Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:49:29 (15366): wrapper (7.7.26015): starting
09:49:29 (15366): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 09:49:29] Arguments: --nthreads 8
[2026-04-18 09:49:29] Threads: 8
[2026-04-18 09:49:29] Checking for CVMFS
[2026-04-18 09:49:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 09:49:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 09:49:31] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 09:49:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 09:49:33] 2.11.2.0 24173 3799 95316 158576 1 13 17319777 25165824 1060 130560 0 730019 99.518 3887779 39656 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 09:49:33] CVMFS is ok
[2026-04-18 09:49:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 09:49:33] Checking for apptainer binary...
[2026-04-18 09:49:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 09:49:33] Running /usr/bin/apptainer --version
[2026-04-18 09:49:33] apptainer version 1.3.2-1.el7
[2026-04-18 09:49:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 09:49:38] cg-vwn464.simple-grid.lan
[2026-04-18 09:49:38] apptainer works
[2026-04-18 09:49:38] Set ATHENA_PROC_NUMBER=8
[2026-04-18 09:49:38] Set ATHENA_CORE_NUMBER=8
[2026-04-18 09:49:38] Starting ATLAS job with PandaID=7097081154
[2026-04-18 09:49:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 14:06:09]  *** The last 200 lines of the pilot log: ***
[2026-04-18 14:06:09] 2026-04-18 12:04:56,573 | INFO     | this job has now completed (state=finished)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,574 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,574 | INFO     | log transfer has been attempted: DONE
[2026-04-18 14:06:09] 2026-04-18 12:04:56,574 | INFO     | job 7097081154 has finished - writing final server update
[2026-04-18 14:06:09] 2026-04-18 12:04:56,574 | INFO     | total number of processed events: 400 (read)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,576 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-7097081154/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,577 | INFO     | extracted standard info from prmon json
[2026-04-18 14:06:09] 2026-04-18 12:04:56,577 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 14:06:09] 2026-04-18 12:04:56,578 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 14:06:09] 2026-04-18 12:04:56,578 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 14:06:09] 2026-04-18 12:04:56,582 | INFO     | fitting pss+swap vs Time
[2026-04-18 14:06:09] 2026-04-18 12:04:56,583 | INFO     | sum of square deviations: 4287272506.5625
[2026-04-18 14:06:09] 2026-04-18 12:04:56,585 | INFO     | sum of deviations: 152498505542.375
[2026-04-18 14:06:09] 2026-04-18 12:04:56,585 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,585 | INFO     | mean y: 2427103.6083333334
[2026-04-18 14:06:09] 2026-04-18 12:04:56,585 | INFO     | intersect: 2427103.6083333334
[2026-04-18 14:06:09] 2026-04-18 12:04:56,586 | INFO     | chi2: 9.620349730430755
[2026-04-18 14:06:09] 2026-04-18 12:04:56,586 | INFO     | sum of square deviations: 4024854469.148945
[2026-04-18 14:06:09] 2026-04-18 12:04:56,588 | INFO     | sum of deviations: 165111048150.00012
[2026-04-18 14:06:09] 2026-04-18 12:04:56,589 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,589 | INFO     | mean y: 2434275.2
[2026-04-18 14:06:09] 2026-04-18 12:04:56,589 | INFO     | intersect: 2434275.2
[2026-04-18 14:06:09] 2026-04-18 12:04:56,589 | INFO     | chi2: 8.92650690758702
[2026-04-18 14:06:09] 2026-04-18 12:04:56,589 | INFO     | current chi2=8.92650690758702 (change=7.212241158437256 %)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,590 | INFO     | right removable region: 234
