Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:40:54 (914519): wrapper (7.7.26015): starting
20:40:54 (914519): wrapper: running run_atlas (--nthreads 4)
[2026-04-18 20:40:54] Arguments: --nthreads 4
[2026-04-18 20:40:54] Threads: 4
[2026-04-18 20:40:54] Checking for CVMFS
[2026-04-18 20:40:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 20:40:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 20:40:55] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 20:40:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 20:40:55] 2.9.2.0 745507 889 80276 158594 0 50 34155227 36864000 0 130560 0 657463 99.986 40085 11958 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 20:40:55] CVMFS is ok
[2026-04-18 20:40:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 20:40:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 20:40:55] Further information can be found at the LHC@home message board.
[2026-04-18 20:40:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 20:40:55] Checking for apptainer binary...
[2026-04-18 20:40:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 20:40:55] Running /usr/bin/apptainer --version
[2026-04-18 20:40:55] apptainer version 1.4.1-1.1
[2026-04-18 20:40:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 20:40:55] cosA131
[2026-04-18 20:40:55] apptainer works
[2026-04-18 20:40:55] Set ATHENA_PROC_NUMBER=4
[2026-04-18 20:40:55] Set ATHENA_CORE_NUMBER=4
[2026-04-18 20:40:55] Starting ATLAS job with PandaID=7098078340
[2026-04-18 20:40:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 21:54:18]  *** The last 200 lines of the pilot log: ***
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | job 7098078340 has completed (purged errors)
[2026-04-18 21:54:18] 2026-04-18 19:53:32,983 | INFO     | overall cleanup function is called
[2026-04-18 21:54:18] 2026-04-18 19:53:33,990 | INFO     | --- collectZombieJob: --- 10, [923145]
[2026-04-18 21:54:18] 2026-04-18 19:53:33,990 | INFO     | zombie collector waiting for pid 923145
[2026-04-18 21:54:18] 2026-04-18 19:53:33,990 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 21:54:18] 2026-04-18 19:53:33,990 | INFO     | collected zombie processes
[2026-04-18 21:54:18] 2026-04-18 19:53:33,990 | INFO     | will attempt to kill all subprocesses of pid=923145
[2026-04-18 21:54:18] 2026-04-18 19:53:34,031 | INFO     | process IDs to be killed: [923145] (in reverse order)
[2026-04-18 21:54:18] 2026-04-18 19:53:34,064 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 21:54:18] 2026-04-18 19:53:34,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 21:54:18] 2026-04-18 19:53:34,066 | INFO     | did not find any defunct processes belonging to 923145
[2026-04-18 21:54:18] 2026-04-18 19:53:34,067 | INFO     | did not find any defunct processes belonging to 923145
[2026-04-18 21:54:18] 2026-04-18 19:53:34,067 | INFO     | Ready for new job
[2026-04-18 21:54:18] 2026-04-18 19:53:34,068 | INFO     | **************************************
[2026-04-18 21:54:18] 2026-04-18 19:53:34,068 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 21:54:18] 2026-04-18 19:53:34,068 | INFO     | **************************************
[2026-04-18 21:54:18] 2026-04-18 19:53:34,068 | INFO     | 
[2026-04-18 21:54:18] 2026-04-18 19:53:34,069 | INFO     | architecture information:
[2026-04-18 21:54:18] 2026-04-18 19:53:34,069 | INFO     | executing command: cat /etc/os-release
[2026-04-18 21:54:18] 2026-04-18 19:53:34,083 | INFO     | cat /etc/os-release:
[2026-04-18 21:54:18] NAME="CentOS Linux"
[2026-04-18 21:54:18] VERSION="7 (Core)"
[2026-04-18 21:54:18] ID="centos"
[2026-04-18 21:54:18] ID_LIKE="rhel fedora"
[2026-04-18 21:54:18] VERSION_ID="7"
[2026-04-18 21:54:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 21:54:18] ANSI_COLOR="0;31"
[2026-04-18 21:54:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 21:54:18] HOME_URL="https://www.centos.org/"
[2026-04-18 21:54:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 21:54:18] 
[2026-04-18 21:54:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 21:54:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 21:54:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 21:54:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 21:54:18] 
[2026-04-18 21:54:18] 2026-04-18 19:53:34,084 | INFO     | **************************************
