Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:22:46 (155715): wrapper (7.7.26015): starting
13:22:46 (155715): wrapper: running run_atlas (--nthreads 12)
[2026-04-18 13:22:46] Arguments: --nthreads 12
[2026-04-18 13:22:46] Threads: 12
[2026-04-18 13:22:46] Checking for CVMFS
[2026-04-18 13:22:46] No cvmfs_config command found, will try listing directly
[2026-04-18 13:22:46] CVMFS is ok
[2026-04-18 13:22:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 13:22:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 13:22:46] Further information can be found at the LHC@home message board.
[2026-04-18 13:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 13:22:46] Checking for apptainer binary...
[2026-04-18 13:22:46] which: no apptainer in ((null))
[2026-04-18 13:22:46] apptainer is not installed, using version from CVMFS
[2026-04-18 13:22:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 13:22:46] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/17/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-04-18 13:22:46] apptainer works
[2026-04-18 13:22:46] Set ATHENA_PROC_NUMBER=12
[2026-04-18 13:22:46] Set ATHENA_CORE_NUMBER=12
[2026-04-18 13:22:46] Starting ATLAS job with PandaID=7097694244
[2026-04-18 13:22:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 13:53:06]  *** The last 200 lines of the pilot log: ***
[2026-04-18 13:53:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-18 13:53:06]  is_altstaged=None
[2026-04-18 13:53:06]  is_tar=False
[2026-04-18 13:53:06]  lfn=log.49545114._028169.job.log.tgz.1
[2026-04-18 13:53:06]  mtime=0
[2026-04-18 13:53:06]  protocol_id=None
[2026-04-18 13:53:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-18 13:53:06]  replicas=None
[2026-04-18 13:53:06]  scope=mc23_13p6TeV
[2026-04-18 13:53:06]  status=None
[2026-04-18 13:53:06]  status_code=0
[2026-04-18 13:53:06]  storage_token=
[2026-04-18 13:53:06]  surl=/var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/log.49545114._028169.job.log.tgz.1
[2026-04-18 13:53:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/d4/log.49545114._028169.job.log.tgz.1
[2026-04-18 13:53:06]  workdir=None
[2026-04-18 13:53:06] ]
[2026-04-18 13:53:06] 2026-04-18 11:52:15,772 | INFO     | transferring file log.49545114._028169.job.log.tgz.1 from /var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/log.49545114._028169.job.log.tgz.1 to /var/lib/
[2026-04-18 13:53:06] 2026-04-18 11:52:15,773 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/log.49545114._028169.job.log.tgz.1 /var/lib/boinc/var/slot60/slots/17/
[2026-04-18 13:53:06] 2026-04-18 11:52:15,786 | INFO     | adding to output.list: log.49545114._028169.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/d4/log.49545114._028169.job.log.tg
[2026-04-18 13:53:06] 2026-04-18 11:52:15,786 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-18 13:53:06] 2026-04-18 11:52:15,786 | INFO     | summary of transferred files:
[2026-04-18 13:53:06] 2026-04-18 11:52:15,786 | INFO     |  -- lfn=log.49545114._028169.job.log.tgz.1, status_code=0, status=transferred
[2026-04-18 13:53:06] 2026-04-18 11:52:15,787 | INFO     | stage-out finished correctly
[2026-04-18 13:53:06] 2026-04-18 11:52:15,832 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-18 13:53:06] 2026-04-18 11:52:17,683 | WARNING  | process 166076 can no longer be monitored (due to stat problems) - aborting
[2026-04-18 13:53:06] 2026-04-18 11:52:17,684 | INFO     | using path: /var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,904 | INFO     | job 7097694244 has state=finished
[2026-04-18 13:53:06] 2026-04-18 11:52:17,904 | INFO     | preparing for final server update for job 7097694244 in state='finished'
[2026-04-18 13:53:06] 2026-04-18 11:52:17,904 | INFO     | reading metadata from: /var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/jobReport.json
[2026-04-18 13:53:06] 2026-04-18 11:52:17,906 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot60/slots/17/workernode_map.json
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | INFO     | this job has now completed (state=finished)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | INFO     | log transfer has been attempted: DONE
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | INFO     | job 7097694244 has finished - writing final server update
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1984442/.job.ad'
[2026-04-18 13:53:06] 2026-04-18 11:52:17,907 | INFO     | total number of processed events: 400 (read)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,929 | INFO     | using path: /var/lib/boinc/var/slot60/slots/17/PanDA_Pilot-7097694244/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,930 | INFO     | extracted standard info from prmon json
[2026-04-18 13:53:06] 2026-04-18 11:52:17,930 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 13:53:06] 2026-04-18 11:52:17,930 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 13:53:06] 2026-04-18 11:52:17,930 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 13:53:06] 2026-04-18 11:52:17,931 | INFO     | fitting pss+swap vs Time
[2026-04-18 13:53:06] 2026-04-18 11:52:17,931 | INFO     | sum of square deviations: 3294945.5
[2026-04-18 13:53:06] 2026-04-18 11:52:17,931 | INFO     | sum of deviations: -1617781.0
[2026-04-18 13:53:06] 2026-04-18 11:52:17,931 | INFO     | mean x (centered): 0.0
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | mean y: 2753305.0
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | intersect: 2753305.0
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | chi2: 6.658995229921658e-05
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | current memory leak: -0.49 B/s (using 22 data points, chi2=0.00)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | could have reported an average CPU frequency of 3675 MHz (4 samples)
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | ..............................
