Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:33:57 (999198): wrapper (7.7.26015): starting
11:33:57 (999198): wrapper: running run_atlas (--nthreads 4)
[2026-04-20 11:33:57] Arguments: --nthreads 4
[2026-04-20 11:33:57] Threads: 4
[2026-04-20 11:33:57] Checking for CVMFS
[2026-04-20 11:33:57] No cvmfs_config command found, will try listing directly
[2026-04-20 11:33:57] CVMFS is ok
[2026-04-20 11:33:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-20 11:33:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-20 11:33:57] Further information can be found at the LHC@home message board.
[2026-04-20 11:33:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-20 11:33:57] Checking for apptainer binary...
[2026-04-20 11:33:57] which: no apptainer in ((null))
[2026-04-20 11:33:57] apptainer is not installed, using version from CVMFS
[2026-04-20 11:33:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-20 11:33:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-20 11:33:58] apptainer works
[2026-04-20 11:33:58] Set ATHENA_PROC_NUMBER=4
[2026-04-20 11:33:58] Set ATHENA_CORE_NUMBER=4
[2026-04-20 11:33:58] Starting ATLAS job with PandaID=7097404723
[2026-04-20 11:33:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-20 14:18:04]  *** The last 200 lines of the pilot log: ***
[2026-04-20 14:18:04] 2026-04-20 12:15:56,440 | INFO     | total number of processed events: 400 (read)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,470 | INFO     | using path: /var/lib/boinc/var/slot48/slots/4/PanDA_Pilot-7097404723/memory_monitor_summary.json (trf name=prmon)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,471 | INFO     | extracted standard info from prmon json
[2026-04-20 14:18:04] 2026-04-20 12:15:56,471 | INFO     | extracted standard memory fields from prmon json
[2026-04-20 14:18:04] 2026-04-20 12:15:56,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-20 14:18:04] 2026-04-20 12:15:56,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-20 14:18:04] 2026-04-20 12:15:56,475 | INFO     | fitting pss+swap vs Time
[2026-04-20 14:18:04] 2026-04-20 12:15:56,475 | INFO     | sum of square deviations: 1246386160.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,476 | INFO     | sum of deviations: 6039887732.999996
[2026-04-20 14:18:04] 2026-04-20 12:15:56,476 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,477 | INFO     | mean y: 2325235.9685534593
[2026-04-20 14:18:04] 2026-04-20 12:15:56,477 | INFO     | intersect: 2325235.9685534593
[2026-04-20 14:18:04] 2026-04-20 12:15:56,477 | INFO     | chi2: 2.227627030325402
[2026-04-20 14:18:04] 2026-04-20 12:15:56,477 | INFO     | sum of square deviations: 1132458442.5
[2026-04-20 14:18:04] 2026-04-20 12:15:56,478 | INFO     | sum of deviations: 15763723577.999994
[2026-04-20 14:18:04] 2026-04-20 12:15:56,478 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,478 | INFO     | mean y: 2337906.701298701
[2026-04-20 14:18:04] 2026-04-20 12:15:56,478 | INFO     | intersect: 2337906.701298701
[2026-04-20 14:18:04] 2026-04-20 12:15:56,479 | INFO     | chi2: 1.418474816043585
[2026-04-20 14:18:04] 2026-04-20 12:15:56,479 | INFO     | current chi2=1.418474816043585 (change=36.323504934469206 %)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,479 | INFO     | sum of square deviations: 1025693650.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,480 | INFO     | sum of deviations: 15209916778.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,480 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,480 | INFO     | mean y: 2337115.3825503355
[2026-04-20 14:18:04] 2026-04-20 12:15:56,480 | INFO     | intersect: 2337115.3825503355
[2026-04-20 14:18:04] 2026-04-20 12:15:56,480 | INFO     | chi2: 1.4200297256495797
[2026-04-20 14:18:04] 2026-04-20 12:15:56,481 | INFO     | current chi2=1.4200297256495797 (change=-0.1096184146809009 %)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,481 | INFO     | right removable region: 148
[2026-04-20 14:18:04] 2026-04-20 12:15:56,481 | INFO     | sum of square deviations: 1132458442.5
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | sum of deviations: -15072417928.5
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | mean y: 2353050.0194805195
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | intersect: 2353050.0194805195
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | chi2: 0.8561466934067317
[2026-04-20 14:18:04] 2026-04-20 12:15:56,482 | INFO     | current chi2=0.8561466934067317 (change=61.56687444748462 %)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,483 | INFO     | sum of square deviations: 1025693650.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,483 | INFO     | sum of deviations: -13955746652.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | mean y: 2351423.3087248323
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | intersect: 2351423.3087248323
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | chi2: 0.8529457303034067
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | current chi2=0.8529457303034067 (change=0.373880215619109 %)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,484 | INFO     | left removable region: 10
[2026-04-20 14:18:04] 2026-04-20 12:15:56,485 | INFO     | sum of square deviations: 814878534.5
[2026-04-20 14:18:04] 2026-04-20 12:15:56,485 | INFO     | sum of deviations: -4116190025.000001
[2026-04-20 14:18:04] 2026-04-20 12:15:56,485 | INFO     | mean x (centered): 0.0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,486 | INFO     | mean y: 2366074.3333333335
[2026-04-20 14:18:04] 2026-04-20 12:15:56,486 | INFO     | intersect: 2366074.3333333335
[2026-04-20 14:18:04] 2026-04-20 12:15:56,486 | INFO     | chi2: 0.014658760308130792
[2026-04-20 14:18:04] 2026-04-20 12:15:56,486 | INFO     | current memory leak: -5.05 B/s (using 138 data points, chi2=0.01)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | could have reported an average CPU frequency of 2699 MHz (9 samples)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | ..............................
