Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:32:44 (2661008): wrapper (7.7.26015): starting
21:32:44 (2661008): wrapper: running run_atlas (--nthreads 3)
[2026-04-18 21:32:44] Arguments: --nthreads 3
[2026-04-18 21:32:44] Threads: 3
[2026-04-18 21:32:44] Checking for CVMFS
[2026-04-18 21:32:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 21:32:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 21:32:45] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 21:32:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 21:32:45] 2.9.2.0 2545772 719 64752 158595 2 50 26882129 36864001 0 130560 0 386544 99.983 28036 19619 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 21:32:45] CVMFS is ok
[2026-04-18 21:32:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 21:32:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 21:32:45] Further information can be found at the LHC@home message board.
[2026-04-18 21:32:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 21:32:45] Checking for apptainer binary...
[2026-04-18 21:32:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 21:32:45] Running /usr/bin/apptainer --version
[2026-04-18 21:32:45] apptainer version 1.4.1-1.1
[2026-04-18 21:32:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 21:32:45] cosA121a
[2026-04-18 21:32:45] apptainer works
[2026-04-18 21:32:45] Set ATHENA_PROC_NUMBER=3
[2026-04-18 21:32:45] Set ATHENA_CORE_NUMBER=3
[2026-04-18 21:32:45] Starting ATLAS job with PandaID=7098003608
[2026-04-18 21:32:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 22:58:09]  *** The last 200 lines of the pilot log: ***
[2026-04-18 22:58:09] 2026-04-18 20:57:03,814 | INFO     | --- collectZombieJob: --- 10, [2669490]
[2026-04-18 22:58:09] 2026-04-18 20:57:03,814 | INFO     | zombie collector waiting for pid 2669490
[2026-04-18 22:58:09] 2026-04-18 20:57:03,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 22:58:09] 2026-04-18 20:57:03,814 | INFO     | collected zombie processes
[2026-04-18 22:58:09] 2026-04-18 20:57:03,814 | INFO     | will attempt to kill all subprocesses of pid=2669490
[2026-04-18 22:58:09] 2026-04-18 20:57:03,880 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 22:58:09] 2026-04-18 20:57:03,940 | INFO     | process IDs to be killed: [2669490] (in reverse order)
[2026-04-18 22:58:09] 2026-04-18 20:57:03,973 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 22:58:09] 2026-04-18 20:57:03,973 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 22:58:09] 2026-04-18 20:57:03,979 | INFO     | did not find any defunct processes belonging to 2669490
[2026-04-18 22:58:09] 2026-04-18 20:57:03,982 | INFO     | number of running child processes to parent process 2669490: 1
[2026-04-18 22:58:09] 2026-04-18 20:57:03,982 | INFO     | maximum number of monitored processes: 6
[2026-04-18 22:58:09] 2026-04-18 20:57:03,982 | INFO     | aborting job monitoring since job object (job id=7098003608) has expired
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | did not find any defunct processes belonging to 2669490
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | Ready for new job
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | **************************************
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | **************************************
[2026-04-18 22:58:09] 2026-04-18 20:57:03,983 | INFO     | 
[2026-04-18 22:58:09] 2026-04-18 20:57:03,984 | INFO     | architecture information:
[2026-04-18 22:58:09] 2026-04-18 20:57:03,984 | INFO     | executing command: cat /etc/os-release
[2026-04-18 22:58:09] 2026-04-18 20:57:03,994 | INFO     | cat /etc/os-release:
[2026-04-18 22:58:09] NAME="CentOS Linux"
[2026-04-18 22:58:09] VERSION="7 (Core)"
[2026-04-18 22:58:09] ID="centos"
[2026-04-18 22:58:09] ID_LIKE="rhel fedora"
[2026-04-18 22:58:09] VERSION_ID="7"
[2026-04-18 22:58:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 22:58:09] ANSI_COLOR="0;31"
[2026-04-18 22:58:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 22:58:09] HOME_URL="https://www.centos.org/"
[2026-04-18 22:58:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 22:58:09] 