[2026-04-18 13:53:06] 2026-04-18 11:52:17,932 | INFO     | . Timing measurements:
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . get job = 0 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . initial setup = 4 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . payload setup = 6 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . stage-in = 0 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . payload execution = 1736 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . stage-out = 0 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | . log creation = 0 s
[2026-04-18 13:53:06] 2026-04-18 11:52:17,933 | INFO     | ..............................
[2026-04-18 13:53:06] 2026-04-18 11:52:18,099 | INFO     | number of running child processes to parent process 166076: 1
[2026-04-18 13:53:06] 2026-04-18 11:52:18,099 | INFO     | maximum number of monitored processes: 6
[2026-04-18 13:53:06] 2026-04-18 11:52:18,099 | INFO     | aborting job monitoring since job object (job id=7097694244) has expired
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | 
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | job summary report
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | --------------------------------------------------
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | PanDA job id: 7097694244
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | task id: 49545114
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | errors: (none)
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | pilot state: finished 
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | transexitcode: 0
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | exeerrorcode: 0
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | exeerrordiag: 
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | exitcode: 0
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | exitmsg: OK
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | cpuconsumptiontime: 17941 s
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | nevents: 400
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | neventsw: 0
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | pid: 166076
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | pgrp: 166076
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | corecount: 12
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | event service: False
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | sizes: {0: 2283442, 11: 2283442, 1746: 2308315, 1748: 2317393, 1750: 2317531}
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | --------------------------------------------------
[2026-04-18 13:53:06] 2026-04-18 11:52:18,426 | INFO     | 
[2026-04-18 13:53:06] 2026-04-18 11:52:18,427 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/17
[2026-04-18 13:53:06] 2026-04-18 11:52:18,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | job 7097694244 has completed (purged errors)
[2026-04-18 13:53:06] 2026-04-18 11:52:18,445 | INFO     | overall cleanup function is called
[2026-04-18 13:53:06] 2026-04-18 11:52:19,453 | INFO     | --- collectZombieJob: --- 10, [166076]
[2026-04-18 13:53:06] 2026-04-18 11:52:19,453 | INFO     | zombie collector waiting for pid 166076
[2026-04-18 13:53:06] 2026-04-18 11:52:19,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 13:53:06] 2026-04-18 11:52:19,454 | INFO     | collected zombie processes
[2026-04-18 13:53:06] 2026-04-18 11:52:19,454 | INFO     | will attempt to kill all subprocesses of pid=166076
[2026-04-18 13:53:06] 2026-04-18 11:52:19,815 | INFO     | process IDs to be killed: [166076] (in reverse order)
[2026-04-18 13:53:06] 2026-04-18 11:52:19,961 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 13:53:06] 2026-04-18 11:52:19,961 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 13:53:06] 2026-04-18 11:52:19,985 | INFO     | did not find any defunct processes belonging to 166076
[2026-04-18 13:53:06] 2026-04-18 11:52:20,008 | INFO     | did not find any defunct processes belonging to 166076
[2026-04-18 13:53:06] 2026-04-18 11:52:20,008 | INFO     | Ready for new job
[2026-04-18 13:53:06] 2026-04-18 11:52:20,009 | INFO     | **************************************
[2026-04-18 13:53:06] 2026-04-18 11:52:20,009 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 13:53:06] 2026-04-18 11:52:20,009 | INFO     | **************************************
[2026-04-18 13:53:06] 2026-04-18 11:52:20,009 | INFO     | 
[2026-04-18 13:53:06] 2026-04-18 11:52:20,015 | INFO     | architecture information:
[2026-04-18 13:53:06] 2026-04-18 11:52:20,015 | INFO     | executing command: cat /etc/os-release
[2026-04-18 13:53:06] 2026-04-18 11:52:20,029 | INFO     | cat /etc/os-release:
[2026-04-18 13:53:06] NAME="CentOS Linux"
[2026-04-18 13:53:06] VERSION="7 (Core)"
[2026-04-18 13:53:06] ID="centos"
[2026-04-18 13:53:06] ID_LIKE="rhel fedora"
[2026-04-18 13:53:06] VERSION_ID="7"
[2026-04-18 13:53:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 13:53:06] ANSI_COLOR="0;31"