[2026-04-18 14:06:09] 2026-04-18 12:04:56,590 | INFO     | sum of square deviations: 4024881921.0638256
[2026-04-18 14:06:09] 2026-04-18 12:04:56,595 | INFO     | sum of deviations: 64003503397.87231
[2026-04-18 14:06:09] 2026-04-18 12:04:56,595 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,595 | INFO     | mean y: 2478544.5617021276
[2026-04-18 14:06:09] 2026-04-18 12:04:56,596 | INFO     | intersect: 2478544.5617021276
[2026-04-18 14:06:09] 2026-04-18 12:04:56,596 | INFO     | chi2: 3.8972143756094755
[2026-04-18 14:06:09] 2026-04-18 12:04:56,596 | INFO     | current chi2=3.8972143756094755 (change=59.489888779386646 %)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,597 | INFO     | sum of square deviations: 3773421773.0434885
[2026-04-18 14:06:09] 2026-04-18 12:04:56,599 | INFO     | sum of deviations: -2122340080.652174
[2026-04-18 14:06:09] 2026-04-18 12:04:56,599 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,599 | INFO     | mean y: 2518571.5086956522
[2026-04-18 14:06:09] 2026-04-18 12:04:56,599 | INFO     | intersect: 2518571.5086956522
[2026-04-18 14:06:09] 2026-04-18 12:04:56,599 | INFO     | chi2: 0.9380767369524339
[2026-04-18 14:06:09] 2026-04-18 12:04:56,600 | INFO     | current chi2=0.9380767369524339 (change=75.92955771631807 %)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,600 | INFO     | sum of square deviations: 3532659500.00002
[2026-04-18 14:06:09] 2026-04-18 12:04:56,602 | INFO     | sum of deviations: -11474601385.333332
[2026-04-18 14:06:09] 2026-04-18 12:04:56,602 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,602 | INFO     | mean y: 2524450.7644444443
[2026-04-18 14:06:09] 2026-04-18 12:04:56,602 | INFO     | intersect: 2524450.7644444443
[2026-04-18 14:06:09] 2026-04-18 12:04:56,607 | INFO     | chi2: 0.8588545397358505
[2026-04-18 14:06:09] 2026-04-18 12:04:56,607 | INFO     | current chi2=0.8588545397358505 (change=8.445172350607011 %)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,607 | INFO     | left removable region: 15
[2026-04-18 14:06:09] 2026-04-18 12:04:56,608 | INFO     | sum of square deviations: 3257511067.260276
[2026-04-18 14:06:09] 2026-04-18 12:04:56,609 | INFO     | sum of deviations: 3666081288.520545
[2026-04-18 14:06:09] 2026-04-18 12:04:56,609 | INFO     | mean x (centered): 0.0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,610 | INFO     | mean y: 2534295.6301369863
[2026-04-18 14:06:09] 2026-04-18 12:04:56,610 | INFO     | intersect: 2534295.6301369863
[2026-04-18 14:06:09] 2026-04-18 12:04:56,610 | INFO     | chi2: 0.06288845065531624
[2026-04-18 14:06:09] 2026-04-18 12:04:56,610 | INFO     | current memory leak: 1.13 B/s (using 219 data points, chi2=0.06)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,611 | INFO     | could have reported an average CPU frequency of 2250 MHz (12 samples)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,611 | INFO     | ..............................
[2026-04-18 14:06:09] 2026-04-18 12:04:56,611 | INFO     | . Timing measurements:
[2026-04-18 14:06:09] 2026-04-18 12:04:56,611 | INFO     | . get job = 0 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,611 | INFO     | . initial setup = 105 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | . payload setup = 205 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | . stage-in = 0 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | . payload execution = 14747 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | . stage-out = 3 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | . log creation = 1 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,612 | INFO     | ..............................