[2026-04-18 21:54:18] 2026-04-18 19:53:34,586 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | INFO     | sufficient remaining disk space (317270786048 B)
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | INFO     | update_server=False
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 21:54:18] 2026-04-18 19:53:34,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 21:54:18] 2026-04-18 19:53:34,970 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-18 21:54:18] 2026-04-18 19:53:34,971 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-18 21:54:18] 2026-04-18 19:53:34,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 21:54:18] 2026-04-18 19:53:34,971 | INFO     | will abort loop
[2026-04-18 21:54:18] 2026-04-18 19:53:35,159 | INFO     | all payload control threads have been joined
[2026-04-18 21:54:18] 2026-04-18 19:53:35,264 | INFO     | all data control threads have been joined
[2026-04-18 21:54:18] 2026-04-18 19:53:35,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 21:54:18] 2026-04-18 19:53:35,462 | INFO     | all job control threads have been joined
[2026-04-18 21:54:18] 2026-04-18 19:53:35,610 | INFO     | [job] queue monitor thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,611 | INFO     | [job] retrieve thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,620 | INFO     | [payload] failed_post thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,686 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,721 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,948 | INFO     | [data] copytool_in thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:35,976 | INFO     | [job] job monitor thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,072 | INFO     | [payload] validate_post thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,165 | INFO     | [payload] control thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,270 | INFO     | [data] control thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,432 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,468 | INFO     | [job] control thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:36,722 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:37,100 | INFO     | [job] validate thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:37,450 | INFO     | [data] copytool_out thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:53:37,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 21:54:18] 2026-04-18 19:53:41,698 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 21:54:18] 2026-04-18 19:54:04,666 | INFO     | PID=918638 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 21:54:18] 2026-04-18 19:54:04,666 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 21:54:18] 2026-04-18 19:54:04,666 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 21:54:18] 2026-04-18 19:54:04,666 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 21:54:18] 2026-04-18 19:54:12,866 | INFO     | [monitor] cgroup control has ended
[2026-04-18 21:54:18] 2026-04-18 19:54:13,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289317734208)>', '<ExcThread(monitor, started 140288395835136)>']
[2026-04-18 21:54:18] 2026-04-18 19:54:13,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 21:54:18] 2026-04-18 19:54:13,715 | INFO     | [monitor] control thread has ended
[2026-04-18 21:54:18] 2026-04-18 19:54:18,456 | INFO     | all workflow threads have been joined
[2026-04-18 21:54:18] 2026-04-18 19:54:18,457 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 21:54:18] 2026-04-18 19:54:18,458 | INFO     | traces error code: 0
[2026-04-18 21:54:18] 2026-04-18 19:54:18,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 21:54:18] 2026-04-18 19:54:18,537 [wrapper] ==== pilot stdout END ====
[2026-04-18 21:54:18] 2026-04-18 19:54:18,541 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 21:54:18] 2026-04-18 19:54:18,546 [wrapper] pilotpid: 918638
[2026-04-18 21:54:18] 2026-04-18 19:54:18,550 [wrapper] Pilot exit status: 0
[2026-04-18 21:54:18] 2026-04-18 19:54:18,562 [wrapper] pandaids: 7098078340
[2026-04-18 21:54:18] 2026-04-18 19:54:18,584 [wrapper] cleanup supervisor_pilot  928285 918639
[2026-04-18 21:54:18] 2026-04-18 19:54:18,588 [wrapper] Test setup, not cleaning
[2026-04-18 21:54:18] 2026-04-18 19:54:18,592 [wrapper] apfmon messages muted
[2026-04-18 21:54:18] 2026-04-18 19:54:18,596 [wrapper] ==== wrapper stdout END ====