[2026-04-18 22:58:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 22:58:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 22:58:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 22:58:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 22:58:09] 
[2026-04-18 22:58:09] 2026-04-18 20:57:03,994 | INFO     | **************************************
[2026-04-18 22:58:09] 2026-04-18 20:57:04,497 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 22:58:09] 2026-04-18 20:57:04,509 | INFO     | sufficient remaining disk space (325159223296 B)
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | INFO     | update_server=False
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 22:58:09] 2026-04-18 20:57:04,510 | INFO     | will abort loop
[2026-04-18 22:58:09] 2026-04-18 20:57:04,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 22:58:09] 2026-04-18 20:57:04,511 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 22:58:09] 2026-04-18 20:57:04,678 | INFO     | all data control threads have been joined
[2026-04-18 22:58:09] 2026-04-18 20:57:05,134 | INFO     | all payload control threads have been joined
[2026-04-18 22:58:09] 2026-04-18 20:57:05,289 | INFO     | all job control threads have been joined
[2026-04-18 22:58:09] 2026-04-18 20:57:05,515 | INFO     | [job] retrieve thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:05,516 | INFO     | [job] job monitor thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:05,557 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:05,583 | INFO     | [data] copytool_in thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:05,684 | INFO     | [data] control thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:05,709 | INFO     | [payload] failed_post thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,140 | INFO     | [payload] control thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,273 | INFO     | [payload] validate_post thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,294 | INFO     | [job] control thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,517 | INFO     | [data] copytool_out thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,874 | INFO     | [job] validate thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,936 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:06,966 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:07,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 22:58:09] 2026-04-18 20:57:08,389 | INFO     | [job] queue monitor thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:08,517 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:57:14,931 | INFO     | job.realtimelogging is not enabled
[2026-04-18 22:58:09] 2026-04-18 20:57:15,937 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 22:58:09] 2026-04-18 20:58:03,560 | INFO     | [monitor] cgroup control has ended
[2026-04-18 22:58:09] 2026-04-18 20:58:03,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373691746112)>', '<ExcThread(monitor, started 140373062043392)>']
[2026-04-18 22:58:09] 2026-04-18 20:58:04,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 22:58:09] 2026-04-18 20:58:04,823 | INFO     | [monitor] control thread has ended
[2026-04-18 22:58:09] 2026-04-18 20:58:08,979 | INFO     | all workflow threads have been joined
[2026-04-18 22:58:09] 2026-04-18 20:58:08,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 22:58:09] 2026-04-18 20:58:08,979 | INFO     | traces error code: 0
[2026-04-18 22:58:09] 2026-04-18 20:58:08,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 22:58:09] 2026-04-18 20:58:09,032 [wrapper] ==== pilot stdout END ====
[2026-04-18 22:58:09] 2026-04-18 20:58:09,035 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 22:58:09] 2026-04-18 20:58:09,037 [wrapper] pilotpid: 2665053
[2026-04-18 22:58:09] 2026-04-18 20:58:09,039 [wrapper] Pilot exit status: 0
[2026-04-18 22:58:09] 2026-04-18 20:58:09,047 [wrapper] pandaids: 7098003608
[2026-04-18 22:58:09] 2026-04-18 20:58:09,069 [wrapper] cleanup supervisor_pilot 2675971 2665054
[2026-04-18 22:58:09] 2026-04-18 20:58:09,072 [wrapper] Test setup, not cleaning
[2026-04-18 22:58:09] 2026-04-18 20:58:09,074 [wrapper] apfmon messages muted
[2026-04-18 22:58:09] 2026-04-18 20:58:09,076 [wrapper] ==== wrapper stdout END ====
[2026-04-18 22:58:09] 2026-04-18 20:58:09,078 [wrapper] ==== wrapper stderr END ====