[2026-04-18 14:06:09] 2026-04-18 12:04:56,764 | INFO     | 
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | job summary report
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | --------------------------------------------------
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | PanDA job id: 7097081154
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | task id: 49545114
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | errors: (none)
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 14:06:09] 2026-04-18 12:04:56,765 | INFO     | pilot state: finished 
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | transexitcode: 0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | exeerrorcode: 0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | exeerrordiag: 
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | exitcode: 0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | exitmsg: OK
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | cpuconsumptiontime: 54911 s
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | nevents: 400
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | neventsw: 0
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | pid: 23760
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | pgrp: 23760
[2026-04-18 14:06:09] 2026-04-18 12:04:56,766 | INFO     | corecount: 8
[2026-04-18 14:06:09] 2026-04-18 12:04:56,767 | INFO     | event service: False
[2026-04-18 14:06:09] 2026-04-18 12:04:56,767 | INFO     | sizes: {0: 2280966, 1: 2281652, 2: 2283481, 14957: 2314414, 14958: 2314413, 14962: 2323653, 14963: 2323791}
[2026-04-18 14:06:09] 2026-04-18 12:04:56,767 | INFO     | --------------------------------------------------
[2026-04-18 14:06:09] 2026-04-18 12:04:56,767 | INFO     | 
[2026-04-18 14:06:09] 2026-04-18 12:04:56,767 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-04-18 14:06:09] 2026-04-18 12:04:57,329 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,329 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,329 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 14:06:09] 2026-04-18 12:04:57,332 | INFO     | job 7097081154 has completed (purged errors)
[2026-04-18 14:06:09] 2026-04-18 12:04:57,332 | INFO     | overall cleanup function is called
[2026-04-18 14:06:09] 2026-04-18 12:04:58,339 | INFO     | --- collectZombieJob: --- 10, [23760]
[2026-04-18 14:06:09] 2026-04-18 12:04:58,340 | INFO     | zombie collector waiting for pid 23760
[2026-04-18 14:06:09] 2026-04-18 12:04:58,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 14:06:09] 2026-04-18 12:04:58,340 | INFO     | collected zombie processes
[2026-04-18 14:06:09] 2026-04-18 12:04:58,340 | INFO     | will attempt to kill all subprocesses of pid=23760
[2026-04-18 14:06:09] 2026-04-18 12:04:58,446 | INFO     | process IDs to be killed: [23760] (in reverse order)
[2026-04-18 14:06:09] 2026-04-18 12:04:59,345 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 14:06:09] 2026-04-18 12:04:59,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 14:06:09] 2026-04-18 12:04:59,347 | INFO     | did not find any defunct processes belonging to 23760
[2026-04-18 14:06:09] 2026-04-18 12:04:59,349 | INFO     | did not find any defunct processes belonging to 23760
[2026-04-18 14:06:09] 2026-04-18 12:04:59,349 | INFO     | Ready for new job
[2026-04-18 14:06:09] 2026-04-18 12:04:59,351 | INFO     | **************************************
[2026-04-18 14:06:09] 2026-04-18 12:04:59,351 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 14:06:09] 2026-04-18 12:04:59,351 | INFO     | **************************************
[2026-04-18 14:06:09] 2026-04-18 12:04:59,351 | INFO     | 
[2026-04-18 14:06:09] 2026-04-18 12:04:59,352 | INFO     | pilot is running in a VM
[2026-04-18 14:06:09] 2026-04-18 12:04:59,352 | INFO     | architecture information:
[2026-04-18 14:06:09] 2026-04-18 12:04:59,359 | INFO     | executing command: cat /etc/os-release
[2026-04-18 14:06:09] 2026-04-18 12:04:59,675 | INFO     | cat /etc/os-release:
[2026-04-18 14:06:09] NAME="CentOS Linux"
[2026-04-18 14:06:09] VERSION="7 (Core)"
[2026-04-18 14:06:09] ID="centos"
[2026-04-18 14:06:09] ID_LIKE="rhel fedora"
[2026-04-18 14:06:09] VERSION_ID="7"
[2026-04-18 14:06:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 14:06:09] ANSI_COLOR="0;31"
[2026-04-18 14:06:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 14:06:09] HOME_URL="https://www.centos.org/"
[2026-04-18 14:06:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 14:06:09] 
