Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:36 (2361793): wrapper (7.7.26015): starting
11:04:36 (2361793): wrapper: running run_atlas (--nthreads 12)
[2026-04-18 11:04:36] Arguments: --nthreads 12
[2026-04-18 11:04:36] Threads: 12
[2026-04-18 11:04:36] Checking for CVMFS
[2026-04-18 11:04:36] No cvmfs_config command found, will try listing directly
[2026-04-18 11:04:36] CVMFS is ok
[2026-04-18 11:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 11:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 11:04:36] Further information can be found at the LHC@home message board.
[2026-04-18 11:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 11:04:36] Checking for apptainer binary...
[2026-04-18 11:04:36] which: no apptainer in ((null))
[2026-04-18 11:04:36] apptainer is not installed, using version from CVMFS
[2026-04-18 11:04:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 11:04:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-04-18 11:04:36] apptainer works
[2026-04-18 11:04:36] Set ATHENA_PROC_NUMBER=12
[2026-04-18 11:04:36] Set ATHENA_CORE_NUMBER=12
[2026-04-18 11:04:36] Starting ATLAS job with PandaID=7096908899
[2026-04-18 11:04:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 11:36:05]  *** The last 200 lines of the pilot log: ***
[2026-04-18 11:36:05]  lfn=log.49545114._023117.job.log.tgz.1
[2026-04-18 11:36:05]  mtime=0
[2026-04-18 11:36:05]  protocol_id=None
[2026-04-18 11:36:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-18 11:36:05]  replicas=None
[2026-04-18 11:36:05]  scope=mc23_13p6TeV
[2026-04-18 11:36:05]  status=None
[2026-04-18 11:36:05]  status_code=0
[2026-04-18 11:36:05]  storage_token=
[2026-04-18 11:36:05]  surl=/var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7096908899/log.49545114._023117.job.log.tgz.1
[2026-04-18 11:36:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/83/log.49545114._023117.job.log.tgz.1
[2026-04-18 11:36:05]  workdir=None
[2026-04-18 11:36:05] ]
[2026-04-18 11:36:05] 2026-04-18 09:35:32,030 | INFO     | transferring file log.49545114._023117.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7096908899/log.49545114._023117.job.log.tgz.1 to /var/lib/b
[2026-04-18 11:36:05] 2026-04-18 09:35:32,030 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7096908899/log.49545114._023117.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/6/lo
[2026-04-18 11:36:05] 2026-04-18 09:35:32,046 | INFO     | adding to output.list: log.49545114._023117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/83/log.49545114._023117.job.log.tg
[2026-04-18 11:36:05] 2026-04-18 09:35:32,046 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-18 11:36:05] 2026-04-18 09:35:32,046 | INFO     | summary of transferred files:
[2026-04-18 11:36:05] 2026-04-18 09:35:32,046 | INFO     |  -- lfn=log.49545114._023117.job.log.tgz.1, status_code=0, status=transferred
[2026-04-18 11:36:05] 2026-04-18 09:35:32,046 | INFO     | stage-out finished correctly
[2026-04-18 11:36:05] 2026-04-18 09:35:32,328 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-18 11:36:05] 2026-04-18 09:35:32,859 | INFO     | PID=2366320 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-18 11:36:05] 2026-04-18 09:35:32,859 | INFO     | .. there are 18 such processes running
[2026-04-18 11:36:05] 2026-04-18 09:35:33,261 | INFO     | job 7096908899 has state=finished
[2026-04-18 11:36:05] 2026-04-18 09:35:33,262 | INFO     | preparing for final server update for job 7096908899 in state='finished'
[2026-04-18 11:36:05] 2026-04-18 09:35:33,262 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7096908899/jobReport.json
[2026-04-18 11:36:05] 2026-04-18 09:35:33,263 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/6/workernode_map.json
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | INFO     | this job has now completed (state=finished)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | INFO     | log transfer has been attempted: DONE
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | INFO     | job 7096908899 has finished - writing final server update
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_996446/.job.ad'
[2026-04-18 11:36:05] 2026-04-18 09:35:33,264 | INFO     | total number of processed events: 400 (read)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,282 | INFO     | using path: /var/lib/boinc/var/slot48/slots/6/PanDA_Pilot-7096908899/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,282 | INFO     | extracted standard info from prmon json
[2026-04-18 11:36:05] 2026-04-18 09:35:33,282 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 11:36:05] 2026-04-18 09:35:33,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 11:36:05] 2026-04-18 09:35:33,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | fitting pss+swap vs Time
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | sum of square deviations: 3765652.0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | sum of deviations: 29611046.999999996
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | mean x (centered): 0.0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | mean y: 2729615.1304347827
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | intersect: 2729615.1304347827
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | chi2: 0.00018174661735893298
[2026-04-18 11:36:05] 2026-04-18 09:35:33,283 | INFO     | current memory leak: 7.86 B/s (using 23 data points, chi2=0.00)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | could have reported an average CPU frequency of 3622 MHz (5 samples)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | ..............................
