Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:41:52 (19829): wrapper (7.7.26015): starting
07:41:52 (19829): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 07:41:52] Arguments: --nthreads 8
[2026-04-18 07:41:52] Threads: 8
[2026-04-18 07:41:52] Checking for CVMFS
[2026-04-18 07:41:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 07:41:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 07:41:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 07:41:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 07:41:55] 2.11.2.0 10764 3638 81732 158573 3 11 15744056 25165825 1060 130560 0 348575 99.307 3660893 20883 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 07:41:55] CVMFS is ok
[2026-04-18 07:41:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 07:41:55] Checking for apptainer binary...
[2026-04-18 07:41:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 07:41:55] Running /usr/bin/apptainer --version
[2026-04-18 07:41:55] apptainer version 1.3.2-1.el7
[2026-04-18 07:41:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 07:42:17] cg-vwn396.simple-grid.lan
[2026-04-18 07:42:17] apptainer works
[2026-04-18 07:42:18] Set ATHENA_PROC_NUMBER=8
[2026-04-18 07:42:18] Set ATHENA_CORE_NUMBER=8
[2026-04-18 07:42:18] Starting ATLAS job with PandaID=7096308728
[2026-04-18 07:42:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 12:11:54]  *** The last 200 lines of the pilot log: ***
[2026-04-18 12:11:54] 2026-04-18 10:10:52,442 | INFO     | job 7096308728 has finished - writing final server update
[2026-04-18 12:11:54] 2026-04-18 10:10:52,442 | INFO     | total number of processed events: 400 (read)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,444 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7096308728/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,445 | INFO     | extracted standard info from prmon json
[2026-04-18 12:11:54] 2026-04-18 10:10:52,445 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 12:11:54] 2026-04-18 10:10:52,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 12:11:54] 2026-04-18 10:10:52,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 12:11:54] 2026-04-18 10:10:52,451 | INFO     | fitting pss+swap vs Time
[2026-04-18 12:11:54] 2026-04-18 10:10:52,452 | INFO     | sum of square deviations: 4903347750.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,454 | INFO     | sum of deviations: 127054867724.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,455 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,455 | INFO     | mean y: 2446434.115537849
[2026-04-18 12:11:54] 2026-04-18 10:10:52,455 | INFO     | intersect: 2446434.115537849
[2026-04-18 12:11:54] 2026-04-18 10:10:52,456 | INFO     | chi2: 7.0939110904491205
[2026-04-18 12:11:54] 2026-04-18 10:10:52,456 | INFO     | sum of square deviations: 4616114457.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,458 | INFO     | sum of deviations: 141101710952.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,459 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,459 | INFO     | mean y: 2453747.0284552844
[2026-04-18 12:11:54] 2026-04-18 10:10:52,459 | INFO     | intersect: 2453747.0284552844
[2026-04-18 12:11:54] 2026-04-18 10:10:52,459 | INFO     | chi2: 6.364467407728597
[2026-04-18 12:11:54] 2026-04-18 10:10:52,459 | INFO     | current chi2=6.364467407728597 (change=10.28267303353448 %)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,460 | INFO     | right removable region: 245
[2026-04-18 12:11:54] 2026-04-18 10:10:52,460 | INFO     | sum of square deviations: 4616114457.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,462 | INFO     | sum of deviations: 39379023756.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,462 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,463 | INFO     | mean y: 2492950.87398374
[2026-04-18 12:11:54] 2026-04-18 10:10:52,463 | INFO     | intersect: 2492950.87398374
[2026-04-18 12:11:54] 2026-04-18 10:10:52,463 | INFO     | chi2: 2.267787372709849
[2026-04-18 12:11:54] 2026-04-18 10:10:52,463 | INFO     | current chi2=2.267787372709849 (change=68.03191717805596 %)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,464 | INFO     | sum of square deviations: 4340323240.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,466 | INFO     | sum of deviations: -5059547094.999981
[2026-04-18 12:11:54] 2026-04-18 10:10:52,466 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,466 | INFO     | mean y: 2517383.22406639
[2026-04-18 12:11:54] 2026-04-18 10:10:52,466 | INFO     | intersect: 2517383.22406639
[2026-04-18 12:11:54] 2026-04-18 10:10:52,467 | INFO     | chi2: 0.822621328179432
[2026-04-18 12:11:54] 2026-04-18 10:10:52,467 | INFO     | current chi2=0.822621328179432 (change=63.7258175930111 %)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,468 | INFO     | sum of square deviations: 4075741535.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,470 | INFO     | sum of deviations: -4973737785.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,470 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,470 | INFO     | mean y: 2517315.2711864407
[2026-04-18 12:11:54] 2026-04-18 10:10:52,470 | INFO     | intersect: 2517315.2711864407
[2026-04-18 12:11:54] 2026-04-18 10:10:52,471 | INFO     | chi2: 0.8032996300328108
[2026-04-18 12:11:54] 2026-04-18 10:10:52,471 | INFO     | current chi2=0.8032996300328108 (change=2.348796157447394 %)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,471 | INFO     | left removable region: 15
[2026-04-18 12:11:54] 2026-04-18 10:10:52,472 | INFO     | sum of square deviations: 3772712597.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,474 | INFO     | sum of deviations: 10730041550.5
[2026-04-18 12:11:54] 2026-04-18 10:10:52,474 | INFO     | mean x (centered): 0.0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,474 | INFO     | mean y: 2526593.4304347825
[2026-04-18 12:11:54] 2026-04-18 10:10:52,474 | INFO     | intersect: 2526593.4304347825
[2026-04-18 12:11:54] 2026-04-18 10:10:52,475 | INFO     | chi2: 0.002850315145940517
[2026-04-18 12:11:54] 2026-04-18 10:10:52,475 | INFO     | current memory leak: 2.84 B/s (using 230 data points, chi2=0.00)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | ..............................