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . Timing measurements:
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . get job = 0 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . initial setup = 9 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . payload setup = 16 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . stage-in = 0 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . payload execution = 9655 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . stage-out = 0 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | . log creation = 0 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,487 | INFO     | ..............................
[2026-04-20 14:18:04] 2026-04-20 12:15:56,953 | INFO     | 
[2026-04-20 14:18:04] 2026-04-20 12:15:56,953 | INFO     | job summary report
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | --------------------------------------------------
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | PanDA job id: 7097404723
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | task id: 49545114
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | errors: (none)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | pilot state: finished 
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | transexitcode: 0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | exeerrorcode: 0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | exeerrordiag: 
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | exitcode: 0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,954 | INFO     | exitmsg: OK
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | cpuconsumptiontime: 36698 s
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | nevents: 400
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | neventsw: 0
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | pid: 1009668
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | pgrp: 1009668
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | corecount: 4
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | event service: False
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | sizes: {0: 2280968, 1: 2283465, 12: 2283465, 9676: 2312512, 9677: 2321532, 9680: 2321588, 9681: 2321974}
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | --------------------------------------------------
[2026-04-20 14:18:04] 2026-04-20 12:15:56,955 | INFO     | 
[2026-04-20 14:18:04] 2026-04-20 12:15:56,956 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/4
[2026-04-20 14:18:04] 2026-04-20 12:15:56,991 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,991 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,992 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,992 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-20 14:18:04] 2026-04-20 12:15:56,994 | INFO     | job 7097404723 has completed (purged errors)
[2026-04-20 14:18:04] 2026-04-20 12:15:56,995 | INFO     | overall cleanup function is called
[2026-04-20 14:18:04] 2026-04-20 12:15:58,008 | INFO     | --- collectZombieJob: --- 10, [1009668]
[2026-04-20 14:18:04] 2026-04-20 12:15:58,008 | INFO     | zombie collector waiting for pid 1009668
[2026-04-20 14:18:04] 2026-04-20 12:15:58,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-20 14:18:04] 2026-04-20 12:15:58,008 | INFO     | collected zombie processes
[2026-04-20 14:18:04] 2026-04-20 12:15:58,008 | INFO     | will attempt to kill all subprocesses of pid=1009668
[2026-04-20 14:18:04] 2026-04-20 12:15:58,050 | INFO     | number of running child processes to parent process 1009668: 1
[2026-04-20 14:18:04] 2026-04-20 12:15:58,051 | INFO     | maximum number of monitored processes: 6
[2026-04-20 14:18:04] 2026-04-20 12:15:58,051 | INFO     | aborting job monitoring since job object (job id=7097404723) has expired
[2026-04-20 14:18:04] 2026-04-20 12:15:59,393 | INFO     | PID=1003922 has CPU usage=26.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-20 14:18:04] 2026-04-20 12:15:59,393 | INFO     | .. there are 20 such processes running
[2026-04-20 14:18:04] 2026-04-20 12:15:59,703 | INFO     | process IDs to be killed: [1009668] (in reverse order)
[2026-04-20 14:18:04] 2026-04-20 12:16:00,021 | WARNING  | found no corresponding commands to process id(s)
[2026-04-20 14:18:04] 2026-04-20 12:16:00,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-20 14:18:04] 2026-04-20 12:16:00,051 | INFO     | did not find any defunct processes belonging to 1009668
[2026-04-20 14:18:04] 2026-04-20 12:16:00,079 | INFO     | did not find any defunct processes belonging to 1009668
[2026-04-20 14:18:04] 2026-04-20 12:16:00,080 | INFO     | Ready for new job
[2026-04-20 14:18:04] 2026-04-20 12:16:00,082 | INFO     | **************************************
[2026-04-20 14:18:04] 2026-04-20 12:16:00,082 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-20 14:18:04] 2026-04-20 12:16:00,082 | INFO     | **************************************
[2026-04-20 14:18:04] 2026-04-20 12:16:00,082 | INFO     | 
[2026-04-20 14:18:04] 2026-04-20 12:16:00,090 | INFO     | architecture information:
