Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:00:32 (585462): wrapper (7.7.26015): starting
11:00:32 (585462): wrapper: running run_atlas (--nthreads 12)
[2026-04-18 11:00:32] Arguments: --nthreads 12
[2026-04-18 11:00:32] Threads: 12
[2026-04-18 11:00:32] Checking for CVMFS
[2026-04-18 11:00:32] No cvmfs_config command found, will try listing directly
[2026-04-18 11:00:32] CVMFS is ok
[2026-04-18 11:00:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 11:00:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 11:00:32] Further information can be found at the LHC@home message board.
[2026-04-18 11:00:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 11:00:32] Checking for apptainer binary...
[2026-04-18 11:00:32] which: no apptainer in ((null))
[2026-04-18 11:00:32] apptainer is not installed, using version from CVMFS
[2026-04-18 11:00:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 11:00:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/10/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-18 11:00:33] apptainer works
[2026-04-18 11:00:33] Set ATHENA_PROC_NUMBER=12
[2026-04-18 11:00:33] Set ATHENA_CORE_NUMBER=12
[2026-04-18 11:00:33] Starting ATLAS job with PandaID=7090325520
[2026-04-18 11:00:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 11:30:52]  *** The last 200 lines of the pilot log: ***
[2026-04-18 11:30:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-18 11:30:52]  is_altstaged=None
[2026-04-18 11:30:52]  is_tar=False
[2026-04-18 11:30:52]  lfn=log.49263191._072010.job.log.tgz.1
[2026-04-18 11:30:52]  mtime=0
[2026-04-18 11:30:52]  protocol_id=None
[2026-04-18 11:30:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-18 11:30:52]  replicas=None
[2026-04-18 11:30:52]  scope=mc23_13p6TeV
[2026-04-18 11:30:52]  status=None
[2026-04-18 11:30:52]  status_code=0
[2026-04-18 11:30:52]  storage_token=
[2026-04-18 11:30:52]  surl=/var/lib/boinc/var/slot48/slots/10/PanDA_Pilot-7090325520/log.49263191._072010.job.log.tgz.1
[2026-04-18 11:30:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/a1/log.49263191._072010.job.log.tgz.1
[2026-04-18 11:30:52]  workdir=None
[2026-04-18 11:30:52] ]
[2026-04-18 11:30:52] 2026-04-18 09:30:15,461 | INFO     | transferring file log.49263191._072010.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/10/PanDA_Pilot-7090325520/log.49263191._072010.job.log.tgz.1 to /var/lib/
[2026-04-18 11:30:52] 2026-04-18 09:30:15,461 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/10/PanDA_Pilot-7090325520/log.49263191._072010.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/10/
[2026-04-18 11:30:52] 2026-04-18 09:30:15,476 | INFO     | adding to output.list: log.49263191._072010.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/a1/log.49263191._072010.job.log.tg
[2026-04-18 11:30:52] 2026-04-18 09:30:15,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-18 11:30:52] 2026-04-18 09:30:15,476 | INFO     | summary of transferred files:
[2026-04-18 11:30:52] 2026-04-18 09:30:15,476 | INFO     |  -- lfn=log.49263191._072010.job.log.tgz.1, status_code=0, status=transferred
[2026-04-18 11:30:52] 2026-04-18 09:30:15,477 | INFO     | stage-out finished correctly
[2026-04-18 11:30:52] 2026-04-18 09:30:16,391 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-18 11:30:52] 2026-04-18 09:30:17,266 | INFO     | job 7090325520 has state=finished
[2026-04-18 11:30:52] 2026-04-18 09:30:17,266 | INFO     | preparing for final server update for job 7090325520 in state='finished'
[2026-04-18 11:30:52] 2026-04-18 09:30:17,706 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,707 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/10/PanDA_Pilot-7090325520/jobReport.json
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/10/workernode_map.json
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | this job has now completed (state=finished)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | log transfer has been attempted: DONE
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | job 7090325520 has finished - writing final server update
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_7483/.job.ad'
[2026-04-18 11:30:52] 2026-04-18 09:30:17,709 | INFO     | total number of processed events: 400 (read)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,727 | INFO     | using path: /var/lib/boinc/var/slot48/slots/10/PanDA_Pilot-7090325520/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,727 | INFO     | extracted standard info from prmon json
[2026-04-18 11:30:52] 2026-04-18 09:30:17,727 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 11:30:52] 2026-04-18 09:30:17,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 11:30:52] 2026-04-18 09:30:17,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | fitting pss+swap vs Time
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | sum of square deviations: 3294945.5
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | sum of deviations: -37962130.0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | mean x (centered): 0.0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | mean y: 2695381.272727273
[2026-04-18 11:30:52] 2026-04-18 09:30:17,728 | INFO     | intersect: 2695381.272727273
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | chi2: 0.00021644309934501176
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | current memory leak: -11.52 B/s (using 22 data points, chi2=0.00)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | could have reported an average CPU frequency of 3626 MHz (4 samples)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | ..............................
