Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:19:04 (836): wrapper (7.7.26015): starting
07:19:04 (836): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 07:19:04] Arguments: --nthreads 8
[2026-04-18 07:19:04] Threads: 8
[2026-04-18 07:19:04] Checking for CVMFS
[2026-04-18 07:19:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 07:19:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 07:19:06] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 07:19:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 07:19:08] 2.11.2.0 21948 3615 81416 158573 1 11 15970649 25165824 1060 130560 0 380545 99.570 212780 5363 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 07:19:08] CVMFS is ok
[2026-04-18 07:19:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 07:19:08] Checking for apptainer binary...
[2026-04-18 07:19:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 07:19:08] Running /usr/bin/apptainer --version
[2026-04-18 07:19:08] apptainer version 1.3.2-1.el7
[2026-04-18 07:19:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 07:19:26] cg-vwn393.simple-grid.lan
[2026-04-18 07:19:26] apptainer works
[2026-04-18 07:19:26] Set ATHENA_PROC_NUMBER=8
[2026-04-18 07:19:26] Set ATHENA_CORE_NUMBER=8
[2026-04-18 07:19:27] Starting ATLAS job with PandaID=7094829741
[2026-04-18 07:19:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 11:41:39]  *** The last 200 lines of the pilot log: ***
[2026-04-18 11:41:39] 2026-04-18 09:40:28,792 | INFO     | this job has now completed (state=finished)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,792 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,792 | INFO     | log transfer has been attempted: DONE
[2026-04-18 11:41:39] 2026-04-18 09:40:28,792 | INFO     | job 7094829741 has finished - writing final server update
[2026-04-18 11:41:39] 2026-04-18 09:40:28,792 | INFO     | total number of processed events: 400 (read)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,795 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7094829741/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,795 | INFO     | extracted standard info from prmon json
[2026-04-18 11:41:39] 2026-04-18 09:40:28,796 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 11:41:39] 2026-04-18 09:40:28,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 11:41:39] 2026-04-18 09:40:28,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 11:41:39] 2026-04-18 09:40:28,801 | INFO     | fitting pss+swap vs Time
[2026-04-18 11:41:39] 2026-04-18 09:40:28,802 | INFO     | sum of square deviations: 4449281562.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,804 | INFO     | sum of deviations: 92442172144.99998
[2026-04-18 11:41:39] 2026-04-18 09:40:28,805 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,805 | INFO     | mean y: 2466750.24691358
[2026-04-18 11:41:39] 2026-04-18 09:40:28,805 | INFO     | intersect: 2466750.24691358
[2026-04-18 11:41:39] 2026-04-18 09:40:28,805 | INFO     | chi2: 8.35877232010445
[2026-04-18 11:41:39] 2026-04-18 09:40:28,806 | INFO     | sum of square deviations: 4180243959.5
[2026-04-18 11:41:39] 2026-04-18 09:40:28,808 | INFO     | sum of deviations: 106779970947.00002
[2026-04-18 11:41:39] 2026-04-18 09:40:28,808 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,808 | INFO     | mean y: 2474723.1764705884
[2026-04-18 11:41:39] 2026-04-18 09:40:28,809 | INFO     | intersect: 2474723.1764705884
[2026-04-18 11:41:39] 2026-04-18 09:40:28,809 | INFO     | chi2: 7.665559047794431
[2026-04-18 11:41:39] 2026-04-18 09:40:28,809 | INFO     | current chi2=7.665559047794431 (change=8.293242664867282 %)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,809 | INFO     | right removable region: 237
[2026-04-18 11:41:39] 2026-04-18 09:40:28,810 | INFO     | sum of square deviations: 4180243959.5
[2026-04-18 11:41:39] 2026-04-18 09:40:28,815 | INFO     | sum of deviations: 6568819068.50001
[2026-04-18 11:41:39] 2026-04-18 09:40:28,815 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,816 | INFO     | mean y: 2515397.0714285714
[2026-04-18 11:41:39] 2026-04-18 09:40:28,816 | INFO     | intersect: 2515397.0714285714
[2026-04-18 11:41:39] 2026-04-18 09:40:28,816 | INFO     | chi2: 3.28942765701583
[2026-04-18 11:41:39] 2026-04-18 09:40:28,816 | INFO     | current chi2=3.28942765701583 (change=60.64700016886301 %)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,817 | INFO     | sum of square deviations: 3922276332.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,819 | INFO     | sum of deviations: -50104440226.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,819 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,819 | INFO     | mean y: 2548779.6995708155
[2026-04-18 11:41:39] 2026-04-18 09:40:28,820 | INFO     | intersect: 2548779.6995708155
[2026-04-18 11:41:39] 2026-04-18 09:40:28,820 | INFO     | chi2: 1.0084831853369578
[2026-04-18 11:41:39] 2026-04-18 09:40:28,820 | INFO     | current chi2=1.0084831853369578 (change=69.34168218638212 %)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,821 | INFO     | sum of square deviations: 3675146117.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,823 | INFO     | sum of deviations: -50766568965.5
[2026-04-18 11:41:39] 2026-04-18 09:40:28,823 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,823 | INFO     | mean y: 2549132.5219298247