[2026-04-18 21:54:18] 2026-04-18 19:54:18,600 [wrapper] ==== wrapper stderr END ====
[2026-04-18 21:54:18]  *** Error codes and diagnostics ***
[2026-04-18 21:54:18]     "exeErrorCode": 0,
[2026-04-18 21:54:18]     "pilotErrorCode": 0,
[2026-04-18 21:54:18]  *** Listing of results directory ***
[2026-04-18 21:54:18] total 467160
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-18 21:54:18] -rwx------ 1 boinc boinc     36322 Apr 18 11:23 runpilot2-wrapper.sh
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc      5094 Apr 18 11:42 queuedata.json
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc       100 Apr 18 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 21:54:18] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 20:40 run_atlas
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc       105 Apr 18 20:40 job.xml
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc 282336078 Apr 18 20:40 EVNT.49539591._000508.pool.root.1
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc    656943 Apr 18 20:40 input.tar.gz
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc     15665 Apr 18 20:40 start_atlas.sh
[2026-04-18 21:54:18] drwxrwx--x 2 boinc boinc      4096 Apr 18 20:40 shared
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc         0 Apr 18 20:40 boinc_setup_complete
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc      6293 Apr 18 20:40 init_data.xml
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc         0 Apr 18 20:40 boinc_lockfile
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc      2606 Apr 18 20:40 pandaJob.out
[2026-04-18 21:54:18] -rw------- 1 boinc boinc    997676 Apr 18 20:41 agis_schedconf.cvmfs.json
[2026-04-18 21:54:18] -rw------- 1 boinc boinc   1512404 Apr 18 20:41 agis_ddmendpoints.agis.ALL.json
[2026-04-18 21:54:18] -rw------- 1 boinc boinc       428 Apr 18 20:41 workernode_map.json
[2026-04-18 21:54:18] drwx------ 5 boinc boinc      4096 Apr 18 20:41 pilot3
[2026-04-18 21:54:18] -rw------- 1 boinc boinc 190624565 Apr 18 21:53 HITS.49545114._030977.pool.root.1
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc       487 Apr 18 21:53 boinc_task_state.xml
[2026-04-18 21:54:18] -rw------- 1 boinc boinc      1019 Apr 18 21:53 memory_monitor_summary.json
[2026-04-18 21:54:18] -rw------- 1 boinc boinc        95 Apr 18 21:53 pilot_heartbeat.json
[2026-04-18 21:54:18] -rw------- 1 boinc boinc    247605 Apr 18 21:53 log.49545114._030977.job.log.tgz.1
[2026-04-18 21:54:18] -rw------- 1 boinc boinc      6333 Apr 18 21:53 heartbeat_new.json
[2026-04-18 21:54:18] -rw------- 1 boinc boinc      6224 Apr 18 21:53 heartbeat.json
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc      8192 Apr 18 21:54 boinc_mmap_file
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc        27 Apr 18 21:54 wrapper_checkpoint.txt
[2026-04-18 21:54:18] -rw------- 1 boinc boinc      4932 Apr 18 21:54 pilotlog.txt
[2026-04-18 21:54:18] -rw------- 1 boinc boinc    432477 Apr 18 21:54 log.49545114._030977.job.log.1
[2026-04-18 21:54:18] -rw------- 1 boinc boinc       357 Apr 18 21:54 output.list
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc       410 Apr 18 21:54 runtime_log
[2026-04-18 21:54:18] -rw------- 1 boinc boinc    696320 Apr 18 21:54 result.tar.gz
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc      8523 Apr 18 21:54 runtime_log.err
[2026-04-18 21:54:18] -rw------- 1 boinc boinc       658 Apr 18 21:54 4d79b5d0c4f8.diag
[2026-04-18 21:54:18] -rw-r--r-- 1 boinc boinc     12736 Apr 18 21:54 stderr.txt
[2026-04-18 21:54:18] HITS file was successfully produced:
[2026-04-18 21:54:18] -rw------- 1 boinc boinc 190624565 Apr 18 21:53 shared/HITS.pool.root.1
[2026-04-18 21:54:18]  *** Contents of shared directory: ***
[2026-04-18 21:54:18] total 463228
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc 282336078 Apr 18 20:40 ATLAS.root_0
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc    656943 Apr 18 20:40 input.tar.gz
[2026-04-18 21:54:18] -rw-r--r-- 2 boinc boinc     15665 Apr 18 20:40 start_atlas.sh
[2026-04-18 21:54:18] -rw------- 1 boinc boinc 190624565 Apr 18 21:53 HITS.pool.root.1
[2026-04-18 21:54:18] -rw------- 1 boinc boinc    696320 Apr 18 21:54 result.tar.gz
21:54:20 (914519): run_atlas exited; CPU time 15720.690362
21:54:20 (914519): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN