Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:37:08 (661): wrapper (7.7.26015): starting
17:37:08 (661): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 17:37:08] Arguments: --nthreads 8
[2026-04-18 17:37:08] Threads: 8
[2026-04-18 17:37:08] Checking for CVMFS
[2026-04-18 17:37:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 17:37:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 17:37:10] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 17:37:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 17:37:11] 2.11.2.0 13298 4239 96724 158589 0 53 25034772 25165825 1060 130560 0 1039666 99.833 3555175 33985 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 17:37:11] CVMFS is ok
[2026-04-18 17:37:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 17:37:11] Checking for apptainer binary...
[2026-04-18 17:37:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 17:37:11] Running /usr/bin/apptainer --version
[2026-04-18 17:37:11] apptainer version 1.3.2-1.el7
[2026-04-18 17:37:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 17:37:17] cg-vwn457.simple-grid.lan
[2026-04-18 17:37:17] apptainer works
[2026-04-18 17:37:17] Set ATHENA_PROC_NUMBER=8
[2026-04-18 17:37:17] Set ATHENA_CORE_NUMBER=8
[2026-04-18 17:37:17] Starting ATLAS job with PandaID=7097799883
[2026-04-18 17:37:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 20:50:42]  *** The last 200 lines of the pilot log: ***
[2026-04-18 20:50:42] 2026-04-18 18:50:08,645 | INFO     | sum of square deviations: 1577789583.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,646 | INFO     | sum of deviations: 101545411741.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,646 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,647 | INFO     | mean y: 2380213.3488372094
[2026-04-18 20:50:42] 2026-04-18 18:50:08,647 | INFO     | intersect: 2380213.3488372094
[2026-04-18 20:50:42] 2026-04-18 18:50:08,647 | INFO     | chi2: 8.333743921878671
[2026-04-18 20:50:42] 2026-04-18 18:50:08,648 | INFO     | sum of square deviations: 1444149868.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,649 | INFO     | sum of deviations: 109848090326.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,649 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,649 | INFO     | mean y: 2389370.1317365267
[2026-04-18 20:50:42] 2026-04-18 18:50:08,649 | INFO     | intersect: 2389370.1317365267
[2026-04-18 20:50:42] 2026-04-18 18:50:08,650 | INFO     | chi2: 7.601435806444856
[2026-04-18 20:50:42] 2026-04-18 18:50:08,650 | INFO     | current chi2=7.601435806444856 (change=8.787264431191346 %)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,650 | INFO     | right removable region: 166
[2026-04-18 20:50:42] 2026-04-18 18:50:08,650 | INFO     | sum of square deviations: 1444149868.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,651 | INFO     | sum of deviations: 41856443505.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,652 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,652 | INFO     | mean y: 2448282.958083832
[2026-04-18 20:50:42] 2026-04-18 18:50:08,652 | INFO     | intersect: 2448282.958083832
[2026-04-18 20:50:42] 2026-04-18 18:50:08,652 | INFO     | chi2: 3.0437543421835302
[2026-04-18 20:50:42] 2026-04-18 18:50:08,652 | INFO     | current chi2=3.0437543421835302 (change=63.476747417295506 %)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,653 | INFO     | sum of square deviations: 1318277740.5
[2026-04-18 20:50:42] 2026-04-18 18:50:08,654 | INFO     | sum of deviations: 3377167369.5
[2026-04-18 20:50:42] 2026-04-18 18:50:08,654 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,654 | INFO     | mean y: 2494692.660493827
[2026-04-18 20:50:42] 2026-04-18 18:50:08,654 | INFO     | intersect: 2494692.660493827
[2026-04-18 20:50:42] 2026-04-18 18:50:08,654 | INFO     | chi2: 0.953800886694477
[2026-04-18 20:50:42] 2026-04-18 18:50:08,655 | INFO     | current chi2=0.953800886694477 (change=68.66367060325115 %)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,655 | INFO     | sum of square deviations: 1199940638.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,656 | INFO     | sum of deviations: -5793696612.999998
[2026-04-18 20:50:42] 2026-04-18 18:50:08,656 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,656 | INFO     | mean y: 2506477.949044586
[2026-04-18 20:50:42] 2026-04-18 18:50:08,656 | INFO     | intersect: 2506477.949044586
[2026-04-18 20:50:42] 2026-04-18 18:50:08,657 | INFO     | chi2: 0.8430847803498518
[2026-04-18 20:50:42] 2026-04-18 18:50:08,657 | INFO     | current chi2=0.8430847803498518 (change=11.607884610835972 %)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,657 | INFO     | left removable region: 15
[2026-04-18 20:50:42] 2026-04-18 18:50:08,657 | INFO     | sum of square deviations: 1067554900.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,658 | INFO     | sum of deviations: 4771247126.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,658 | INFO     | mean x (centered): 0.0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,658 | INFO     | mean y: 2520604.344370861
[2026-04-18 20:50:42] 2026-04-18 18:50:08,659 | INFO     | intersect: 2520604.344370861
[2026-04-18 20:50:42] 2026-04-18 18:50:08,659 | INFO     | chi2: 0.001090888913402694
[2026-04-18 20:50:42] 2026-04-18 18:50:08,659 | INFO     | current memory leak: 4.47 B/s (using 151 data points, chi2=0.00)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | could have reported an average CPU frequency of 2250 MHz (10 samples)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | ..............................