[2026-04-20 14:18:04] 2026-04-20 12:16:00,091 | INFO     | executing command: cat /etc/os-release
[2026-04-20 14:18:04] 2026-04-20 12:16:00,113 | INFO     | cat /etc/os-release:
[2026-04-20 14:18:04] NAME="CentOS Linux"
[2026-04-20 14:18:04] VERSION="7 (Core)"
[2026-04-20 14:18:04] ID="centos"
[2026-04-20 14:18:04] ID_LIKE="rhel fedora"
[2026-04-20 14:18:04] VERSION_ID="7"
[2026-04-20 14:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-20 14:18:04] ANSI_COLOR="0;31"
[2026-04-20 14:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-20 14:18:04] HOME_URL="https://www.centos.org/"
[2026-04-20 14:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-20 14:18:04] 
[2026-04-20 14:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-20 14:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-20 14:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-20 14:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-20 14:18:04] 
[2026-04-20 14:18:04] 2026-04-20 12:16:00,113 | INFO     | **************************************
[2026-04-20 14:18:04] 2026-04-20 12:16:00,616 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/4
[2026-04-20 14:18:04] 2026-04-20 12:16:00,642 | INFO     | sufficient remaining disk space (189610852352 B)
[2026-04-20 14:18:04] 2026-04-20 12:16:00,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-20 14:18:04] 2026-04-20 12:16:00,642 | INFO     | current server update state: UPDATING_FINAL
[2026-04-20 14:18:04] 2026-04-20 12:16:00,642 | INFO     | update_server=False
[2026-04-20 14:18:04] 2026-04-20 12:16:00,642 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-20 14:18:04] 2026-04-20 12:16:00,765 | INFO     | all data control threads have been joined
[2026-04-20 14:18:04] 2026-04-20 12:16:00,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-20 14:18:04] 2026-04-20 12:16:01,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-20 14:18:04] 2026-04-20 12:16:01,558 | INFO     | aborting loop
[2026-04-20 14:18:04] 2026-04-20 12:16:01,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-20 14:18:04] 2026-04-20 12:16:01,648 | INFO     | [job] retrieve thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:01,771 | INFO     | [data] control thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:01,890 | INFO     | all job control threads have been joined
[2026-04-20 14:18:04] 2026-04-20 12:16:01,999 | INFO     | [payload] execute_payloads thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,017 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,066 | INFO     | all payload control threads have been joined
[2026-04-20 14:18:04] 2026-04-20 12:16:02,323 | INFO     | [data] copytool_in thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-20 14:18:04] 2026-04-20 12:16:02,567 | INFO     | [job] job monitor thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,601 | INFO     | [job] queue monitor thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,684 | INFO     | [payload] validate_post thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,848 | INFO     | [job] validate thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,895 | INFO     | [job] control thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,976 | INFO     | [data] copytool_out thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,977 | INFO     | [job] create_data_payload thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:02,978 | INFO     | [payload] validate_pre thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:03,071 | INFO     | [payload] control thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:03,154 | INFO     | [payload] failed_post thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:06,434 | INFO     | [data] queue_monitor thread has finished
[2026-04-20 14:18:04] 2026-04-20 12:16:32,452 | INFO     | PID=1003922 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-20 14:18:04] 2026-04-20 12:16:32,452 | INFO     | .. there are 20 such processes running
[2026-04-20 14:18:04] 2026-04-20 12:16:32,452 | INFO     | found 0 job(s) in 20 queues
[2026-04-20 14:18:04] 2026-04-20 12:16:32,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-20 14:18:04] 2026-04-20 12:16:32,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-20 14:18:04] 2026-04-20 12:16:40,028 | INFO     | [monitor] cgroup control has ended
[2026-04-20 14:18:04] 2026-04-20 12:16:41,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23229136389952)>', '<ExcThread(monitor, started 23228895733504)>']
[2026-04-20 14:18:04] 2026-04-20 12:16:42,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-20 14:18:04] 2026-04-20 12:16:42,503 | INFO     | [monitor] control thread has ended
[2026-04-20 14:18:04] 2026-04-20 12:16:46,700 | INFO     | all workflow threads have been joined
[2026-04-20 14:18:04] 2026-04-20 12:16:46,700 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-20 14:18:04] 2026-04-20 12:16:46,701 | INFO     | traces error code: 0
[2026-04-20 14:18:04] 2026-04-20 12:16:46,701 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-20 14:18:04] 2026-04-20 12:16:46,847 [wrapper] ==== pilot stdout END ====