[2026-04-18 13:53:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 13:53:06] HOME_URL="https://www.centos.org/"
[2026-04-18 13:53:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 13:53:06] 
[2026-04-18 13:53:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 13:53:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 13:53:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 13:53:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 13:53:06] 
[2026-04-18 13:53:06] 2026-04-18 11:52:20,029 | INFO     | **************************************
[2026-04-18 13:53:06] 2026-04-18 11:52:20,531 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/17
[2026-04-18 13:53:06] 2026-04-18 11:52:20,546 | INFO     | sufficient remaining disk space (178045059072 B)
[2026-04-18 13:53:06] 2026-04-18 11:52:20,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 13:53:06] 2026-04-18 11:52:20,546 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 13:53:06] 2026-04-18 11:52:20,546 | INFO     | update_server=False
[2026-04-18 13:53:06] 2026-04-18 11:52:20,546 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 13:53:06] 2026-04-18 11:52:20,602 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-18 13:53:06] 2026-04-18 11:52:20,602 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-18 13:53:06] 2026-04-18 11:52:20,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 13:53:06] 2026-04-18 11:52:20,602 | INFO     | will abort loop
[2026-04-18 13:53:06] 2026-04-18 11:52:20,761 | INFO     | all data control threads have been joined
[2026-04-18 13:53:06] 2026-04-18 11:52:21,340 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 13:53:06] 2026-04-18 11:52:21,551 | INFO     | [job] retrieve thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:21,565 | INFO     | all payload control threads have been joined
[2026-04-18 13:53:06] 2026-04-18 11:52:21,608 | INFO     | [job] job monitor thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:21,655 | INFO     | all job control threads have been joined
[2026-04-18 13:53:06] 2026-04-18 11:52:21,762 | INFO     | [data] control thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:21,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 13:53:06] 2026-04-18 11:52:22,328 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,541 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,570 | INFO     | [payload] control thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,593 | INFO     | [job] validate thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,640 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,661 | INFO     | [job] control thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,717 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,881 | INFO     | [data] copytool_in thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,936 | INFO     | [payload] validate_post thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:22,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 13:53:06] 2026-04-18 11:52:23,034 | INFO     | [payload] failed_post thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:23,345 | INFO     | [data] copytool_out thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:23,996 | INFO     | [job] queue monitor thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:25,892 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 13:53:06] 2026-04-18 11:52:51,549 | INFO     | PID=160261 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 13:53:06] 2026-04-18 11:52:51,549 | INFO     | .. there are 16 such processes running
[2026-04-18 13:53:06] 2026-04-18 11:52:51,550 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 13:53:06] 2026-04-18 11:52:51,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 13:53:06] 2026-04-18 11:52:51,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 13:53:06] 2026-04-18 11:52:52,141 [wrapper] supervise_pilot (15 min periods counter: 3)
[2026-04-18 13:53:06] 2026-04-18 11:52:59,236 | INFO     | [monitor] cgroup control has ended
[2026-04-18 13:53:06] 2026-04-18 11:53:00,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22599677671232)>', '<ExcThread(monitor, started 22599365003008)>']
[2026-04-18 13:53:06] 2026-04-18 11:53:01,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 13:53:06] 2026-04-18 11:53:01,601 | INFO     | [monitor] control thread has ended
[2026-04-18 13:53:06] 2026-04-18 11:53:05,883 | INFO     | all workflow threads have been joined
[2026-04-18 13:53:06] 2026-04-18 11:53:05,883 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 13:53:06] 2026-04-18 11:53:05,883 | INFO     | traces error code: 0
[2026-04-18 13:53:06] 2026-04-18 11:53:05,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 13:53:06] 2026-04-18 11:53:06,022 [wrapper] ==== pilot stdout END ====
[2026-04-18 13:53:06] 2026-04-18 11:53:06,024 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 13:53:06] 2026-04-18 11:53:06,026 [wrapper] pilotpid: 160261
