Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:26 (872260): wrapper (7.7.26015): starting
16:58:26 (872260): wrapper: running run_atlas (--nthreads 4)
[2026-04-18 16:58:26] Arguments: --nthreads 4
[2026-04-18 16:58:26] Threads: 4
[2026-04-18 16:58:26] Checking for CVMFS
[2026-04-18 16:58:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 16:58:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 16:58:26] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 16:58:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 16:58:26] 2.9.2.0 745507 667 75944 158587 2 50 34112170 36864000 0 130560 0 493093 99.986 30749 11529 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 16:58:26] CVMFS is ok
[2026-04-18 16:58:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 16:58:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 16:58:27] Further information can be found at the LHC@home message board.
[2026-04-18 16:58:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 16:58:27] Checking for apptainer binary...
[2026-04-18 16:58:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 16:58:27] Running /usr/bin/apptainer --version
[2026-04-18 16:58:27] apptainer version 1.4.1-1.1
[2026-04-18 16:58:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 16:58:27] cosA131
[2026-04-18 16:58:27] apptainer works
[2026-04-18 16:58:27] Set ATHENA_PROC_NUMBER=4
[2026-04-18 16:58:27] Set ATHENA_CORE_NUMBER=4
[2026-04-18 16:58:27] Starting ATLAS job with PandaID=7097430672
[2026-04-18 16:58:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 18:10:50]  *** The last 200 lines of the pilot log: ***
[2026-04-18 18:10:50] 2026-04-18 16:09:49,575 | INFO     | --- collectZombieJob: --- 10, [880893]
[2026-04-18 18:10:50] 2026-04-18 16:09:49,576 | INFO     | zombie collector waiting for pid 880893
[2026-04-18 18:10:50] 2026-04-18 16:09:49,576 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 18:10:50] 2026-04-18 16:09:49,576 | INFO     | collected zombie processes
[2026-04-18 18:10:50] 2026-04-18 16:09:49,576 | INFO     | will attempt to kill all subprocesses of pid=880893
[2026-04-18 18:10:50] 2026-04-18 16:09:49,619 | INFO     | process IDs to be killed: [880893] (in reverse order)
[2026-04-18 18:10:50] 2026-04-18 16:09:49,653 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 18:10:50] 2026-04-18 16:09:49,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 18:10:50] 2026-04-18 16:09:49,655 | INFO     | did not find any defunct processes belonging to 880893
[2026-04-18 18:10:50] 2026-04-18 16:09:49,656 | INFO     | did not find any defunct processes belonging to 880893
[2026-04-18 18:10:50] 2026-04-18 16:09:49,656 | INFO     | Ready for new job
[2026-04-18 18:10:50] 2026-04-18 16:09:49,657 | INFO     | **************************************
[2026-04-18 18:10:50] 2026-04-18 16:09:49,657 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 18:10:50] 2026-04-18 16:09:49,657 | INFO     | **************************************
[2026-04-18 18:10:50] 2026-04-18 16:09:49,657 | INFO     | 
[2026-04-18 18:10:50] 2026-04-18 16:09:49,657 | INFO     | architecture information:
[2026-04-18 18:10:50] 2026-04-18 16:09:49,658 | INFO     | executing command: cat /etc/os-release
[2026-04-18 18:10:50] 2026-04-18 16:09:49,671 | INFO     | cat /etc/os-release:
[2026-04-18 18:10:50] NAME="CentOS Linux"
[2026-04-18 18:10:50] VERSION="7 (Core)"
[2026-04-18 18:10:50] ID="centos"
[2026-04-18 18:10:50] ID_LIKE="rhel fedora"
[2026-04-18 18:10:50] VERSION_ID="7"
[2026-04-18 18:10:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 18:10:50] ANSI_COLOR="0;31"
[2026-04-18 18:10:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 18:10:50] HOME_URL="https://www.centos.org/"
[2026-04-18 18:10:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 18:10:50] 
[2026-04-18 18:10:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 18:10:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 18:10:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 18:10:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 18:10:50] 
[2026-04-18 18:10:50] 2026-04-18 16:09:49,672 | INFO     | **************************************
[2026-04-18 18:10:50] 2026-04-18 16:09:50,175 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 18:10:50] 2026-04-18 16:09:50,192 | INFO     | sufficient remaining disk space (321083408384 B)
[2026-04-18 18:10:50] 2026-04-18 16:09:50,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 18:10:50] 2026-04-18 16:09:50,192 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 18:10:50] 2026-04-18 16:09:50,192 | INFO     | update_server=False