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . Timing measurements:
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . get job = 0 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . initial setup = 4 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . payload setup = 6 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . stage-in = 0 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . payload execution = 1821 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . stage-out = 0 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | . log creation = 0 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,284 | INFO     | ..............................
[2026-04-18 11:36:05] 2026-04-18 09:35:33,798 | INFO     | 
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | job summary report
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | --------------------------------------------------
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | PanDA job id: 7096908899
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | task id: 49545114
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | errors: (none)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | pilot state: finished 
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | transexitcode: 0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | exeerrorcode: 0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | exeerrordiag: 
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | exitcode: 0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | exitmsg: OK
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | cpuconsumptiontime: 19046 s
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | nevents: 400
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | neventsw: 0
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | pid: 2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | pgrp: 2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | corecount: 12
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | event service: False
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | sizes: {0: 2281807, 1: 2283437, 11: 2283465, 1831: 2308389, 1832: 2308388, 1833: 2317648, 1834: 2317818}
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | --------------------------------------------------
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | 
[2026-04-18 11:36:05] 2026-04-18 09:35:33,799 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/6
[2026-04-18 11:36:05] 2026-04-18 09:35:33,821 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,821 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | job 7096908899 has completed (purged errors)
[2026-04-18 11:36:05] 2026-04-18 09:35:33,822 | INFO     | overall cleanup function is called
[2026-04-18 11:36:05] 2026-04-18 09:35:34,830 | INFO     | --- collectZombieJob: --- 10, [2372303]
[2026-04-18 11:36:05] 2026-04-18 09:35:34,830 | INFO     | zombie collector waiting for pid 2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:34,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 11:36:05] 2026-04-18 09:35:34,830 | INFO     | collected zombie processes
[2026-04-18 11:36:05] 2026-04-18 09:35:34,830 | INFO     | will attempt to kill all subprocesses of pid=2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:35,145 | INFO     | process IDs to be killed: [2372303] (in reverse order)
[2026-04-18 11:36:05] 2026-04-18 09:35:35,277 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 11:36:05] 2026-04-18 09:35:35,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 11:36:05] 2026-04-18 09:35:35,294 | INFO     | did not find any defunct processes belonging to 2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:35,307 | INFO     | did not find any defunct processes belonging to 2372303
[2026-04-18 11:36:05] 2026-04-18 09:35:35,307 | INFO     | Ready for new job
[2026-04-18 11:36:05] 2026-04-18 09:35:35,308 | INFO     | **************************************
[2026-04-18 11:36:05] 2026-04-18 09:35:35,308 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 11:36:05] 2026-04-18 09:35:35,308 | INFO     | **************************************
[2026-04-18 11:36:05] 2026-04-18 09:35:35,308 | INFO     | 
[2026-04-18 11:36:05] 2026-04-18 09:35:35,311 | INFO     | architecture information:
[2026-04-18 11:36:05] 2026-04-18 09:35:35,312 | INFO     | executing command: cat /etc/os-release
[2026-04-18 11:36:05] 2026-04-18 09:35:35,325 | INFO     | cat /etc/os-release:
[2026-04-18 11:36:05] NAME="CentOS Linux"
[2026-04-18 11:36:05] VERSION="7 (Core)"
[2026-04-18 11:36:05] ID="centos"
[2026-04-18 11:36:05] ID_LIKE="rhel fedora"
[2026-04-18 11:36:05] VERSION_ID="7"
[2026-04-18 11:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 11:36:05] ANSI_COLOR="0;31"
[2026-04-18 11:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 11:36:05] HOME_URL="https://www.centos.org/"
[2026-04-18 11:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 11:36:05] 