[2026-04-18 13:53:06] 2026-04-18 11:53:06,029 [wrapper] Pilot exit status: 0
[2026-04-18 13:53:06] 2026-04-18 11:53:06,036 [wrapper] pandaids: 7097694244
[2026-04-18 13:53:06] 2026-04-18 11:53:06,134 [wrapper] cleanup supervisor_pilot  427197 160262
[2026-04-18 13:53:06] 2026-04-18 11:53:06,136 [wrapper] Test setup, not cleaning
[2026-04-18 13:53:06] 2026-04-18 11:53:06,139 [wrapper] apfmon messages muted
[2026-04-18 13:53:06] 2026-04-18 11:53:06,140 [wrapper] ==== wrapper stdout END ====
[2026-04-18 13:53:06] 2026-04-18 11:53:06,141 [wrapper] ==== wrapper stderr END ====
[2026-04-18 13:53:06]  *** Error codes and diagnostics ***
[2026-04-18 13:53:06]     "exeErrorCode": 0,
[2026-04-18 13:53:06]     "pilotErrorCode": 0,
[2026-04-18 13:53:06]  *** Listing of results directory ***
[2026-04-18 13:53:06] total 462124
[2026-04-18 13:53:06] -rwx------. 1 boinc boinc     36322 Apr 18 10:25 runpilot2-wrapper.sh
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc    644190 Apr 18 10:36 pilot3.tar.gz
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc      5094 Apr 18 10:42 queuedata.json
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc       100 Apr 18 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 13:53:06] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 13:22 run_atlas
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc       105 Apr 18 13:22 job.xml
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc      6625 Apr 18 13:22 init_data.xml
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc 282221132 Apr 18 13:22 EVNT.49539591._000428.pool.root.1
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc     15665 Apr 18 13:22 start_atlas.sh
[2026-04-18 13:53:06] drwxrwx--x. 2 boinc boinc      4096 Apr 18 13:22 shared
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc    656945 Apr 18 13:22 input.tar.gz
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc         0 Apr 18 13:22 boinc_lockfile
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc      2605 Apr 18 13:22 pandaJob.out
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc    997957 Apr 18 13:22 agis_schedconf.cvmfs.json
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc   1512404 Apr 18 13:22 agis_ddmendpoints.agis.ALL.json
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc       444 Apr 18 13:22 workernode_map.json
[2026-04-18 13:53:06] drwx------. 5 boinc boinc      4096 Apr 18 13:22 pilot3
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc       487 Apr 18 13:51 boinc_task_state.xml
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc 185836121 Apr 18 13:51 HITS.49545114._028169.pool.root.1
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc      1032 Apr 18 13:52 memory_monitor_summary.json
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc    336588 Apr 18 13:52 log.49545114._028169.job.log.tgz.1
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc      6379 Apr 18 13:52 heartbeat_new.json
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc      6270 Apr 18 13:52 heartbeat.json
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc        95 Apr 18 13:52 pilot_heartbeat.json
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc      8192 Apr 18 13:53 boinc_mmap_file
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc        27 Apr 18 13:53 wrapper_checkpoint.txt
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc      5015 Apr 18 13:53 pilotlog.txt
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc    211623 Apr 18 13:53 log.49545114._028169.job.log.1
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc       357 Apr 18 13:53 output.list
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc       410 Apr 18 13:53 runtime_log
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc    563200 Apr 18 13:53 result.tar.gz
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc      8845 Apr 18 13:53 runtime_log.err
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc       658 Apr 18 13:53 3fe2482cfe30.diag
[2026-04-18 13:53:06] -rw-r--r--. 1 boinc boinc     21215 Apr 18 13:53 stderr.txt
[2026-04-18 13:53:06] HITS file was successfully produced:
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc 185836121 Apr 18 13:51 shared/HITS.pool.root.1
[2026-04-18 13:53:06]  *** Contents of shared directory: ***
[2026-04-18 13:53:06] total 458312
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc 282221132 Apr 18 13:22 ATLAS.root_0
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc     15665 Apr 18 13:22 start_atlas.sh
[2026-04-18 13:53:06] -rw-r--r--. 2 boinc boinc    656945 Apr 18 13:22 input.tar.gz
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc 185836121 Apr 18 13:51 HITS.pool.root.1
[2026-04-18 13:53:06] -rw-------. 1 boinc boinc    563200 Apr 18 13:53 result.tar.gz
13:53:08 (155715): run_atlas exited; CPU time 17989.404297
13:53:08 (155715): called boinc_finish(0)

</stderr_txt>
]]>

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