[2026-04-18 11:41:39] 2026-04-18 09:40:28,823 | INFO     | intersect: 2549132.5219298247
[2026-04-18 11:41:39] 2026-04-18 09:40:28,824 | INFO     | chi2: 0.9654904291436709
[2026-04-18 11:41:39] 2026-04-18 09:40:28,824 | INFO     | current chi2=0.9654904291436709 (change=4.263110859793069 %)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,824 | INFO     | left removable region: 15
[2026-04-18 11:41:39] 2026-04-18 09:40:28,824 | INFO     | sum of square deviations: 3392567795.5
[2026-04-18 11:41:39] 2026-04-18 09:40:28,826 | INFO     | sum of deviations: -34276064395.000004
[2026-04-18 11:41:39] 2026-04-18 09:40:28,826 | INFO     | mean x (centered): 0.0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,827 | INFO     | mean y: 2559592.4684684686
[2026-04-18 11:41:39] 2026-04-18 09:40:28,827 | INFO     | intersect: 2559592.4684684686
[2026-04-18 11:41:39] 2026-04-18 09:40:28,827 | INFO     | chi2: 0.17253613294926623
[2026-04-18 11:41:39] 2026-04-18 09:40:28,827 | INFO     | current memory leak: -10.10 B/s (using 222 data points, chi2=0.17)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,828 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,828 | INFO     | ..............................
[2026-04-18 11:41:39] 2026-04-18 09:40:28,828 | INFO     | . Timing measurements:
[2026-04-18 11:41:39] 2026-04-18 09:40:28,828 | INFO     | . get job = 0 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . initial setup = 113 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . payload setup = 311 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . stage-in = 0 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . payload execution = 14929 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . stage-out = 3 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | . log creation = 1 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,829 | INFO     | ..............................
[2026-04-18 11:41:39] 2026-04-18 09:40:28,980 | INFO     | 
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | job summary report
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | --------------------------------------------------
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | PanDA job id: 7094829741
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | task id: 49545114
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | errors: (none)
[2026-04-18 11:41:39] 2026-04-18 09:40:28,981 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | pilot state: finished 
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | transexitcode: 0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | exeerrorcode: 0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | exeerrordiag: 
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | exitcode: 0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | exitmsg: OK
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | cpuconsumptiontime: 56385 s
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | nevents: 400
[2026-04-18 11:41:39] 2026-04-18 09:40:28,982 | INFO     | neventsw: 0
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | pid: 9256
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | pgrp: 9256
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | corecount: 8
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | event service: False
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | sizes: {0: 2281623, 1: 2272870, 2: 2283508, 12: 2283536, 15244: 2314621, 15248: 2323619, 15250: 2323803, 15253: 2323997}
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | --------------------------------------------------
[2026-04-18 11:41:39] 2026-04-18 09:40:28,983 | INFO     | 
[2026-04-18 11:41:39] 2026-04-18 09:40:28,984 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-04-18 11:41:39] 2026-04-18 09:40:29,307 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,307 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,307 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,307 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 11:41:39] 2026-04-18 09:40:29,309 | INFO     | job 7094829741 has completed (purged errors)
[2026-04-18 11:41:39] 2026-04-18 09:40:29,310 | INFO     | overall cleanup function is called
[2026-04-18 11:41:39] 2026-04-18 09:40:30,318 | INFO     | --- collectZombieJob: --- 10, [9256]
[2026-04-18 11:41:39] 2026-04-18 09:40:30,319 | INFO     | zombie collector waiting for pid 9256
[2026-04-18 11:41:39] 2026-04-18 09:40:30,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 11:41:39] 2026-04-18 09:40:30,319 | INFO     | collected zombie processes
[2026-04-18 11:41:39] 2026-04-18 09:40:30,319 | INFO     | will attempt to kill all subprocesses of pid=9256
[2026-04-18 11:41:39] 2026-04-18 09:40:30,405 | INFO     | process IDs to be killed: [9256] (in reverse order)
[2026-04-18 11:41:39] 2026-04-18 09:40:31,495 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 11:41:39] 2026-04-18 09:40:31,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 11:41:39] 2026-04-18 09:40:31,498 | INFO     | did not find any defunct processes belonging to 9256
[2026-04-18 11:41:39] 2026-04-18 09:40:31,499 | INFO     | did not find any defunct processes belonging to 9256
