Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:56 (200685): wrapper (7.7.26015): starting
09:12:56 (200685): wrapper: running run_atlas (--nthreads 4)
[2026-04-18 09:12:56] Arguments: --nthreads 4
[2026-04-18 09:12:56] Threads: 4
[2026-04-18 09:12:56] Checking for CVMFS
[2026-04-18 09:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 09:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 09:12:58] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 09:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 09:12:58] 2.9.2.0 200880 0 29592 158576 4 1 35460284 36864001 0 130560 0 0 0.000 1282 1332 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-18 09:12:58] CVMFS is ok
[2026-04-18 09:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 09:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 09:12:58] Further information can be found at the LHC@home message board.
[2026-04-18 09:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 09:12:58] Checking for apptainer binary...
[2026-04-18 09:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 09:12:58] Running /usr/bin/apptainer --version
[2026-04-18 09:12:58] apptainer version 1.4.1-1.1
[2026-04-18 09:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 09:12:58] atlasA139
[2026-04-18 09:12:58] apptainer works
[2026-04-18 09:12:58] Set ATHENA_PROC_NUMBER=4
[2026-04-18 09:12:58] Set ATHENA_CORE_NUMBER=4
[2026-04-18 09:12:58] Starting ATLAS job with PandaID=7096310371
[2026-04-18 09:12:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 10:22:22]  *** The last 200 lines of the pilot log: ***
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | job 7096310371 has completed (purged errors)
[2026-04-18 10:22:22] 2026-04-18 08:21:19,373 | INFO     | overall cleanup function is called
[2026-04-18 10:22:22] 2026-04-18 08:21:20,380 | INFO     | --- collectZombieJob: --- 10, [209538]
[2026-04-18 10:22:22] 2026-04-18 08:21:20,380 | INFO     | zombie collector waiting for pid 209538
[2026-04-18 10:22:22] 2026-04-18 08:21:20,380 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 10:22:22] 2026-04-18 08:21:20,380 | INFO     | collected zombie processes
[2026-04-18 10:22:22] 2026-04-18 08:21:20,380 | INFO     | will attempt to kill all subprocesses of pid=209538
[2026-04-18 10:22:22] 2026-04-18 08:21:20,424 | INFO     | process IDs to be killed: [209538] (in reverse order)
[2026-04-18 10:22:22] 2026-04-18 08:21:20,454 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 10:22:22] 2026-04-18 08:21:20,454 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 10:22:22] 2026-04-18 08:21:20,456 | INFO     | did not find any defunct processes belonging to 209538
[2026-04-18 10:22:22] 2026-04-18 08:21:20,457 | INFO     | did not find any defunct processes belonging to 209538
[2026-04-18 10:22:22] 2026-04-18 08:21:20,457 | INFO     | Ready for new job
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | **************************************
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | **************************************
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | 
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | architecture information:
[2026-04-18 10:22:22] 2026-04-18 08:21:20,458 | INFO     | executing command: cat /etc/os-release
[2026-04-18 10:22:22] 2026-04-18 08:21:20,471 | INFO     | cat /etc/os-release:
[2026-04-18 10:22:22] NAME="CentOS Linux"
[2026-04-18 10:22:22] VERSION="7 (Core)"
[2026-04-18 10:22:22] ID="centos"
[2026-04-18 10:22:22] ID_LIKE="rhel fedora"
[2026-04-18 10:22:22] VERSION_ID="7"
[2026-04-18 10:22:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 10:22:22] ANSI_COLOR="0;31"
[2026-04-18 10:22:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 10:22:22] HOME_URL="https://www.centos.org/"
[2026-04-18 10:22:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 10:22:22] 
[2026-04-18 10:22:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 10:22:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 10:22:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 10:22:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 10:22:22] 
[2026-04-18 10:22:22] 2026-04-18 08:21:20,471 | INFO     | **************************************
[2026-04-18 10:22:22] 2026-04-18 08:21:20,974 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | INFO     | sufficient remaining disk space (324993548288 B)