[2026-04-18 18:10:50] 2026-04-18 16:09:50,192 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 18:10:50] 2026-04-18 16:09:50,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 18:10:50] 2026-04-18 16:09:50,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:10:50] 2026-04-18 16:09:50,270 | INFO     | all payload control threads have been joined
[2026-04-18 18:10:50] 2026-04-18 16:09:50,501 | INFO     | all job control threads have been joined
[2026-04-18 18:10:50] 2026-04-18 16:09:50,740 | WARNING  | process 880893 can no longer be monitored (due to stat problems) - aborting
[2026-04-18 18:10:50] 2026-04-18 16:09:50,771 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 18:10:50] 2026-04-18 16:09:50,810 | INFO     | number of running child processes to parent process 880893: 1
[2026-04-18 18:10:50] 2026-04-18 16:09:50,810 | INFO     | maximum number of monitored processes: 6
[2026-04-18 18:10:50] 2026-04-18 16:09:50,810 | INFO     | aborting job monitoring since job object (job id=7097430672) has expired
[2026-04-18 18:10:50] 2026-04-18 16:09:50,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:10:50] 2026-04-18 16:09:50,810 | INFO     | will abort loop
[2026-04-18 18:10:50] 2026-04-18 16:09:50,994 | INFO     | all data control threads have been joined
[2026-04-18 18:10:50] 2026-04-18 16:09:51,198 | INFO     | [job] retrieve thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:51,199 | INFO     | [job] queue monitor thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:51,275 | INFO     | [payload] control thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:51,506 | INFO     | [job] control thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:51,816 | INFO     | [job] job monitor thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:51,933 | INFO     | [payload] failed_post thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,000 | INFO     | [data] control thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,199 | INFO     | [data] copytool_out thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,253 | INFO     | [job] validate thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,343 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,397 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,422 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,602 | INFO     | [data] copytool_in thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,782 | INFO     | [payload] validate_post thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:09:52,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 18:10:50] 2026-04-18 16:09:56,942 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:10:01,185 | INFO     | job.realtimelogging is not enabled
[2026-04-18 18:10:50] 2026-04-18 16:10:02,186 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 18:10:50] 2026-04-18 16:10:20,152 | INFO     | PID=876379 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 18:10:50] 2026-04-18 16:10:20,152 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 18:10:50] 2026-04-18 16:10:20,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 18:10:50] 2026-04-18 16:10:20,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 18:10:50] 2026-04-18 16:10:44,725 | INFO     | [monitor] cgroup control has ended
[2026-04-18 18:10:50] 2026-04-18 16:10:45,406 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139941551527744)>', '<ExcThread(monitor, started 139940100830976)>']
[2026-04-18 18:10:50] 2026-04-18 16:10:46,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 18:10:50] 2026-04-18 16:10:46,291 | INFO     | [monitor] control thread has ended
[2026-04-18 18:10:50] 2026-04-18 16:10:50,432 | INFO     | all workflow threads have been joined
[2026-04-18 18:10:50] 2026-04-18 16:10:50,432 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 18:10:50] 2026-04-18 16:10:50,432 | INFO     | traces error code: 0
[2026-04-18 18:10:50] 2026-04-18 16:10:50,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 18:10:50] 2026-04-18 16:10:50,513 [wrapper] ==== pilot stdout END ====
[2026-04-18 18:10:50] 2026-04-18 16:10:50,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 18:10:50] 2026-04-18 16:10:50,522 [wrapper] pilotpid: 876379
[2026-04-18 18:10:50] 2026-04-18 16:10:50,526 [wrapper] Pilot exit status: 0
[2026-04-18 18:10:50] 2026-04-18 16:10:50,538 [wrapper] pandaids: 7097430672
[2026-04-18 18:10:50] 2026-04-18 16:10:50,560 [wrapper] cleanup supervisor_pilot  885965 876380
[2026-04-18 18:10:50] 2026-04-18 16:10:50,565 [wrapper] Test setup, not cleaning