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | . Timing measurements:
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | . get job = 0 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | . initial setup = 106 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | . payload setup = 305 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,476 | INFO     | . stage-in = 0 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,477 | INFO     | . payload execution = 15426 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,477 | INFO     | . stage-out = 3 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,477 | INFO     | . log creation = 1 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,477 | INFO     | ..............................
[2026-04-18 12:11:54] 2026-04-18 10:10:52,645 | INFO     | 
[2026-04-18 12:11:54] 2026-04-18 10:10:52,645 | INFO     | job summary report
[2026-04-18 12:11:54] 2026-04-18 10:10:52,645 | INFO     | --------------------------------------------------
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | PanDA job id: 7096308728
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | task id: 49545114
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | errors: (none)
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | pilot state: finished 
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | transexitcode: 0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | exeerrorcode: 0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | exeerrordiag: 
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | exitcode: 0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,646 | INFO     | exitmsg: OK
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | cpuconsumptiontime: 58731 s
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | nevents: 400
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | neventsw: 0
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | pid: 28237
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | pgrp: 28237
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | corecount: 8
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | event service: False
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | sizes: {0: 2281567, 1: 2270619, 2: 2283480, 13: 2283480, 15736: 2314651, 15740: 2323649, 15741: 2323833, 15742: 2324027}
[2026-04-18 12:11:54] 2026-04-18 10:10:52,647 | INFO     | --------------------------------------------------
[2026-04-18 12:11:54] 2026-04-18 10:10:52,648 | INFO     | 
[2026-04-18 12:11:54] 2026-04-18 10:10:52,648 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-04-18 12:11:54] 2026-04-18 10:10:53,136 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | job 7096308728 has completed (purged errors)
[2026-04-18 12:11:54] 2026-04-18 10:10:53,139 | INFO     | overall cleanup function is called
[2026-04-18 12:11:54] 2026-04-18 10:10:54,148 | INFO     | --- collectZombieJob: --- 10, [28237]
[2026-04-18 12:11:54] 2026-04-18 10:10:54,148 | INFO     | zombie collector waiting for pid 28237
[2026-04-18 12:11:54] 2026-04-18 10:10:54,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 12:11:54] 2026-04-18 10:10:54,148 | INFO     | collected zombie processes
[2026-04-18 12:11:54] 2026-04-18 10:10:54,149 | INFO     | will attempt to kill all subprocesses of pid=28237
[2026-04-18 12:11:54] 2026-04-18 10:10:54,254 | INFO     | process IDs to be killed: [28237] (in reverse order)
[2026-04-18 12:11:54] 2026-04-18 10:10:55,282 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 12:11:54] 2026-04-18 10:10:55,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 12:11:54] 2026-04-18 10:10:55,285 | INFO     | did not find any defunct processes belonging to 28237
[2026-04-18 12:11:54] 2026-04-18 10:10:55,287 | INFO     | did not find any defunct processes belonging to 28237
[2026-04-18 12:11:54] 2026-04-18 10:10:55,287 | INFO     | Ready for new job
[2026-04-18 12:11:54] 2026-04-18 10:10:55,289 | INFO     | **************************************
[2026-04-18 12:11:54] 2026-04-18 10:10:55,289 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 12:11:54] 2026-04-18 10:10:55,289 | INFO     | **************************************
[2026-04-18 12:11:54] 2026-04-18 10:10:55,289 | INFO     | 
[2026-04-18 12:11:54] 2026-04-18 10:10:55,290 | INFO     | pilot is running in a VM
[2026-04-18 12:11:54] 2026-04-18 10:10:55,290 | INFO     | architecture information:
[2026-04-18 12:11:54] 2026-04-18 10:10:55,299 | INFO     | executing command: cat /etc/os-release
[2026-04-18 12:11:54] 2026-04-18 10:10:55,525 | INFO     | cat /etc/os-release:
[2026-04-18 12:11:54] NAME="CentOS Linux"
[2026-04-18 12:11:54] VERSION="7 (Core)"
[2026-04-18 12:11:54] ID="centos"
[2026-04-18 12:11:54] ID_LIKE="rhel fedora"
[2026-04-18 12:11:54] VERSION_ID="7"
[2026-04-18 12:11:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 12:11:54] ANSI_COLOR="0;31"