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . Timing measurements:
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . get job = 0 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . initial setup = 4 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . payload setup = 6 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . stage-in = 0 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . payload execution = 1750 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . stage-out = 0 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | . log creation = 0 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,729 | INFO     | ..............................
[2026-04-18 11:30:52] 2026-04-18 09:30:17,779 | INFO     | 
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | job summary report
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | --------------------------------------------------
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | PanDA job id: 7090325520
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | task id: 49263191
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | errors: (none)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | pilot state: finished 
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | transexitcode: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | exeerrorcode: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | exeerrordiag: 
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | exitcode: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | exitmsg: OK
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | cpuconsumptiontime: 18405 s
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | nevents: 400
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | neventsw: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | pid: 605980
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | pgrp: 605980
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | corecount: 12
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | event service: False
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | sizes: {0: 2283452, 11: 2283452, 1759: 2308320, 1760: 2317397, 1761: 2317397, 1762: 2317591}
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | --------------------------------------------------
[2026-04-18 11:30:52] 2026-04-18 09:30:17,780 | INFO     | 
[2026-04-18 11:30:52] 2026-04-18 09:30:17,781 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/10
[2026-04-18 11:30:52] 2026-04-18 09:30:17,800 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | job 7090325520 has completed (purged errors)
[2026-04-18 11:30:52] 2026-04-18 09:30:17,801 | INFO     | overall cleanup function is called
[2026-04-18 11:30:52] 2026-04-18 09:30:18,809 | INFO     | --- collectZombieJob: --- 10, [605980]
[2026-04-18 11:30:52] 2026-04-18 09:30:18,809 | INFO     | zombie collector waiting for pid 605980
[2026-04-18 11:30:52] 2026-04-18 09:30:18,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 11:30:52] 2026-04-18 09:30:18,809 | INFO     | collected zombie processes
[2026-04-18 11:30:52] 2026-04-18 09:30:18,809 | INFO     | will attempt to kill all subprocesses of pid=605980
[2026-04-18 11:30:52] 2026-04-18 09:30:19,096 | INFO     | process IDs to be killed: [605980] (in reverse order)
[2026-04-18 11:30:52] 2026-04-18 09:30:19,211 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 11:30:52] 2026-04-18 09:30:19,211 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 11:30:52] 2026-04-18 09:30:19,229 | INFO     | did not find any defunct processes belonging to 605980
[2026-04-18 11:30:52] 2026-04-18 09:30:19,246 | INFO     | did not find any defunct processes belonging to 605980
[2026-04-18 11:30:52] 2026-04-18 09:30:19,246 | INFO     | Ready for new job
[2026-04-18 11:30:52] 2026-04-18 09:30:19,247 | INFO     | **************************************
[2026-04-18 11:30:52] 2026-04-18 09:30:19,247 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 11:30:52] 2026-04-18 09:30:19,247 | INFO     | **************************************
[2026-04-18 11:30:52] 2026-04-18 09:30:19,247 | INFO     | 
[2026-04-18 11:30:52] 2026-04-18 09:30:19,253 | INFO     | architecture information:
[2026-04-18 11:30:52] 2026-04-18 09:30:19,253 | INFO     | executing command: cat /etc/os-release
[2026-04-18 11:30:52] 2026-04-18 09:30:19,267 | INFO     | cat /etc/os-release:
[2026-04-18 11:30:52] NAME="CentOS Linux"
[2026-04-18 11:30:52] VERSION="7 (Core)"
[2026-04-18 11:30:52] ID="centos"
[2026-04-18 11:30:52] ID_LIKE="rhel fedora"
[2026-04-18 11:30:52] VERSION_ID="7"
[2026-04-18 11:30:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 11:30:52] ANSI_COLOR="0;31"
[2026-04-18 11:30:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 11:30:52] HOME_URL="https://www.centos.org/"
[2026-04-18 11:30:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 11:30:52] 