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | INFO     | update_server=False
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 10:22:22] 2026-04-18 08:21:20,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 10:22:22] 2026-04-18 08:21:20,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 10:22:22] 2026-04-18 08:21:20,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 10:22:22] 2026-04-18 08:21:20,992 | INFO     | aborting loop
[2026-04-18 10:22:22] 2026-04-18 08:21:21,386 | INFO     | all data control threads have been joined
[2026-04-18 10:22:22] 2026-04-18 08:21:21,468 | INFO     | all payload control threads have been joined
[2026-04-18 10:22:22] 2026-04-18 08:21:21,648 | INFO     | all job control threads have been joined
[2026-04-18 10:22:22] 2026-04-18 08:21:21,997 | INFO     | [job] queue monitor thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:21,997 | INFO     | [job] retrieve thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:21,998 | INFO     | [job] job monitor thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,312 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,392 | INFO     | [data] control thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,474 | INFO     | [payload] control thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,654 | INFO     | [job] control thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,852 | INFO     | [payload] validate_post thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,857 | INFO     | [job] validate thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,998 | INFO     | [data] copytool_out thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:22,999 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:23,085 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:23,235 | INFO     | [data] copytool_in thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:23,391 | INFO     | [payload] failed_post thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:23,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 10:22:22] 2026-04-18 08:21:27,824 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:32,035 | INFO     | job.realtimelogging is not enabled
[2026-04-18 10:22:22] 2026-04-18 08:21:33,041 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 10:22:22] 2026-04-18 08:21:51,669 | INFO     | PID=205038 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-18 10:22:22] 2026-04-18 08:21:51,669 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 10:22:22] 2026-04-18 08:21:51,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 10:22:22] 2026-04-18 08:21:51,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 10:22:22] 2026-04-18 08:22:16,112 | INFO     | [monitor] cgroup control has ended
[2026-04-18 10:22:22] 2026-04-18 08:22:17,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702938060608)>', '<ExcThread(monitor, started 140701769651968)>']
[2026-04-18 10:22:22] 2026-04-18 08:22:17,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 10:22:22] 2026-04-18 08:22:17,802 | INFO     | [monitor] control thread has ended
[2026-04-18 10:22:22] 2026-04-18 08:22:22,788 | INFO     | all workflow threads have been joined
[2026-04-18 10:22:22] 2026-04-18 08:22:22,788 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 10:22:22] 2026-04-18 08:22:22,788 | INFO     | traces error code: 0
[2026-04-18 10:22:22] 2026-04-18 08:22:22,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 10:22:22] 2026-04-18 08:22:22,858 [wrapper] ==== pilot stdout END ====
[2026-04-18 10:22:22] 2026-04-18 08:22:22,861 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 10:22:22] 2026-04-18 08:22:22,865 [wrapper] pilotpid: 205038
[2026-04-18 10:22:22] 2026-04-18 08:22:22,869 [wrapper] Pilot exit status: 0
[2026-04-18 10:22:22] 2026-04-18 08:22:22,878 [wrapper] pandaids: 7096310371
[2026-04-18 10:22:22] 2026-04-18 08:22:22,899 [wrapper] cleanup supervisor_pilot  214652 205039
[2026-04-18 10:22:22] 2026-04-18 08:22:22,903 [wrapper] Test setup, not cleaning
[2026-04-18 10:22:22] 2026-04-18 08:22:22,906 [wrapper] apfmon messages muted
[2026-04-18 10:22:22] 2026-04-18 08:22:22,909 [wrapper] ==== wrapper stdout END ====
[2026-04-18 10:22:22] 2026-04-18 08:22:22,913 [wrapper] ==== wrapper stderr END ====