[2026-04-18 11:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 11:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 11:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 11:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 11:36:05] 
[2026-04-18 11:36:05] 2026-04-18 09:35:35,325 | INFO     | **************************************
[2026-04-18 11:36:05] 2026-04-18 09:35:35,827 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/6
[2026-04-18 11:36:05] 2026-04-18 09:35:35,843 | INFO     | sufficient remaining disk space (170479583232 B)
[2026-04-18 11:36:05] 2026-04-18 09:35:35,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 11:36:05] 2026-04-18 09:35:35,843 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 11:36:05] 2026-04-18 09:35:35,843 | INFO     | update_server=False
[2026-04-18 11:36:05] 2026-04-18 09:35:35,843 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 11:36:05] 2026-04-18 09:35:35,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 11:36:05] 2026-04-18 09:35:36,116 | INFO     | all job control threads have been joined
[2026-04-18 11:36:05] 2026-04-18 09:35:36,169 | WARNING  | process 2372303 can no longer be monitored (due to stat problems) - aborting
[2026-04-18 11:36:05] 2026-04-18 09:35:36,388 | INFO     | all data control threads have been joined
[2026-04-18 11:36:05] 2026-04-18 09:35:36,405 | INFO     | using path: /var/lib/boinc/var/slot48/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 11:36:05] 2026-04-18 09:35:36,405 | INFO     | reaping zombies for max 20 seconds
[2026-04-18 11:36:05] 2026-04-18 09:35:36,418 | INFO     | checking for looping job (in state=finished)
[2026-04-18 11:36:05] 2026-04-18 09:35:36,418 | INFO     | using looping job limit: 7200 s
[2026-04-18 11:36:05] 2026-04-18 09:35:36,486 | INFO     | all payload control threads have been joined
[2026-04-18 11:36:05] 2026-04-18 09:35:36,730 | INFO     | number of running child processes to parent process 2372303: 1
[2026-04-18 11:36:05] 2026-04-18 09:35:36,730 | INFO     | maximum number of monitored processes: 6
[2026-04-18 11:36:05] 2026-04-18 09:35:36,730 | INFO     | aborting job monitoring since job object (job id=7096908899) has expired
[2026-04-18 11:36:05] 2026-04-18 09:35:36,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:36:05] 2026-04-18 09:35:36,730 | INFO     | will abort loop
[2026-04-18 11:36:05] 2026-04-18 09:35:36,848 | INFO     | [job] retrieve thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,122 | INFO     | [job] control thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,393 | INFO     | [data] control thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,492 | INFO     | [payload] control thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,545 | INFO     | [payload] failed_post thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,735 | INFO     | [job] job monitor thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,775 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,849 | INFO     | [data] copytool_out thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,938 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,941 | INFO     | [job] validate thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:37,986 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:38,221 | INFO     | [payload] validate_post thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:38,256 | INFO     | [data] copytool_in thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:38,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:36:05] 2026-04-18 09:35:38,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 11:36:05] 2026-04-18 09:35:39,350 | INFO     | [job] queue monitor thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:42,388 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:45,955 | INFO     | job.realtimelogging is not enabled
[2026-04-18 11:36:05] 2026-04-18 09:35:46,961 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 11:36:05] 2026-04-18 09:35:50,604 | INFO     | [monitor] cgroup control has ended
[2026-04-18 11:36:05] 2026-04-18 09:35:50,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23115998025536)>', '<ExcThread(monitor, started 23115756476160)>']
[2026-04-18 11:36:05] 2026-04-18 09:35:55,658 | INFO     | all workflow threads have been joined
[2026-04-18 11:36:05] 2026-04-18 09:35:55,658 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 11:36:05] 2026-04-18 09:35:55,658 | INFO     | traces error code: 0
[2026-04-18 11:36:05] 2026-04-18 09:35:55,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | INFO     | PID=2366320 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | INFO     | .. there are 18 such processes running
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 11:36:05] 2026-04-18 09:36:05,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 11:36:05] 2026-04-18 09:36:05,340 | INFO     | [monitor] control thread has ended
[2026-04-18 11:36:05] 2026-04-18 09:36:05,451 [wrapper] ==== pilot stdout END ====
[2026-04-18 11:36:05] 2026-04-18 09:36:05,453 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 11:36:05] 2026-04-18 09:36:05,456 [wrapper] pilotpid: 2366320