[2026-04-18 14:06:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 14:06:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 14:06:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 14:06:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 14:06:09] 
[2026-04-18 14:06:09] 2026-04-18 12:04:59,675 | INFO     | **************************************
[2026-04-18 14:06:09] 2026-04-18 12:05:00,179 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-04-18 14:06:09] 2026-04-18 12:05:00,490 | INFO     | sufficient remaining disk space (496135831552 B)
[2026-04-18 14:06:09] 2026-04-18 12:05:00,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 14:06:09] 2026-04-18 12:05:00,491 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 14:06:09] 2026-04-18 12:05:00,491 | INFO     | update_server=False
[2026-04-18 14:06:09] 2026-04-18 12:05:00,491 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 14:06:09] 2026-04-18 12:05:00,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 14:06:09] 2026-04-18 12:05:00,727 | INFO     | aborting loop
[2026-04-18 14:06:09] 2026-04-18 12:05:00,890 | INFO     | all data control threads have been joined
[2026-04-18 14:06:09] 2026-04-18 12:05:01,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 14:06:09] 2026-04-18 12:05:01,231 | INFO     | all payload control threads have been joined
[2026-04-18 14:06:09] 2026-04-18 12:05:01,497 | INFO     | [job] retrieve thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:01,522 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:01,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 14:06:09] 2026-04-18 12:05:01,733 | INFO     | [job] job monitor thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:01,755 | INFO     | [payload] validate_post thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:01,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 14:06:09] 2026-04-18 12:05:01,896 | INFO     | [data] control thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:01,958 | INFO     | all job control threads have been joined
[2026-04-18 14:06:09] 2026-04-18 12:05:02,237 | INFO     | [payload] control thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,239 | INFO     | [job] validate thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,252 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,302 | INFO     | [payload] failed_post thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,417 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,503 | INFO     | [data] copytool_in thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,785 | INFO     | [job] queue monitor thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,950 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:02,965 | INFO     | [job] control thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:03,021 | INFO     | [data] copytool_out thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:05,646 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 14:06:09] 2026-04-18 12:05:29,530 | INFO     | PID=19329 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-18 14:06:09] 2026-04-18 12:05:29,530 | INFO     | .. there are 2 such processes running
[2026-04-18 14:06:09] 2026-04-18 12:05:29,531 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 14:06:09] 2026-04-18 12:05:29,532 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 14:06:09] 2026-04-18 12:05:29,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 14:06:09] 2026-04-18 12:05:56,729 | INFO     | [monitor] cgroup control has ended
[2026-04-18 14:06:09] 2026-04-18 12:05:58,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343409989440)>', '<ExcThread(monitor, started 140343123097344)>']
[2026-04-18 14:06:09] 2026-04-18 12:05:58,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 14:06:09] 2026-04-18 12:05:58,706 | INFO     | [monitor] control thread has ended
[2026-04-18 14:06:09] 2026-04-18 12:06:03,123 | INFO     | all workflow threads have been joined
[2026-04-18 14:06:09] 2026-04-18 12:06:03,123 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 14:06:09] 2026-04-18 12:06:03,123 | INFO     | traces error code: 0
[2026-04-18 14:06:09] 2026-04-18 12:06:03,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 14:06:09] 2026-04-18 12:06:03,496 [wrapper] ==== pilot stdout END ====
[2026-04-18 14:06:09] 2026-04-18 12:06:03,589 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 14:06:09] 2026-04-18 12:06:03,700 [wrapper] pilotpid: 19329
[2026-04-18 14:06:09] 2026-04-18 12:06:03,808 [wrapper] Pilot exit status: 0
[2026-04-18 14:06:09] 2026-04-18 12:06:04,430 [wrapper] pandaids: 7097081154
[2026-04-18 14:06:09] 2026-04-18 12:06:06,136 [wrapper] cleanup supervisor_pilot 29992 19330
[2026-04-18 14:06:09] 2026-04-18 12:06:06,295 [wrapper] Test setup, not cleaning