[2026-04-18 11:30:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 11:30:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 11:30:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 11:30:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 11:30:52] 
[2026-04-18 11:30:52] 2026-04-18 09:30:19,267 | INFO     | **************************************
[2026-04-18 11:30:52] 2026-04-18 09:30:19,769 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/10
[2026-04-18 11:30:52] 2026-04-18 09:30:19,784 | INFO     | sufficient remaining disk space (159180128256 B)
[2026-04-18 11:30:52] 2026-04-18 09:30:19,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 11:30:52] 2026-04-18 09:30:19,785 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 11:30:52] 2026-04-18 09:30:19,785 | INFO     | update_server=False
[2026-04-18 11:30:52] 2026-04-18 09:30:19,785 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 11:30:52] 2026-04-18 09:30:20,435 | INFO     | all job control threads have been joined
[2026-04-18 11:30:52] 2026-04-18 09:30:20,587 | INFO     | all payload control threads have been joined
[2026-04-18 11:30:52] 2026-04-18 09:30:20,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:30:52] 2026-04-18 09:30:20,791 | INFO     | [job] retrieve thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:20,887 | INFO     | all data control threads have been joined
[2026-04-18 11:30:52] 2026-04-18 09:30:21,002 | WARNING  | process 605980 can no longer be monitored (due to stat problems) - aborting
[2026-04-18 11:30:52] 2026-04-18 09:30:21,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 11:30:52] 2026-04-18 09:30:21,214 | INFO     | using path: /var/lib/boinc/var/slot48/slots/10/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 11:30:52] 2026-04-18 09:30:21,317 | INFO     | [payload] failed_post thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,440 | INFO     | [job] control thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,481 | INFO     | number of running child processes to parent process 605980: 1
[2026-04-18 11:30:52] 2026-04-18 09:30:21,482 | INFO     | maximum number of monitored processes: 6
[2026-04-18 11:30:52] 2026-04-18 09:30:21,482 | INFO     | aborting job monitoring since job object (job id=7090325520) has expired
[2026-04-18 11:30:52] 2026-04-18 09:30:21,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:30:52] 2026-04-18 09:30:21,482 | INFO     | will abort loop
[2026-04-18 11:30:52] 2026-04-18 09:30:21,592 | INFO     | [payload] control thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,757 | INFO     | [job] validate thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,796 | INFO     | [job] queue monitor thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,803 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,892 | INFO     | [data] control thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,940 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:21,996 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:22,169 | INFO     | [data] copytool_in thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:22,253 | INFO     | [payload] validate_post thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:22,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 11:30:52] 2026-04-18 09:30:22,487 | INFO     | [job] job monitor thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:23,038 | INFO     | [data] copytool_out thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:26,450 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:30,421 | INFO     | job.realtimelogging is not enabled
[2026-04-18 11:30:52] 2026-04-18 09:30:31,426 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 11:30:52] 2026-04-18 09:30:39,536 [wrapper] supervise_pilot (15 min periods counter: 3)
[2026-04-18 11:30:52] 2026-04-18 09:30:46,418 | INFO     | [monitor] cgroup control has ended
[2026-04-18 11:30:52] 2026-04-18 09:30:47,252 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23206469134144)>', '<ExcThread(monitor, started 23206227613440)>']
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | INFO     | PID=594433 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | INFO     | .. there are 17 such processes running
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 11:30:52] 2026-04-18 09:30:49,662 | INFO     | [monitor] control thread has ended
[2026-04-18 11:30:52] 2026-04-18 09:30:52,277 | INFO     | all workflow threads have been joined
[2026-04-18 11:30:52] 2026-04-18 09:30:52,278 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 11:30:52] 2026-04-18 09:30:52,278 | INFO     | traces error code: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:52,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 11:30:52] 2026-04-18 09:30:52,391 [wrapper] ==== pilot stdout END ====
[2026-04-18 11:30:52] 2026-04-18 09:30:52,394 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 11:30:52] 2026-04-18 09:30:52,396 [wrapper] pilotpid: 594433