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | . Timing measurements:
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | . get job = 1 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | . initial setup = 178 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | . payload setup = 421 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,660 | INFO     | . stage-in = 0 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,661 | INFO     | . payload execution = 10589 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,661 | INFO     | . stage-out = 1 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,661 | INFO     | . log creation = 0 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,661 | INFO     | ..............................
[2026-04-18 20:50:42] 2026-04-18 18:50:08,771 | INFO     | 
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | job summary report
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | --------------------------------------------------
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | PanDA job id: 7097799883
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | task id: 49545114
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | errors: (none)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | pilot state: finished 
[2026-04-18 20:50:42] 2026-04-18 18:50:08,772 | INFO     | transexitcode: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | exeerrorcode: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | exeerrordiag: 
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | exitcode: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | exitmsg: OK
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | cpuconsumptiontime: 54794 s
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | nevents: 400
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | neventsw: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | pid: 9133
[2026-04-18 20:50:42] 2026-04-18 18:50:08,773 | INFO     | pgrp: 9133
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | corecount: 8
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | event service: False
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | sizes: {0: 2280973, 1: 2281659, 2: 2281687, 3: 2259233, 4: 2283516, 14: 2283544, 11013: 2312774, 11015: 2321830, 11016: 2321968}
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | --------------------------------------------------
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | 
[2026-04-18 20:50:42] 2026-04-18 18:50:08,774 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-04-18 20:50:42] 2026-04-18 18:50:08,801 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,801 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,804 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 20:50:42] 2026-04-18 18:50:08,804 | INFO     | job 7097799883 has completed (purged errors)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,804 | INFO     | overall cleanup function is called
[2026-04-18 20:50:42] 2026-04-18 18:50:08,916 | WARNING  | process 9133 can no longer be monitored (due to stat problems) - aborting
[2026-04-18 20:50:42] 2026-04-18 18:50:08,962 | INFO     | using path: /var/lib/boinc/slots/16/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,963 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/16/PanDA_Pilot-7097799883/payload.stdout) since it has not been created yet
[2026-04-18 20:50:42] 2026-04-18 18:50:08,964 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-04-18 20:50:42] 2026-04-18 18:50:08,988 | INFO     | sufficient remaining disk space (495687041024 B)
[2026-04-18 20:50:42] 2026-04-18 18:50:08,989 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-18 20:50:42] 2026-04-18 18:50:08,989 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/16/PanDA_Pilot-7097799883/HITS.49545114._029152.pool.root.1 since it does not exist
[2026-04-18 20:50:42] 2026-04-18 18:50:09,045 | INFO     | number of running child processes to parent process 9133: 1
[2026-04-18 20:50:42] 2026-04-18 18:50:09,045 | INFO     | maximum number of monitored processes: 8
[2026-04-18 20:50:42] 2026-04-18 18:50:09,045 | INFO     | aborting job monitoring since job object (job id=7097799883) has expired
[2026-04-18 20:50:42] 2026-04-18 18:50:09,810 | INFO     | --- collectZombieJob: --- 10, [9133]
[2026-04-18 20:50:42] 2026-04-18 18:50:09,811 | INFO     | zombie collector waiting for pid 9133
[2026-04-18 20:50:42] 2026-04-18 18:50:09,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 20:50:42] 2026-04-18 18:50:09,811 | INFO     | collected zombie processes
[2026-04-18 20:50:42] 2026-04-18 18:50:09,811 | INFO     | will attempt to kill all subprocesses of pid=9133
[2026-04-18 20:50:42] 2026-04-18 18:50:09,877 | INFO     | process IDs to be killed: [9133] (in reverse order)
[2026-04-18 20:50:42] 2026-04-18 18:50:09,924 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 20:50:42] 2026-04-18 18:50:09,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 20:50:42] 2026-04-18 18:50:09,927 | INFO     | did not find any defunct processes belonging to 9133
[2026-04-18 20:50:42] 2026-04-18 18:50:09,929 | INFO     | did not find any defunct processes belonging to 9133
[2026-04-18 20:50:42] 2026-04-18 18:50:09,929 | INFO     | Ready for new job