[2026-04-18 14:06:09] 2026-04-18 12:06:06,394 [wrapper] apfmon messages muted
[2026-04-18 14:06:09] 2026-04-18 12:06:06,528 [wrapper] ==== wrapper stdout END ====
[2026-04-18 14:06:09] 2026-04-18 12:06:06,626 [wrapper] ==== wrapper stderr END ====
[2026-04-18 14:06:09]  *** Error codes and diagnostics ***
[2026-04-18 14:06:09]     "exeErrorCode": 0,
[2026-04-18 14:06:09]     "pilotErrorCode": 0,
[2026-04-18 14:06:09]  *** Listing of results directory ***
[2026-04-18 14:06:09] total 453404
[2026-04-18 14:06:09] -rwx------. 1 boinc boinc     36322 Apr 18 09:03 runpilot2-wrapper.sh
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc    644190 Apr 18 09:21 pilot3.tar.gz
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc      5094 Apr 18 09:24 queuedata.json
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc       100 Apr 18 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 14:06:09] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 09:49 run_atlas
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc       105 Apr 18 09:49 job.xml
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc 276079522 Apr 18 09:49 EVNT.49539591._000200.pool.root.1
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc     15665 Apr 18 09:49 start_atlas.sh
[2026-04-18 14:06:09] drwxrwx--x. 2 boinc boinc        68 Apr 18 09:49 shared
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc    656945 Apr 18 09:49 input.tar.gz
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc      6308 Apr 18 09:49 init_data.xml
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc         0 Apr 18 09:49 boinc_lockfile
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc      2602 Apr 18 09:49 pandaJob.out
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc       413 Apr 18 09:55 workernode_map.json
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc    997893 Apr 18 09:55 agis_schedconf.cvmfs.json
[2026-04-18 14:06:09] drwx------. 5 boinc boinc      4096 Apr 18 09:55 pilot3
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc 180608767 Apr 18 14:03 HITS.49545114._023876.pool.root.1
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc       489 Apr 18 14:04 boinc_task_state.xml
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc      1012 Apr 18 14:04 memory_monitor_summary.json
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc   1512404 Apr 18 14:04 agis_ddmendpoints.agis.ALL.json
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc    385747 Apr 18 14:04 log.49545114._023876.job.log.tgz.1
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc      6330 Apr 18 14:04 heartbeat_new.json
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc      6221 Apr 18 14:04 heartbeat.json
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc        95 Apr 18 14:05 pilot_heartbeat.json
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc      8192 Apr 18 14:05 boinc_mmap_file
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc        28 Apr 18 14:05 wrapper_checkpoint.txt
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc      4880 Apr 18 14:06 pilotlog.txt
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc   1389930 Apr 18 14:06 log.49545114._023876.job.log.1
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc       357 Apr 18 14:06 output.list
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc       410 Apr 18 14:06 runtime_log
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc   1792000 Apr 18 14:06 result.tar.gz
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc      8454 Apr 18 14:06 runtime_log.err
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc       656 Apr 18 14:06 2cd98774f727.diag
[2026-04-18 14:06:09] -rw-r--r--. 1 boinc boinc     20648 Apr 18 14:06 stderr.txt
[2026-04-18 14:06:09] HITS file was successfully produced:
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc 180608767 Apr 18 14:03 shared/HITS.pool.root.1
[2026-04-18 14:06:09]  *** Contents of shared directory: ***
[2026-04-18 14:06:09] total 448400
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc 276079522 Apr 18 09:49 ATLAS.root_0
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc     15665 Apr 18 09:49 start_atlas.sh
[2026-04-18 14:06:09] -rw-r--r--. 2 boinc boinc    656945 Apr 18 09:49 input.tar.gz
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc 180608767 Apr 18 14:03 HITS.pool.root.1
[2026-04-18 14:06:09] -rw-------. 1 boinc boinc   1792000 Apr 18 14:06 result.tar.gz
14:06:11 (15366): run_atlas exited; CPU time 55059.726349
14:06:11 (15366): called boinc_finish(0)

</stderr_txt>
]]>

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