[2026-04-18 10:22:22]  *** Error codes and diagnostics ***
[2026-04-18 10:22:22]     "exeErrorCode": 0,
[2026-04-18 10:22:22]     "pilotErrorCode": 0,
[2026-04-18 10:22:22]  *** Listing of results directory ***
[2026-04-18 10:22:22] total 460456
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc    644190 Apr 18 07:07 pilot3.tar.gz
[2026-04-18 10:22:22] -rwx------ 1 boinc boinc     36322 Apr 18 07:08 runpilot2-wrapper.sh
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc      5094 Apr 18 07:24 queuedata.json
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc       100 Apr 18 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 10:22:22] -rwxr-xr-x 1 boinc boinc      7986 Apr 18 09:12 run_atlas
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc       105 Apr 18 09:12 job.xml
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc 281758750 Apr 18 09:12 EVNT.49539591._000062.pool.root.1
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc    656938 Apr 18 09:12 input.tar.gz
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc     15665 Apr 18 09:12 start_atlas.sh
[2026-04-18 10:22:22] drwxrwx--x 2 boinc boinc      4096 Apr 18 09:12 shared
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc         0 Apr 18 09:12 boinc_setup_complete
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc      6288 Apr 18 09:12 init_data.xml
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc         0 Apr 18 09:12 boinc_lockfile
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc      2602 Apr 18 09:12 pandaJob.out
[2026-04-18 10:22:22] -rw------- 1 boinc boinc    997893 Apr 18 09:13 agis_schedconf.cvmfs.json
[2026-04-18 10:22:22] -rw------- 1 boinc boinc   1512404 Apr 18 09:13 agis_ddmendpoints.agis.ALL.json
[2026-04-18 10:22:22] -rw------- 1 boinc boinc       430 Apr 18 09:13 workernode_map.json
[2026-04-18 10:22:22] drwx------ 5 boinc boinc      4096 Apr 18 09:13 pilot3
[2026-04-18 10:22:22] -rw------- 1 boinc boinc 184424350 Apr 18 10:20 HITS.49545114._018792.pool.root.1
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc       487 Apr 18 10:21 boinc_task_state.xml
[2026-04-18 10:22:22] -rw------- 1 boinc boinc      1017 Apr 18 10:21 memory_monitor_summary.json
[2026-04-18 10:22:22] -rw------- 1 boinc boinc    229836 Apr 18 10:21 log.49545114._018792.job.log.tgz.1
[2026-04-18 10:22:22] -rw------- 1 boinc boinc      6327 Apr 18 10:21 heartbeat_new.json
[2026-04-18 10:22:22] -rw------- 1 boinc boinc      6218 Apr 18 10:21 heartbeat.json
[2026-04-18 10:22:22] -rw------- 1 boinc boinc        95 Apr 18 10:21 pilot_heartbeat.json
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc      8192 Apr 18 10:22 boinc_mmap_file
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc        27 Apr 18 10:22 wrapper_checkpoint.txt
[2026-04-18 10:22:22] -rw------- 1 boinc boinc      4818 Apr 18 10:22 pilotlog.txt
[2026-04-18 10:22:22] -rw------- 1 boinc boinc    408620 Apr 18 10:22 log.49545114._018792.job.log.1
[2026-04-18 10:22:22] -rw------- 1 boinc boinc       357 Apr 18 10:22 output.list
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc       410 Apr 18 10:22 runtime_log
[2026-04-18 10:22:22] -rw------- 1 boinc boinc    655360 Apr 18 10:22 result.tar.gz
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc      8533 Apr 18 10:22 runtime_log.err
[2026-04-18 10:22:22] -rw------- 1 boinc boinc       660 Apr 18 10:22 11d0e9c5b946.diag
[2026-04-18 10:22:22] -rw-r--r-- 1 boinc boinc     11681 Apr 18 10:22 stderr.txt
[2026-04-18 10:22:22] HITS file was successfully produced:
[2026-04-18 10:22:22] -rw------- 1 boinc boinc 184424350 Apr 18 10:20 shared/HITS.pool.root.1
[2026-04-18 10:22:22]  *** Contents of shared directory: ***
[2026-04-18 10:22:22] total 456568
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc 281758750 Apr 18 09:12 ATLAS.root_0
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc    656938 Apr 18 09:12 input.tar.gz
[2026-04-18 10:22:22] -rw-r--r-- 2 boinc boinc     15665 Apr 18 09:12 start_atlas.sh
[2026-04-18 10:22:22] -rw------- 1 boinc boinc 184424350 Apr 18 10:20 HITS.pool.root.1
[2026-04-18 10:22:22] -rw------- 1 boinc boinc    655360 Apr 18 10:22 result.tar.gz
10:22:24 (200685): run_atlas exited; CPU time 14948.665518
10:22:24 (200685): called boinc_finish(0)

</stderr_txt>
]]>

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