[2026-04-18 20:50:42] 2026-04-18 18:50:09,931 | INFO     | **************************************
[2026-04-18 20:50:42] 2026-04-18 18:50:09,931 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 20:50:42] 2026-04-18 18:50:09,931 | INFO     | **************************************
[2026-04-18 20:50:42] 2026-04-18 18:50:09,931 | INFO     | 
[2026-04-18 20:50:42] 2026-04-18 18:50:09,932 | INFO     | pilot is running in a VM
[2026-04-18 20:50:42] 2026-04-18 18:50:09,932 | INFO     | architecture information:
[2026-04-18 20:50:42] 2026-04-18 18:50:09,933 | INFO     | executing command: cat /etc/os-release
[2026-04-18 20:50:42] 2026-04-18 18:50:09,951 | INFO     | cat /etc/os-release:
[2026-04-18 20:50:42] NAME="CentOS Linux"
[2026-04-18 20:50:42] VERSION="7 (Core)"
[2026-04-18 20:50:42] ID="centos"
[2026-04-18 20:50:42] ID_LIKE="rhel fedora"
[2026-04-18 20:50:42] VERSION_ID="7"
[2026-04-18 20:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 20:50:42] ANSI_COLOR="0;31"
[2026-04-18 20:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 20:50:42] HOME_URL="https://www.centos.org/"
[2026-04-18 20:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 20:50:42] 
[2026-04-18 20:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 20:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 20:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 20:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 20:50:42] 
[2026-04-18 20:50:42] 2026-04-18 18:50:09,951 | INFO     | **************************************
[2026-04-18 20:50:42] 2026-04-18 18:50:10,452 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-04-18 20:50:42] 2026-04-18 18:50:10,478 | INFO     | sufficient remaining disk space (495688089600 B)
[2026-04-18 20:50:42] 2026-04-18 18:50:10,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 20:50:42] 2026-04-18 18:50:10,479 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 20:50:42] 2026-04-18 18:50:10,479 | INFO     | update_server=False
[2026-04-18 20:50:42] 2026-04-18 18:50:10,479 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 20:50:42] 2026-04-18 18:50:10,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 20:50:42] 2026-04-18 18:50:10,480 | INFO     | aborting loop
[2026-04-18 20:50:42] 2026-04-18 18:50:10,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 20:50:42] 2026-04-18 18:50:10,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 20:50:42] 2026-04-18 18:50:10,685 | INFO     | all job control threads have been joined
[2026-04-18 20:50:42] 2026-04-18 18:50:10,797 | INFO     | all payload control threads have been joined
[2026-04-18 20:50:42] 2026-04-18 18:50:11,442 | INFO     | all data control threads have been joined
[2026-04-18 20:50:42] 2026-04-18 18:50:11,485 | INFO     | [job] retrieve thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:11,486 | INFO     | [job] job monitor thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:11,487 | INFO     | [job] queue monitor thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:11,691 | INFO     | [job] control thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:11,798 | INFO     | [payload] validate_post thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:11,803 | INFO     | [payload] control thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,293 | INFO     | [job] validate thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,449 | INFO     | [data] control thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,487 | INFO     | [data] copytool_out thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,576 | INFO     | [payload] failed_post thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,641 | INFO     | [data] copytool_in thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,706 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,783 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:12,983 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:13,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 20:50:42] 2026-04-18 18:50:17,966 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:21,023 | INFO     | job.realtimelogging is not enabled
[2026-04-18 20:50:42] 2026-04-18 18:50:22,029 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 20:50:42] 2026-04-18 18:50:35,677 | INFO     | [monitor] cgroup control has ended
[2026-04-18 20:50:42] 2026-04-18 18:50:36,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109503354688)>', '<ExcThread(monitor, started 140109055772416)>']
[2026-04-18 20:50:42] 2026-04-18 18:50:40,610 | INFO     | PID=4679 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-18 20:50:42] 2026-04-18 18:50:40,610 | INFO     | .. there are 2 such processes running
[2026-04-18 20:50:42] 2026-04-18 18:50:40,611 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 20:50:42] 2026-04-18 18:50:40,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 20:50:42] 2026-04-18 18:50:40,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 20:50:42] 2026-04-18 18:50:40,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 20:50:42] 2026-04-18 18:50:40,612 | INFO     | [monitor] control thread has ended
[2026-04-18 20:50:42] 2026-04-18 18:50:41,698 | INFO     | all workflow threads have been joined
