Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:17:10 (829680): wrapper (7.7.26015): starting
13:17:10 (829680): wrapper: running run_atlas (--nthreads 4)
[2026-04-18 13:17:10] Arguments: --nthreads 4
[2026-04-18 13:17:10] Threads: 4
[2026-04-18 13:17:10] Checking for CVMFS
[2026-04-18 13:17:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 13:17:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 13:17:11] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 13:17:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 13:17:11] 2.9.2.0 745507 445 70472 158583 3 50 34092885 36864001 0 130560 0 328755 99.981 25450 10551 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 13:17:11] CVMFS is ok
[2026-04-18 13:17:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 13:17:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 13:17:11] Further information can be found at the LHC@home message board.
[2026-04-18 13:17:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 13:17:11] Checking for apptainer binary...
[2026-04-18 13:17:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 13:17:11] Running /usr/bin/apptainer --version
[2026-04-18 13:17:11] apptainer version 1.4.1-1.1
[2026-04-18 13:17:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 13:17:11] cosA131
[2026-04-18 13:17:11] apptainer works
[2026-04-18 13:17:11] Set ATHENA_PROC_NUMBER=4
[2026-04-18 13:17:11] Set ATHENA_CORE_NUMBER=4
[2026-04-18 13:17:11] Starting ATLAS job with PandaID=7096683267
[2026-04-18 13:17:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 14:28:38]  *** The last 200 lines of the pilot log: ***
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,259 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 14:28:38] 2026-04-18 12:28:25,260 | INFO     | job 7096683267 has completed (purged errors)
[2026-04-18 14:28:38] 2026-04-18 12:28:25,260 | INFO     | overall cleanup function is called
[2026-04-18 14:28:38] 2026-04-18 12:28:26,264 | INFO     | --- collectZombieJob: --- 10, [838317]
[2026-04-18 14:28:38] 2026-04-18 12:28:26,264 | INFO     | zombie collector waiting for pid 838317
[2026-04-18 14:28:38] 2026-04-18 12:28:26,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 14:28:38] 2026-04-18 12:28:26,265 | INFO     | collected zombie processes
[2026-04-18 14:28:38] 2026-04-18 12:28:26,265 | INFO     | will attempt to kill all subprocesses of pid=838317
[2026-04-18 14:28:38] 2026-04-18 12:28:26,309 | INFO     | process IDs to be killed: [838317] (in reverse order)
[2026-04-18 14:28:38] 2026-04-18 12:28:26,342 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 14:28:38] 2026-04-18 12:28:26,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 14:28:38] 2026-04-18 12:28:26,344 | INFO     | did not find any defunct processes belonging to 838317
[2026-04-18 14:28:38] 2026-04-18 12:28:26,345 | INFO     | did not find any defunct processes belonging to 838317
[2026-04-18 14:28:38] 2026-04-18 12:28:26,345 | INFO     | Ready for new job
[2026-04-18 14:28:38] 2026-04-18 12:28:26,346 | INFO     | **************************************
[2026-04-18 14:28:38] 2026-04-18 12:28:26,346 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 14:28:38] 2026-04-18 12:28:26,346 | INFO     | **************************************
[2026-04-18 14:28:38] 2026-04-18 12:28:26,346 | INFO     | 
[2026-04-18 14:28:38] 2026-04-18 12:28:26,347 | INFO     | architecture information:
[2026-04-18 14:28:38] 2026-04-18 12:28:26,347 | INFO     | executing command: cat /etc/os-release
[2026-04-18 14:28:38] 2026-04-18 12:28:26,361 | INFO     | cat /etc/os-release:
[2026-04-18 14:28:38] NAME="CentOS Linux"
[2026-04-18 14:28:38] VERSION="7 (Core)"
[2026-04-18 14:28:38] ID="centos"
[2026-04-18 14:28:38] ID_LIKE="rhel fedora"
[2026-04-18 14:28:38] VERSION_ID="7"
[2026-04-18 14:28:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 14:28:38] ANSI_COLOR="0;31"
[2026-04-18 14:28:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 14:28:38] HOME_URL="https://www.centos.org/"
[2026-04-18 14:28:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 14:28:38] 
[2026-04-18 14:28:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 14:28:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 14:28:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 14:28:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 14:28:38] 