[2026-04-18 22:58:09]  *** Error codes and diagnostics ***
[2026-04-18 22:58:09]     "exeErrorCode": 0,
[2026-04-18 22:58:09]     "pilotErrorCode": 0,
[2026-04-18 22:58:09]  *** Listing of results directory ***
[2026-04-18 22:58:09] total 460520
[2026-04-18 22:58:09] -rwx------ 1 boinc boinc     36322 Apr 18 10:53 runpilot2-wrapper.sh
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc      5094 Apr 18 11:06 queuedata.json
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc       100 Apr 18 21:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 22:58:09] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 21:32 run_atlas
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc       105 Apr 18 21:32 job.xml
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc 278249007 Apr 18 21:32 EVNT.49539591._000459.pool.root.1
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc    656948 Apr 18 21:32 input.tar.gz
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc     15665 Apr 18 21:32 start_atlas.sh
[2026-04-18 22:58:09] drwxrwx--x 2 boinc boinc      4096 Apr 18 21:32 shared
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc         0 Apr 18 21:32 boinc_setup_complete
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc      6356 Apr 18 21:32 init_data.xml
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc         0 Apr 18 21:32 boinc_lockfile
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc      2606 Apr 18 21:32 pandaJob.out
[2026-04-18 22:58:09] -rw------- 1 boinc boinc    997676 Apr 18 21:32 agis_schedconf.cvmfs.json
[2026-04-18 22:58:09] -rw------- 1 boinc boinc   1512404 Apr 18 21:32 agis_ddmendpoints.agis.ALL.json
[2026-04-18 22:58:09] -rw------- 1 boinc boinc       428 Apr 18 21:32 workernode_map.json
[2026-04-18 22:58:09] drwx------ 5 boinc boinc      4096 Apr 18 21:32 pilot3
[2026-04-18 22:58:09] -rw------- 1 boinc boinc        95 Apr 18 22:56 pilot_heartbeat.json
[2026-04-18 22:58:09] -rw------- 1 boinc boinc 187815353 Apr 18 22:56 HITS.49545114._030193.pool.root.1
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc       487 Apr 18 22:56 boinc_task_state.xml
[2026-04-18 22:58:09] -rw------- 1 boinc boinc      1022 Apr 18 22:56 memory_monitor_summary.json
[2026-04-18 22:58:09] -rw------- 1 boinc boinc    238002 Apr 18 22:57 log.49545114._030193.job.log.tgz.1
[2026-04-18 22:58:09] -rw------- 1 boinc boinc      6338 Apr 18 22:57 heartbeat_new.json
[2026-04-18 22:58:09] -rw------- 1 boinc boinc      6229 Apr 18 22:57 heartbeat.json
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc      8192 Apr 18 22:58 boinc_mmap_file
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc        27 Apr 18 22:58 wrapper_checkpoint.txt
[2026-04-18 22:58:09] -rw------- 1 boinc boinc      4625 Apr 18 22:58 pilotlog.txt
[2026-04-18 22:58:09] -rw------- 1 boinc boinc    491186 Apr 18 22:58 log.49545114._030193.job.log.1
[2026-04-18 22:58:09] -rw------- 1 boinc boinc       357 Apr 18 22:58 output.list
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc       410 Apr 18 22:58 runtime_log
[2026-04-18 22:58:09] -rw------- 1 boinc boinc    747520 Apr 18 22:58 result.tar.gz
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc      8528 Apr 18 22:58 runtime_log.err
[2026-04-18 22:58:09] -rw------- 1 boinc boinc       659 Apr 18 22:58 4695411b0bc2.diag
[2026-04-18 22:58:09] -rw-r--r-- 1 boinc boinc     10907 Apr 18 22:58 stderr.txt
[2026-04-18 22:58:09] HITS file was successfully produced:
[2026-04-18 22:58:09] -rw------- 1 boinc boinc 187815353 Apr 18 22:56 shared/HITS.pool.root.1
[2026-04-18 22:58:09]  *** Contents of shared directory: ***
[2026-04-18 22:58:09] total 456544
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc 278249007 Apr 18 21:32 ATLAS.root_0
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc    656948 Apr 18 21:32 input.tar.gz
[2026-04-18 22:58:09] -rw-r--r-- 2 boinc boinc     15665 Apr 18 21:32 start_atlas.sh
[2026-04-18 22:58:09] -rw------- 1 boinc boinc 187815353 Apr 18 22:56 HITS.pool.root.1
[2026-04-18 22:58:09] -rw------- 1 boinc boinc    747520 Apr 18 22:58 result.tar.gz
22:58:10 (2661008): run_atlas exited; CPU time 14200.817787
22:58:10 (2661008): called boinc_finish(0)

</stderr_txt>
]]>

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