[2026-04-18 12:11:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 12:11:54] HOME_URL="https://www.centos.org/"
[2026-04-18 12:11:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 12:11:54] 
[2026-04-18 12:11:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 12:11:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 12:11:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 12:11:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 12:11:54] 
[2026-04-18 12:11:54] 2026-04-18 10:10:55,525 | INFO     | **************************************
[2026-04-18 12:11:54] 2026-04-18 10:10:56,028 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-18 12:11:54] 2026-04-18 10:10:56,269 | INFO     | sufficient remaining disk space (495887319040 B)
[2026-04-18 12:11:54] 2026-04-18 10:10:56,270 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 12:11:54] 2026-04-18 10:10:56,270 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 12:11:54] 2026-04-18 10:10:56,270 | INFO     | update_server=False
[2026-04-18 12:11:54] 2026-04-18 10:10:56,270 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 12:11:54] 2026-04-18 10:10:56,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 12:11:54] 2026-04-18 10:10:56,294 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-18 12:11:54] 2026-04-18 10:10:56,294 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-18 12:11:54] 2026-04-18 10:10:56,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 12:11:54] 2026-04-18 10:10:56,294 | INFO     | will abort loop
[2026-04-18 12:11:54] 2026-04-18 10:10:57,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 12:11:54] 2026-04-18 10:10:57,276 | INFO     | [job] retrieve thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:57,287 | INFO     | all data control threads have been joined
[2026-04-18 12:11:54] 2026-04-18 10:10:57,300 | INFO     | [job] job monitor thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:57,361 | INFO     | all job control threads have been joined
[2026-04-18 12:11:54] 2026-04-18 10:10:57,509 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:57,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 12:11:54] 2026-04-18 10:10:57,767 | INFO     | all payload control threads have been joined
[2026-04-18 12:11:54] 2026-04-18 10:10:57,847 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,172 | INFO     | [job] validate thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,278 | INFO     | [data] copytool_out thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,293 | INFO     | [data] control thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,318 | INFO     | [payload] failed_post thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,367 | INFO     | [job] control thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,452 | INFO     | [data] copytool_in thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,625 | INFO     | [payload] validate_post thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,666 | INFO     | [job] queue monitor thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,748 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:10:58,773 | INFO     | [payload] control thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:11:01,135 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:11:06,905 | INFO     | job.realtimelogging is not enabled
[2026-04-18 12:11:54] 2026-04-18 10:11:07,911 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 12:11:54] 2026-04-18 10:11:25,669 | INFO     | PID=23793 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-18 12:11:54] 2026-04-18 10:11:25,669 | INFO     | .. there are 2 such processes running
[2026-04-18 12:11:54] 2026-04-18 10:11:25,670 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 12:11:54] 2026-04-18 10:11:25,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 12:11:54] 2026-04-18 10:11:25,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 12:11:54] 2026-04-18 10:11:42,840 | INFO     | [monitor] cgroup control has ended
[2026-04-18 12:11:54] 2026-04-18 10:11:42,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140266245248832)>', '<ExcThread(monitor, started 140265822078720)>']
[2026-04-18 12:11:54] 2026-04-18 10:11:43,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 12:11:54] 2026-04-18 10:11:43,778 | INFO     | [monitor] control thread has ended
[2026-04-18 12:11:54] 2026-04-18 10:11:47,956 | INFO     | all workflow threads have been joined
[2026-04-18 12:11:54] 2026-04-18 10:11:47,956 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 12:11:54] 2026-04-18 10:11:47,956 | INFO     | traces error code: 0
[2026-04-18 12:11:54] 2026-04-18 10:11:47,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 12:11:54] 2026-04-18 10:11:48,468 [wrapper] ==== pilot stdout END ====
[2026-04-18 12:11:54] 2026-04-18 10:11:48,558 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 12:11:54] 2026-04-18 10:11:48,622 [wrapper] pilotpid: 23793