[2026-04-18 14:28:38] 2026-04-18 12:28:26,361 | INFO     | **************************************
[2026-04-18 14:28:38] 2026-04-18 12:28:26,865 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | INFO     | sufficient remaining disk space (325679316992 B)
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | INFO     | update_server=False
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 14:28:38] 2026-04-18 12:28:26,883 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-18 14:28:38] 2026-04-18 12:28:26,884 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 14:28:38] 2026-04-18 12:28:26,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 14:28:38] 2026-04-18 12:28:26,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 14:28:38] 2026-04-18 12:28:26,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 14:28:38] 2026-04-18 12:28:27,244 | INFO     | all payload control threads have been joined
[2026-04-18 14:28:38] 2026-04-18 12:28:27,796 | INFO     | all data control threads have been joined
[2026-04-18 14:28:38] 2026-04-18 12:28:27,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 14:28:38] 2026-04-18 12:28:27,842 | INFO     | aborting loop
[2026-04-18 14:28:38] 2026-04-18 12:28:27,889 | INFO     | [job] queue monitor thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:27,889 | INFO     | [job] retrieve thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:27,906 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:27,956 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,070 | INFO     | all job control threads have been joined
[2026-04-18 14:28:38] 2026-04-18 12:28:28,102 | INFO     | [data] copytool_in thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,154 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,250 | INFO     | [payload] control thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,311 | INFO     | [payload] validate_post thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 14:28:38] 2026-04-18 12:28:28,568 | INFO     | [payload] failed_post thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,801 | INFO     | [data] control thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,848 | INFO     | [job] job monitor thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:28,890 | INFO     | [data] copytool_out thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:29,076 | INFO     | [job] control thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:29,306 | INFO     | [job] validate thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:29,378 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:29,742 | INFO     | [monitor] cgroup control has ended
[2026-04-18 14:28:38] 2026-04-18 12:28:32,479 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 14:28:38] 2026-04-18 12:28:33,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542262474560)>', '<ExcThread(monitor, started 140541253641984)>']
[2026-04-18 14:28:38] 2026-04-18 12:28:33,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 14:28:38] 2026-04-18 12:28:33,921 | INFO     | [monitor] control thread has ended
[2026-04-18 14:28:38] 2026-04-18 12:28:38,796 | INFO     | all workflow threads have been joined
[2026-04-18 14:28:38] 2026-04-18 12:28:38,796 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 14:28:38] 2026-04-18 12:28:38,796 | INFO     | traces error code: 0
[2026-04-18 14:28:38] 2026-04-18 12:28:38,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 14:28:38] 2026-04-18 12:28:38,876 [wrapper] ==== pilot stdout END ====
[2026-04-18 14:28:38] 2026-04-18 12:28:38,880 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 14:28:38] 2026-04-18 12:28:38,884 [wrapper] pilotpid: 833786
[2026-04-18 14:28:38] 2026-04-18 12:28:38,888 [wrapper] Pilot exit status: 0
[2026-04-18 14:28:38] 2026-04-18 12:28:38,900 [wrapper] pandaids: 7096683267
[2026-04-18 14:28:38] 2026-04-18 12:28:38,921 [wrapper] cleanup supervisor_pilot  843465 833787
[2026-04-18 14:28:38] 2026-04-18 12:28:38,925 [wrapper] Test setup, not cleaning
[2026-04-18 14:28:38] 2026-04-18 12:28:38,929 [wrapper] apfmon messages muted
[2026-04-18 14:28:38] 2026-04-18 12:28:38,933 [wrapper] ==== wrapper stdout END ====
[2026-04-18 14:28:38] 2026-04-18 12:28:38,937 [wrapper] ==== wrapper stderr END ====