[2026-04-18 18:10:50] 2026-04-18 16:10:50,568 [wrapper] apfmon messages muted
[2026-04-18 18:10:50] 2026-04-18 16:10:50,572 [wrapper] ==== wrapper stdout END ====
[2026-04-18 18:10:50] 2026-04-18 16:10:50,576 [wrapper] ==== wrapper stderr END ====
[2026-04-18 18:10:50]  *** Error codes and diagnostics ***
[2026-04-18 18:10:50]     "exeErrorCode": 0,
[2026-04-18 18:10:50]     "pilotErrorCode": 0,
[2026-04-18 18:10:50]  *** Listing of results directory ***
[2026-04-18 18:10:50] total 451988
[2026-04-18 18:10:50] -rwx------ 1 boinc boinc     36322 Apr 18 09:53 runpilot2-wrapper.sh
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc    644190 Apr 18 10:01 pilot3.tar.gz
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc      5094 Apr 18 10:13 queuedata.json
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc       100 Apr 18 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 18:10:50] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 16:58 run_atlas
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc       105 Apr 18 16:58 job.xml
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc 277924444 Apr 18 16:58 EVNT.49539591._000257.pool.root.1
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc    656942 Apr 18 16:58 input.tar.gz
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc     15665 Apr 18 16:58 start_atlas.sh
[2026-04-18 18:10:50] drwxrwx--x 2 boinc boinc      4096 Apr 18 16:58 shared
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc         0 Apr 18 16:58 boinc_setup_complete
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc      6293 Apr 18 16:58 init_data.xml
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc         0 Apr 18 16:58 boinc_lockfile
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc      2603 Apr 18 16:58 pandaJob.out
[2026-04-18 18:10:50] -rw------- 1 boinc boinc    997676 Apr 18 16:58 agis_schedconf.cvmfs.json
[2026-04-18 18:10:50] -rw------- 1 boinc boinc   1512404 Apr 18 16:58 agis_ddmendpoints.agis.ALL.json
[2026-04-18 18:10:50] -rw------- 1 boinc boinc       428 Apr 18 16:58 workernode_map.json
[2026-04-18 18:10:50] drwx------ 5 boinc boinc      4096 Apr 18 16:58 pilot3
[2026-04-18 18:10:50] -rw------- 1 boinc boinc 179547250 Apr 18 18:09 HITS.49545114._026642.pool.root.1
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc       487 Apr 18 18:09 boinc_task_state.xml
[2026-04-18 18:10:50] -rw------- 1 boinc boinc      1026 Apr 18 18:09 memory_monitor_summary.json
[2026-04-18 18:10:50] -rw------- 1 boinc boinc    237290 Apr 18 18:09 log.49545114._026642.job.log.tgz.1
[2026-04-18 18:10:50] -rw------- 1 boinc boinc      6335 Apr 18 18:09 heartbeat_new.json
[2026-04-18 18:10:50] -rw------- 1 boinc boinc      6226 Apr 18 18:09 heartbeat.json
[2026-04-18 18:10:50] -rw------- 1 boinc boinc        95 Apr 18 18:10 pilot_heartbeat.json
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc        27 Apr 18 18:10 wrapper_checkpoint.txt
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc      8192 Apr 18 18:10 boinc_mmap_file
[2026-04-18 18:10:50] -rw------- 1 boinc boinc      5340 Apr 18 18:10 pilotlog.txt
[2026-04-18 18:10:50] -rw------- 1 boinc boinc    425735 Apr 18 18:10 log.49545114._026642.job.log.1
[2026-04-18 18:10:50] -rw------- 1 boinc boinc       357 Apr 18 18:10 output.list
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc       410 Apr 18 18:10 runtime_log
[2026-04-18 18:10:50] -rw------- 1 boinc boinc    675840 Apr 18 18:10 result.tar.gz
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc      8523 Apr 18 18:10 runtime_log.err
[2026-04-18 18:10:50] -rw------- 1 boinc boinc       658 Apr 18 18:10 38878f4dca69.diag
[2026-04-18 18:10:50] -rw-r--r-- 1 boinc boinc     11107 Apr 18 18:10 stderr.txt
[2026-04-18 18:10:50] HITS file was successfully produced:
[2026-04-18 18:10:50] -rw------- 1 boinc boinc 179547250 Apr 18 18:09 shared/HITS.pool.root.1
[2026-04-18 18:10:50]  *** Contents of shared directory: ***
[2026-04-18 18:10:50] total 448080
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc 277924444 Apr 18 16:58 ATLAS.root_0
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc    656942 Apr 18 16:58 input.tar.gz
[2026-04-18 18:10:50] -rw-r--r-- 2 boinc boinc     15665 Apr 18 16:58 start_atlas.sh
[2026-04-18 18:10:50] -rw------- 1 boinc boinc 179547250 Apr 18 18:09 HITS.pool.root.1
[2026-04-18 18:10:50] -rw------- 1 boinc boinc    675840 Apr 18 18:10 result.tar.gz
18:10:52 (872260): run_atlas exited; CPU time 15691.441638
18:10:52 (872260): called boinc_finish(0)

</stderr_txt>
]]>

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