[2026-04-18 11:36:05] 2026-04-18 09:36:05,458 [wrapper] Pilot exit status: 0
[2026-04-18 11:36:05] 2026-04-18 09:36:05,466 [wrapper] pandaids: 7096908899
[2026-04-18 11:36:05] 2026-04-18 09:36:05,549 [wrapper] cleanup supervisor_pilot 2583413 2366321
[2026-04-18 11:36:05] 2026-04-18 09:36:05,552 [wrapper] Test setup, not cleaning
[2026-04-18 11:36:05] 2026-04-18 09:36:05,554 [wrapper] apfmon messages muted
[2026-04-18 11:36:05] 2026-04-18 09:36:05,557 [wrapper] ==== wrapper stdout END ====
[2026-04-18 11:36:05] 2026-04-18 09:36:05,559 [wrapper] ==== wrapper stderr END ====
[2026-04-18 11:36:05]  *** Error codes and diagnostics ***
[2026-04-18 11:36:05]     "exeErrorCode": 0,
[2026-04-18 11:36:05]     "pilotErrorCode": 0,
[2026-04-18 11:36:05]  *** Listing of results directory ***
[2026-04-18 11:36:05] total 463296
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc    644190 Apr 18 08:34 pilot3.tar.gz
[2026-04-18 11:36:05] -rwx------. 1 boinc boinc     36322 Apr 18 08:35 runpilot2-wrapper.sh
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc      5094 Apr 18 08:59 queuedata.json
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc       100 Apr 18 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 11:36:05] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 11:04 run_atlas
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc       105 Apr 18 11:04 job.xml
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc      6623 Apr 18 11:04 init_data.xml
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc 281490007 Apr 18 11:04 EVNT.49539591._000157.pool.root.1
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc    656936 Apr 18 11:04 input.tar.gz
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc     15665 Apr 18 11:04 start_atlas.sh
[2026-04-18 11:36:05] drwxrwx--x. 2 boinc boinc      4096 Apr 18 11:04 shared
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc         0 Apr 18 11:04 boinc_lockfile
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc      2603 Apr 18 11:04 pandaJob.out
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc    997965 Apr 18 11:04 agis_schedconf.cvmfs.json
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc   1512404 Apr 18 11:04 agis_ddmendpoints.agis.ALL.json
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc       443 Apr 18 11:04 workernode_map.json
[2026-04-18 11:36:05] drwx------. 5 boinc boinc      4096 Apr 18 11:04 pilot3
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc 187769865 Apr 18 11:35 HITS.49545114._023117.pool.root.1
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc       487 Apr 18 11:35 boinc_task_state.xml
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc        95 Apr 18 11:35 pilot_heartbeat.json
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc      1029 Apr 18 11:35 memory_monitor_summary.json
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc    326536 Apr 18 11:35 log.49545114._023117.job.log.tgz.1
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc      6371 Apr 18 11:35 heartbeat_new.json
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc      6262 Apr 18 11:35 heartbeat.json
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc        27 Apr 18 11:36 wrapper_checkpoint.txt
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc      8192 Apr 18 11:36 boinc_mmap_file
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc       823 Apr 18 11:36 pilotlog.txt
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc    221601 Apr 18 11:36 log.49545114._023117.job.log.1
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc       357 Apr 18 11:36 output.list
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc       410 Apr 18 11:36 runtime_log
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc    563200 Apr 18 11:36 result.tar.gz
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc      8828 Apr 18 11:36 runtime_log.err
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc       660 Apr 18 11:36 264df2a6d093.diag
[2026-04-18 11:36:05] -rw-r--r--. 1 boinc boinc     21472 Apr 18 11:36 stderr.txt
[2026-04-18 11:36:05] HITS file was successfully produced:
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc 187769865 Apr 18 11:35 shared/HITS.pool.root.1
[2026-04-18 11:36:05]  *** Contents of shared directory: ***
[2026-04-18 11:36:05] total 459488
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc 281490007 Apr 18 11:04 ATLAS.root_0
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc    656936 Apr 18 11:04 input.tar.gz
[2026-04-18 11:36:05] -rw-r--r--. 2 boinc boinc     15665 Apr 18 11:04 start_atlas.sh
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc 187769865 Apr 18 11:35 HITS.pool.root.1
[2026-04-18 11:36:05] -rw-------. 1 boinc boinc    563200 Apr 18 11:36 result.tar.gz
11:36:06 (2361793): run_atlas exited; CPU time 19094.876592
11:36:06 (2361793): called boinc_finish(0)

</stderr_txt>
]]>

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