis_schedconf.cvmfs.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc   1512404 Apr 20 03:37 agis_ddmendpoints.agis.ALL.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc       444 Apr 20 03:38 workernode_map.json
[2026-04-20 06:21:21] drwx------. 5 boinc boinc      4096 Apr 20 03:38 pilot3
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc       487 Apr 20 06:18 boinc_task_state.xml
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc 185895954 Apr 20 06:18 HITS.49545114._031013.pool.root.1
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc      1026 Apr 20 06:18 memory_monitor_summary.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc    278792 Apr 20 06:19 log.49545114._031013.job.log.tgz.1
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc      6366 Apr 20 06:19 heartbeat_new.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc      6257 Apr 20 06:19 heartbeat.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc        95 Apr 20 06:19 pilot_heartbeat.json
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc       894 Apr 20 06:19 pilotlog.txt
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc    898673 Apr 20 06:19 log.49545114._031013.job.log.1
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc       357 Apr 20 06:19 output.list
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc       410 Apr 20 06:19 runtime_log
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc   1198080 Apr 20 06:19 result.tar.gz
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc      8843 Apr 20 06:19 runtime_log.err
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc       663 Apr 20 06:19 4e0901dae8d5.diag
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc        27 Apr 20 06:20 wrapper_checkpoint.txt
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc      8192 Apr 20 06:21 boinc_mmap_file
[2026-04-20 06:21:21] -rw-r--r--. 1 boinc boinc     21151 Apr 20 06:21 stderr.txt
[2026-04-20 06:21:21] HITS file was successfully produced:
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc 185895954 Apr 20 06:18 shared/HITS.pool.root.1
[2026-04-20 06:21:21]  *** Contents of shared directory: ***
[2026-04-20 06:21:21] total 455008
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc 278143931 Apr 20 03:37 ATLAS.root_0
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc     15665 Apr 20 03:37 start_atlas.sh
[2026-04-20 06:21:21] -rw-r--r--. 2 boinc boinc    656944 Apr 20 03:37 input.tar.gz
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc 185895954 Apr 20 06:18 HITS.pool.root.1
[2026-04-20 06:21:21] -rw-------. 1 boinc boinc   1198080 Apr 20 06:19 result.tar.gz
06:21:22 (4049025): run_atlas exited; CPU time 37237.504114
06:21:22 (4049025): called boinc_finish(0)

</stderr_txt>
]]>

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