[2026-04-18 12:11:54] 2026-04-18 10:11:48,685 [wrapper] Pilot exit status: 0
[2026-04-18 12:11:54] 2026-04-18 10:11:48,942 [wrapper] pandaids: 7096308728
[2026-04-18 12:11:54] 2026-04-18 10:11:50,171 [wrapper] cleanup supervisor_pilot  1743 23794
[2026-04-18 12:11:54] 2026-04-18 10:11:50,238 [wrapper] Test setup, not cleaning
[2026-04-18 12:11:54] 2026-04-18 10:11:50,305 [wrapper] apfmon messages muted
[2026-04-18 12:11:54] 2026-04-18 10:11:50,375 [wrapper] ==== wrapper stdout END ====
[2026-04-18 12:11:54] 2026-04-18 10:11:50,443 [wrapper] ==== wrapper stderr END ====
[2026-04-18 12:11:54]  *** Error codes and diagnostics ***
[2026-04-18 12:11:54]     "exeErrorCode": 0,
[2026-04-18 12:11:54]     "pilotErrorCode": 0,
[2026-04-18 12:11:54]  *** Listing of results directory ***
[2026-04-18 12:11:54] total 463676
[2026-04-18 12:11:54] -rwx------. 1 boinc boinc     36322 Apr 18 07:07 runpilot2-wrapper.sh
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc    644190 Apr 18 07:07 pilot3.tar.gz
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc      5094 Apr 18 07:24 queuedata.json
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc       100 Apr 18 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 12:11:54] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 07:41 run_atlas
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc       105 Apr 18 07:41 job.xml
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc      6308 Apr 18 07:41 init_data.xml
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc 278641208 Apr 18 07:41 EVNT.49539591._000045.pool.root.1
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc     15665 Apr 18 07:41 start_atlas.sh
[2026-04-18 12:11:54] drwxrwx--x. 2 boinc boinc        68 Apr 18 07:41 shared
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc    656937 Apr 18 07:41 input.tar.gz
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc         0 Apr 18 07:41 boinc_lockfile
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc      2602 Apr 18 07:42 pandaJob.out
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc       415 Apr 18 07:48 workernode_map.json
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc    997901 Apr 18 07:48 agis_schedconf.cvmfs.json
[2026-04-18 12:11:54] drwx------. 5 boinc boinc      4096 Apr 18 07:48 pilot3
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc 188393057 Apr 18 12:09 HITS.49545114._018390.pool.root.1
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc       489 Apr 18 12:09 boinc_task_state.xml
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc        95 Apr 18 12:10 pilot_heartbeat.json
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc      1011 Apr 18 12:10 memory_monitor_summary.json
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc   1512404 Apr 18 12:10 agis_ddmendpoints.agis.ALL.json
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc    409198 Apr 18 12:10 log.49545114._018390.job.log.tgz.1
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc      6327 Apr 18 12:10 heartbeat_new.json
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc      6218 Apr 18 12:10 heartbeat.json
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc        28 Apr 18 12:11 wrapper_checkpoint.txt
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc      8192 Apr 18 12:11 boinc_mmap_file
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc      5137 Apr 18 12:11 pilotlog.txt
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc   1453158 Apr 18 12:11 log.49545114._018390.job.log.1
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc       357 Apr 18 12:11 output.list
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc       410 Apr 18 12:11 runtime_log
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc   1884160 Apr 18 12:11 result.tar.gz
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc      8438 Apr 18 12:11 runtime_log.err
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc       656 Apr 18 12:11 11923b45a7db.diag
[2026-04-18 12:11:54] -rw-r--r--. 1 boinc boinc     20602 Apr 18 12:11 stderr.txt
[2026-04-18 12:11:54] HITS file was successfully produced:
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc 188393057 Apr 18 12:09 shared/HITS.pool.root.1
[2026-04-18 12:11:54]  *** Contents of shared directory: ***
[2026-04-18 12:11:54] total 458592
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc 278641208 Apr 18 07:41 ATLAS.root_0
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc     15665 Apr 18 07:41 start_atlas.sh
[2026-04-18 12:11:54] -rw-r--r--. 2 boinc boinc    656937 Apr 18 07:41 input.tar.gz
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc 188393057 Apr 18 12:09 HITS.pool.root.1
[2026-04-18 12:11:54] -rw-------. 1 boinc boinc   1884160 Apr 18 12:11 result.tar.gz
12:11:55 (19829): run_atlas exited; CPU time 58896.835867
12:11:55 (19829): called boinc_finish(0)

</stderr_txt>
]]>

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