[2026-04-18 11:41:39] 2026-04-18 09:40:31,500 | INFO     | Ready for new job
[2026-04-18 11:41:39] 2026-04-18 09:40:31,502 | INFO     | **************************************
[2026-04-18 11:41:39] 2026-04-18 09:40:31,502 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 11:41:39] 2026-04-18 09:40:31,502 | INFO     | **************************************
[2026-04-18 11:41:39] 2026-04-18 09:40:31,502 | INFO     | 
[2026-04-18 11:41:39] 2026-04-18 09:40:31,503 | INFO     | pilot is running in a VM
[2026-04-18 11:41:39] 2026-04-18 09:40:31,503 | INFO     | architecture information:
[2026-04-18 11:41:39] 2026-04-18 09:40:31,503 | INFO     | executing command: cat /etc/os-release
[2026-04-18 11:41:39] 2026-04-18 09:40:31,794 | INFO     | cat /etc/os-release:
[2026-04-18 11:41:39] NAME="CentOS Linux"
[2026-04-18 11:41:39] VERSION="7 (Core)"
[2026-04-18 11:41:39] ID="centos"
[2026-04-18 11:41:39] ID_LIKE="rhel fedora"
[2026-04-18 11:41:39] VERSION_ID="7"
[2026-04-18 11:41:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 11:41:39] ANSI_COLOR="0;31"
[2026-04-18 11:41:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 11:41:39] HOME_URL="https://www.centos.org/"
[2026-04-18 11:41:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 11:41:39] 
[2026-04-18 11:41:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 11:41:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 11:41:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 11:41:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 11:41:39] 
[2026-04-18 11:41:39] 2026-04-18 09:40:31,794 | INFO     | **************************************
[2026-04-18 11:41:39] 2026-04-18 09:40:32,298 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-04-18 11:41:39] 2026-04-18 09:40:32,411 | INFO     | sufficient remaining disk space (496095985664 B)
[2026-04-18 11:41:39] 2026-04-18 09:40:32,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 11:41:39] 2026-04-18 09:40:32,412 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 11:41:39] 2026-04-18 09:40:32,412 | INFO     | update_server=False
[2026-04-18 11:41:39] 2026-04-18 09:40:32,412 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 11:41:39] 2026-04-18 09:40:32,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:41:39] 2026-04-18 09:40:32,413 | INFO     | aborting loop
[2026-04-18 11:41:39] 2026-04-18 09:40:32,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 11:41:39] 2026-04-18 09:40:32,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 11:41:39] 2026-04-18 09:40:32,525 | INFO     | all payload control threads have been joined
[2026-04-18 11:41:39] 2026-04-18 09:40:32,833 | INFO     | all data control threads have been joined
[2026-04-18 11:41:39] 2026-04-18 09:40:33,418 | INFO     | [job] retrieve thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,419 | INFO     | [job] job monitor thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,532 | INFO     | [payload] control thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,601 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,602 | INFO     | [payload] failed_post thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,771 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,801 | INFO     | all job control threads have been joined
[2026-04-18 11:41:39] 2026-04-18 09:40:33,840 | INFO     | [data] control thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:33,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 11:41:39] 2026-04-18 09:40:34,053 | INFO     | [job] validate thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,206 | INFO     | [data] copytool_in thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,236 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,327 | INFO     | [payload] validate_post thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,420 | INFO     | [data] copytool_out thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,808 | INFO     | [job] control thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:34,855 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:35,002 | INFO     | [job] queue monitor thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:40:36,477 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 11:41:39] 2026-04-18 09:41:00,615 | INFO     | PID=4812 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-18 11:41:39] 2026-04-18 09:41:00,615 | INFO     | .. there are 2 such processes running
[2026-04-18 11:41:39] 2026-04-18 09:41:00,616 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 11:41:39] 2026-04-18 09:41:00,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 11:41:39] 2026-04-18 09:41:00,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 11:41:39] 2026-04-18 09:41:28,762 | INFO     | [monitor] cgroup control has ended
[2026-04-18 11:41:39] 2026-04-18 09:41:30,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715763803968)>', '<ExcThread(monitor, started 140715292071680)>']
[2026-04-18 11:41:39] 2026-04-18 09:41:30,796 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 11:41:39] 2026-04-18 09:41:30,797 | INFO     | [monitor] control thread has ended
[2026-04-18 11:41:39] 2026-04-18 09:41:35,398 | INFO     | all workflow threads have been joined
[2026-04-18 11:41:39] 2026-04-18 09:41:35,399 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 11:41:39] 2026-04-18 09:41:35,399 | INFO     | traces error code: 0