[2026-04-18 14:28:38]  *** Error codes and diagnostics ***
[2026-04-18 14:28:38]     "exeErrorCode": 0,
[2026-04-18 14:28:38]     "pilotErrorCode": 0,
[2026-04-18 14:28:38]  *** Listing of results directory ***
[2026-04-18 14:28:38] total 454212
[2026-04-18 14:28:38] -rwx------ 1 boinc boinc     36322 Apr 18 08:25 runpilot2-wrapper.sh
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc    644190 Apr 18 08:34 pilot3.tar.gz
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc      5094 Apr 18 08:42 queuedata.json
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc       100 Apr 18 13:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 14:28:38] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 13:17 run_atlas
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc       105 Apr 18 13:17 job.xml
[2026-04-18 14:28:38] -rw-r--r-- 2 boinc boinc 279249228 Apr 18 13:17 EVNT.49539591._000131.pool.root.1
[2026-04-18 14:28:38] -rw-r--r-- 2 boinc boinc    656946 Apr 18 13:17 input.tar.gz
[2026-04-18 14:28:38] -rw-r--r-- 2 boinc boinc     15665 Apr 18 13:17 start_atlas.sh
[2026-04-18 14:28:38] drwxrwx--x 2 boinc boinc      4096 Apr 18 13:17 shared
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc         0 Apr 18 13:17 boinc_setup_complete
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc      6293 Apr 18 13:17 init_data.xml
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc         0 Apr 18 13:17 boinc_lockfile
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc      2603 Apr 18 13:17 pandaJob.out
[2026-04-18 14:28:38] -rw------- 1 boinc boinc    997957 Apr 18 13:17 agis_schedconf.cvmfs.json
[2026-04-18 14:28:38] -rw------- 1 boinc boinc   1512404 Apr 18 13:17 agis_ddmendpoints.agis.ALL.json
[2026-04-18 14:28:38] -rw------- 1 boinc boinc       428 Apr 18 13:17 workernode_map.json
[2026-04-18 14:28:38] drwx------ 5 boinc boinc      4096 Apr 18 13:17 pilot3
[2026-04-18 14:28:38] -rw------- 1 boinc boinc        95 Apr 18 14:27 pilot_heartbeat.json
[2026-04-18 14:28:38] -rw------- 1 boinc boinc 180478565 Apr 18 14:28 HITS.49545114._021604.pool.root.1
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc       487 Apr 18 14:28 boinc_task_state.xml
[2026-04-18 14:28:38] -rw------- 1 boinc boinc      1019 Apr 18 14:28 memory_monitor_summary.json
[2026-04-18 14:28:38] -rw------- 1 boinc boinc    241595 Apr 18 14:28 log.49545114._021604.job.log.tgz.1
[2026-04-18 14:28:38] -rw------- 1 boinc boinc      6323 Apr 18 14:28 heartbeat_new.json
[2026-04-18 14:28:38] -rw------- 1 boinc boinc      6214 Apr 18 14:28 heartbeat.json
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc      8192 Apr 18 14:28 boinc_mmap_file
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc        27 Apr 18 14:28 wrapper_checkpoint.txt
[2026-04-18 14:28:38] -rw------- 1 boinc boinc      4551 Apr 18 14:28 pilotlog.txt
[2026-04-18 14:28:38] -rw------- 1 boinc boinc    424594 Apr 18 14:28 log.49545114._021604.job.log.1
[2026-04-18 14:28:38] -rw------- 1 boinc boinc       357 Apr 18 14:28 output.list
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc       410 Apr 18 14:28 runtime_log
[2026-04-18 14:28:38] -rw------- 1 boinc boinc    686080 Apr 18 14:28 result.tar.gz
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc      8523 Apr 18 14:28 runtime_log.err
[2026-04-18 14:28:38] -rw------- 1 boinc boinc       658 Apr 18 14:28 23e82d1321d3.diag
[2026-04-18 14:28:38] -rw-r--r-- 1 boinc boinc     11936 Apr 18 14:28 stderr.txt
[2026-04-18 14:28:39] HITS file was successfully produced:
[2026-04-18 14:28:39] -rw------- 1 boinc boinc 180478565 Apr 18 14:28 shared/HITS.pool.root.1
[2026-04-18 14:28:39]  *** Contents of shared directory: ***
[2026-04-18 14:28:39] total 450300
[2026-04-18 14:28:39] -rw-r--r-- 2 boinc boinc 279249228 Apr 18 13:17 ATLAS.root_0
[2026-04-18 14:28:39] -rw-r--r-- 2 boinc boinc    656946 Apr 18 13:17 input.tar.gz
[2026-04-18 14:28:39] -rw-r--r-- 2 boinc boinc     15665 Apr 18 13:17 start_atlas.sh
[2026-04-18 14:28:39] -rw------- 1 boinc boinc 180478565 Apr 18 14:28 HITS.pool.root.1
[2026-04-18 14:28:39] -rw------- 1 boinc boinc    686080 Apr 18 14:28 result.tar.gz
14:28:40 (829680): run_atlas exited; CPU time 15549.072897
14:28:40 (829680): called boinc_finish(0)

</stderr_txt>
]]>

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