[2026-04-18 20:50:42] 2026-04-18 18:50:41,698 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 20:50:42] 2026-04-18 18:50:41,698 | INFO     | traces error code: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:41,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 20:50:42] 2026-04-18 18:50:41,829 [wrapper] ==== pilot stdout END ====
[2026-04-18 20:50:42] 2026-04-18 18:50:41,833 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 20:50:42] 2026-04-18 18:50:41,837 [wrapper] pilotpid: 4679
[2026-04-18 20:50:42] 2026-04-18 18:50:41,841 [wrapper] Pilot exit status: 0
[2026-04-18 20:50:42] 2026-04-18 18:50:41,858 [wrapper] pandaids: 7097799883
[2026-04-18 20:50:42] 2026-04-18 18:50:41,890 [wrapper] cleanup supervisor_pilot 30963 4680
[2026-04-18 20:50:42] 2026-04-18 18:50:41,895 [wrapper] Test setup, not cleaning
[2026-04-18 20:50:42] 2026-04-18 18:50:41,905 [wrapper] apfmon messages muted
[2026-04-18 20:50:42] 2026-04-18 18:50:41,910 [wrapper] ==== wrapper stdout END ====
[2026-04-18 20:50:42] 2026-04-18 18:50:41,914 [wrapper] ==== wrapper stderr END ====
[2026-04-18 20:50:42]  *** Error codes and diagnostics ***
[2026-04-18 20:50:42]     "exeErrorCode": 0,
[2026-04-18 20:50:42]     "pilotErrorCode": 0,
[2026-04-18 20:50:42]  *** Listing of results directory ***
[2026-04-18 20:50:42] total 461828
[2026-04-18 20:50:42] -rwx------. 1 boinc boinc     36322 Apr 18 10:47 runpilot2-wrapper.sh
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc    644190 Apr 18 11:00 pilot3.tar.gz
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc      5094 Apr 18 11:06 queuedata.json
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc       100 Apr 18 17:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 20:50:42] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 17:37 run_atlas
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc       105 Apr 18 17:37 job.xml
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc      6307 Apr 18 17:37 init_data.xml
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc 279374247 Apr 18 17:37 EVNT.49539591._000457.pool.root.1
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc     15665 Apr 18 17:37 start_atlas.sh
[2026-04-18 20:50:42] drwxrwx--x. 2 boinc boinc        68 Apr 18 17:37 shared
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc    656950 Apr 18 17:37 input.tar.gz
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc         0 Apr 18 17:37 boinc_lockfile
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc      2606 Apr 18 17:37 pandaJob.out
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc       413 Apr 18 17:46 workernode_map.json
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc    997668 Apr 18 17:46 agis_schedconf.cvmfs.json
[2026-04-18 20:50:42] drwx------. 5 boinc boinc      4096 Apr 18 17:46 pilot3
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc 186666414 Apr 18 20:49 HITS.49545114._029152.pool.root.1
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc       489 Apr 18 20:49 boinc_task_state.xml
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc      1022 Apr 18 20:50 memory_monitor_summary.json
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc   1512404 Apr 18 20:50 agis_ddmendpoints.agis.ALL.json
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc    377502 Apr 18 20:50 log.49545114._029152.job.log.tgz.1
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc      6342 Apr 18 20:50 heartbeat_new.json
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc      6233 Apr 18 20:50 heartbeat.json
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc      8192 Apr 18 20:50 boinc_mmap_file
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc        28 Apr 18 20:50 wrapper_checkpoint.txt
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc        95 Apr 18 20:50 pilot_heartbeat.json
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc      4951 Apr 18 20:50 pilotlog.txt
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc   1036099 Apr 18 20:50 log.49545114._029152.job.log.1
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc       357 Apr 18 20:50 output.list
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc       410 Apr 18 20:50 runtime_log
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc   1433600 Apr 18 20:50 result.tar.gz
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc      8454 Apr 18 20:50 runtime_log.err
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc       655 Apr 18 20:50 452f39bd99a2.diag
[2026-04-18 20:50:42] -rw-r--r--. 1 boinc boinc     20877 Apr 18 20:50 stderr.txt
[2026-04-18 20:50:42] HITS file was successfully produced:
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc 186666414 Apr 18 20:49 shared/HITS.pool.root.1
[2026-04-18 20:50:42]  *** Contents of shared directory: ***
[2026-04-18 20:50:42] total 457180
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc 279374247 Apr 18 17:37 ATLAS.root_0
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc     15665 Apr 18 17:37 start_atlas.sh
[2026-04-18 20:50:42] -rw-r--r--. 2 boinc boinc    656950 Apr 18 17:37 input.tar.gz
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc 186666414 Apr 18 20:49 HITS.pool.root.1
[2026-04-18 20:50:42] -rw-------. 1 boinc boinc   1433600 Apr 18 20:50 result.tar.gz
20:50:43 (661): run_atlas exited; CPU time 54894.169848
20:50:43 (661): called boinc_finish(0)

</stderr_txt>
]]>

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