[2026-04-18 11:41:39] 2026-04-18 09:41:35,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 11:41:39] 2026-04-18 09:41:35,952 [wrapper] ==== pilot stdout END ====
[2026-04-18 11:41:39] 2026-04-18 09:41:36,058 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 11:41:39] 2026-04-18 09:41:36,188 [wrapper] pilotpid: 4812
[2026-04-18 11:41:39] 2026-04-18 09:41:36,280 [wrapper] Pilot exit status: 0
[2026-04-18 11:41:39] 2026-04-18 09:41:36,671 [wrapper] pandaids: 7094829741
[2026-04-18 11:41:39] 2026-04-18 09:41:36,766 [wrapper] cleanup supervisor_pilot 15158 4813
[2026-04-18 11:41:39] 2026-04-18 09:41:36,833 [wrapper] Test setup, not cleaning
[2026-04-18 11:41:39] 2026-04-18 09:41:36,921 [wrapper] apfmon messages muted
[2026-04-18 11:41:39] 2026-04-18 09:41:37,027 [wrapper] ==== wrapper stdout END ====
[2026-04-18 11:41:39] 2026-04-18 09:41:37,115 [wrapper] ==== wrapper stderr END ====
[2026-04-18 11:41:39]  *** Error codes and diagnostics ***
[2026-04-18 11:41:39]     "exeErrorCode": 0,
[2026-04-18 11:41:39]     "pilotErrorCode": 0,
[2026-04-18 11:41:39]  *** Listing of results directory ***
[2026-04-18 11:41:39] total 464816
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc    644190 Apr 18 06:52 pilot3.tar.gz
[2026-04-18 11:41:39] -rwx------. 1 boinc boinc     36322 Apr 18 06:54 runpilot2-wrapper.sh
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc      5094 Apr 18 07:02 queuedata.json
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc       100 Apr 18 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 11:41:39] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 07:19 run_atlas
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc       105 Apr 18 07:19 job.xml
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc      6307 Apr 18 07:19 init_data.xml
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc 278024856 Apr 18 07:19 EVNT.49539591._000673.pool.root.1
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc     15665 Apr 18 07:19 start_atlas.sh
[2026-04-18 11:41:39] drwxrwx--x. 2 boinc boinc        68 Apr 18 07:19 shared
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc    656930 Apr 18 07:19 input.tar.gz
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc         0 Apr 18 07:19 boinc_lockfile
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc      2605 Apr 18 07:19 pandaJob.out
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc       415 Apr 18 07:25 workernode_map.json
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc    997901 Apr 18 07:26 agis_schedconf.cvmfs.json
[2026-04-18 11:41:39] drwx------. 5 boinc boinc      4096 Apr 18 07:26 pilot3
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc 190287883 Apr 18 11:38 HITS.49545114._016864.pool.root.1
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc       488 Apr 18 11:39 boinc_task_state.xml
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc        95 Apr 18 11:40 pilot_heartbeat.json
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc      1011 Apr 18 11:40 memory_monitor_summary.json
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc   1512404 Apr 18 11:40 agis_ddmendpoints.agis.ALL.json
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc    401463 Apr 18 11:40 log.49545114._016864.job.log.tgz.1
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc      6336 Apr 18 11:40 heartbeat_new.json
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc      6227 Apr 18 11:40 heartbeat.json
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc      8192 Apr 18 11:41 boinc_mmap_file
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc        28 Apr 18 11:41 wrapper_checkpoint.txt
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc      4878 Apr 18 11:41 pilotlog.txt
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc   1402070 Apr 18 11:41 log.49545114._016864.job.log.1
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc       357 Apr 18 11:41 output.list
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc       410 Apr 18 11:41 runtime_log
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc   1822720 Apr 18 11:41 result.tar.gz
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc      8438 Apr 18 11:41 runtime_log.err
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc       656 Apr 18 11:41 0e671e1f8dcb.diag
[2026-04-18 11:41:39] -rw-r--r--. 1 boinc boinc     20617 Apr 18 11:41 stderr.txt
[2026-04-18 11:41:39] HITS file was successfully produced:
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc 190287883 Apr 18 11:38 shared/HITS.pool.root.1
[2026-04-18 11:41:39]  *** Contents of shared directory: ***
[2026-04-18 11:41:39] total 459784
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc 278024856 Apr 18 07:19 ATLAS.root_0
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc     15665 Apr 18 07:19 start_atlas.sh
[2026-04-18 11:41:39] -rw-r--r--. 2 boinc boinc    656930 Apr 18 07:19 input.tar.gz
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc 190287883 Apr 18 11:38 HITS.pool.root.1
[2026-04-18 11:41:39] -rw-------. 1 boinc boinc   1822720 Apr 18 11:41 result.tar.gz
11:41:41 (836): run_atlas exited; CPU time 56544.191968
11:41:41 (836): called boinc_finish(0)

</stderr_txt>
]]>

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