[2026-04-20 14:18:04] 2026-04-20 12:16:46,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-20 14:18:04] 2026-04-20 12:16:46,858 [wrapper] pilotpid: 1003922
[2026-04-20 14:18:04] 2026-04-20 12:16:46,862 [wrapper] Pilot exit status: 0
[2026-04-20 14:18:04] 2026-04-20 12:16:46,878 [wrapper] pandaids: 7097404723
[2026-04-20 14:18:04] 2026-04-20 12:16:47,084 [wrapper] cleanup supervisor_pilot 1433373 1003923
[2026-04-20 14:18:04] 2026-04-20 12:16:47,089 [wrapper] Test setup, not cleaning
[2026-04-20 14:18:04] 2026-04-20 12:16:47,093 [wrapper] apfmon messages muted
[2026-04-20 14:18:04] 2026-04-20 12:16:47,097 [wrapper] ==== wrapper stdout END ====
[2026-04-20 14:18:04] 2026-04-20 12:16:47,101 [wrapper] ==== wrapper stderr END ====
[2026-04-20 14:18:04]  *** Error codes and diagnostics ***
[2026-04-20 14:18:04]     "exeErrorCode": 0,
[2026-04-20 14:18:04]     "pilotErrorCode": 0,
[2026-04-20 14:18:04]  *** Listing of results directory ***
[2026-04-20 14:18:04] total 462200
[2026-04-20 14:18:04] -rwx------. 1 boinc boinc     36322 Apr 18 09:40 runpilot2-wrapper.sh
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc    644190 Apr 18 10:01 pilot3.tar.gz
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc      5094 Apr 18 10:02 queuedata.json
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc       100 Apr 20 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-20 14:18:04] -rwxr-xr-x. 1 boinc boinc      7986 Apr 20 11:33 run_atlas
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc       105 Apr 20 11:33 job.xml
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc 280172394 Apr 20 11:33 EVNT.49539591._000254.pool.root.1
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc      6538 Apr 20 11:33 init_data.xml
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc     15665 Apr 20 11:33 start_atlas.sh
[2026-04-20 14:18:04] drwxrwx--x. 2 boinc boinc      4096 Apr 20 11:33 shared
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc    656943 Apr 20 11:33 input.tar.gz
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc         0 Apr 20 11:33 boinc_lockfile
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc      2603 Apr 20 11:33 pandaJob.out
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc    997264 Apr 20 11:34 agis_schedconf.cvmfs.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc   1512404 Apr 20 11:34 agis_ddmendpoints.agis.ALL.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc       440 Apr 20 11:34 workernode_map.json
[2026-04-20 14:18:04] drwx------. 5 boinc boinc      4096 Apr 20 11:34 pilot3
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc 186659975 Apr 20 14:15 HITS.49545114._026410.pool.root.1
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc       487 Apr 20 14:15 boinc_task_state.xml
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc        95 Apr 20 14:15 pilot_heartbeat.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc      1026 Apr 20 14:15 memory_monitor_summary.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc    295481 Apr 20 14:15 log.49545114._026410.job.log.tgz.1
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc      6364 Apr 20 14:15 heartbeat_new.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc      6255 Apr 20 14:15 heartbeat.json
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc      4829 Apr 20 14:16 pilotlog.txt
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc    900675 Apr 20 14:16 log.49545114._026410.job.log.1
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc       357 Apr 20 14:16 output.list
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc       410 Apr 20 14:16 runtime_log
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc   1218560 Apr 20 14:16 result.tar.gz
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc      8826 Apr 20 14:16 runtime_log.err
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc       663 Apr 20 14:16 3581bb24d88b.diag
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc        27 Apr 20 14:17 wrapper_checkpoint.txt
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc      8192 Apr 20 14:18 boinc_mmap_file
[2026-04-20 14:18:04] -rw-r--r--. 1 boinc boinc     20866 Apr 20 14:18 stderr.txt
[2026-04-20 14:18:04] HITS file was successfully produced:
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc 186659975 Apr 20 14:15 shared/HITS.pool.root.1
[2026-04-20 14:18:04]  *** Contents of shared directory: ***
[2026-04-20 14:18:04] total 457756
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc 280172394 Apr 20 11:33 ATLAS.root_0
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc     15665 Apr 20 11:33 start_atlas.sh
[2026-04-20 14:18:04] -rw-r--r--. 2 boinc boinc    656943 Apr 20 11:33 input.tar.gz
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc 186659975 Apr 20 14:15 HITS.pool.root.1
[2026-04-20 14:18:04] -rw-------. 1 boinc boinc   1218560 Apr 20 14:16 result.tar.gz
14:18:05 (999198): run_atlas exited; CPU time 37337.148977
14:18:05 (999198): called boinc_finish(0)

</stderr_txt>
]]>

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