[2026-04-18 11:30:52] 2026-04-18 09:30:52,398 [wrapper] Pilot exit status: 0
[2026-04-18 11:30:52] 2026-04-18 09:30:52,406 [wrapper] pandaids: 7090325520
[2026-04-18 11:30:52] 2026-04-18 09:30:52,484 [wrapper] cleanup supervisor_pilot  870823 594435
[2026-04-18 11:30:52] 2026-04-18 09:30:52,487 [wrapper] Test setup, not cleaning
[2026-04-18 11:30:52] 2026-04-18 09:30:52,489 [wrapper] apfmon messages muted
[2026-04-18 11:30:52] 2026-04-18 09:30:52,492 [wrapper] ==== wrapper stdout END ====
[2026-04-18 11:30:52] 2026-04-18 09:30:52,494 [wrapper] ==== wrapper stderr END ====
[2026-04-18 11:30:52]  *** Error codes and diagnostics ***
[2026-04-18 11:30:52]     "exeErrorCode": 0,
[2026-04-18 11:30:52]     "pilotErrorCode": 0,
[2026-04-18 11:30:52]  *** Listing of results directory ***
[2026-04-18 11:30:52] total 421692
[2026-04-18 11:30:52] -rwx------. 1 boinc boinc     36322 Apr 18 09:34 runpilot2-wrapper.sh
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc    644190 Apr 18 09:35 pilot3.tar.gz
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc      5094 Apr 18 09:49 queuedata.json
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc       100 Apr 18 11:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 11:30:52] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 11:00 run_atlas
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc       105 Apr 18 11:00 job.xml
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc      6622 Apr 18 11:00 init_data.xml
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc 223412491 Apr 18 11:00 EVNT.49263189._000735.pool.root.1
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc     15665 Apr 18 11:00 start_atlas.sh
[2026-04-18 11:30:52] drwxrwx--x. 2 boinc boinc      4096 Apr 18 11:00 shared
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc    656926 Apr 18 11:00 input.tar.gz
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc         0 Apr 18 11:00 boinc_lockfile
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc      2577 Apr 18 11:00 pandaJob.out
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc    997965 Apr 18 11:00 agis_schedconf.cvmfs.json
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc   1512404 Apr 18 11:00 agis_ddmendpoints.agis.ALL.json
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc       444 Apr 18 11:00 workernode_map.json
[2026-04-18 11:30:52] drwx------. 5 boinc boinc      4096 Apr 18 11:00 pilot3
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc 203242289 Apr 18 11:29 HITS.49263191._072010.pool.root.1
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc       487 Apr 18 11:30 boinc_task_state.xml
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc        95 Apr 18 11:30 pilot_heartbeat.json
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc      1029 Apr 18 11:30 memory_monitor_summary.json
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc    332577 Apr 18 11:30 log.49263191._072010.job.log.tgz.1
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc      6379 Apr 18 11:30 heartbeat_new.json
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc      6270 Apr 18 11:30 heartbeat.json
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc      8192 Apr 18 11:30 boinc_mmap_file
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc        27 Apr 18 11:30 wrapper_checkpoint.txt
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc      5432 Apr 18 11:30 pilotlog.txt
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc    213559 Apr 18 11:30 log.49263191._072010.job.log.1
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc       357 Apr 18 11:30 output.list
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc       410 Apr 18 11:30 runtime_log
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc    563200 Apr 18 11:30 result.tar.gz
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc      8845 Apr 18 11:30 runtime_log.err
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc       660 Apr 18 11:30 3402dfb3c6dd.diag
[2026-04-18 11:30:52] -rw-r--r--. 1 boinc boinc     21210 Apr 18 11:30 stderr.txt
[2026-04-18 11:30:52] HITS file was successfully produced:
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc 203242289 Apr 18 11:29 shared/HITS.pool.root.1
[2026-04-18 11:30:52]  *** Contents of shared directory: ***
[2026-04-18 11:30:52] total 417880
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc 223412491 Apr 18 11:00 ATLAS.root_0
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc     15665 Apr 18 11:00 start_atlas.sh
[2026-04-18 11:30:52] -rw-r--r--. 2 boinc boinc    656926 Apr 18 11:00 input.tar.gz
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc 203242289 Apr 18 11:29 HITS.pool.root.1
[2026-04-18 11:30:52] -rw-------. 1 boinc boinc    563200 Apr 18 11:30 result.tar.gz
11:30:54 (585462): run_atlas exited; CPU time 18440.856402
11:30:54 (585462): called boinc_finish(0)

</stderr_txt>
]]>

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