Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:26:43 (24420): wrapper (7.7.26015): starting
15:26:43 (24420): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 15:26:43] Arguments: --nthreads 8
[2026-04-18 15:26:43] Threads: 8
[2026-04-18 15:26:43] Checking for CVMFS
[2026-04-18 15:26:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 15:26:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 15:26:44] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 15:26:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 15:26:44] 2.11.2.0 16039 4102 93860 158585 2 77 17649629 25165824 395 130560 0 842805 99.700 3756319 33431 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 15:26:44] CVMFS is ok
[2026-04-18 15:26:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 15:26:44] Checking for apptainer binary...
[2026-04-18 15:26:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 15:26:44] Running /usr/bin/apptainer --version
[2026-04-18 15:26:44] apptainer version 1.3.2-1.el7
[2026-04-18 15:26:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 15:26:46] cg-vwn424.simple-grid.lan
[2026-04-18 15:26:46] apptainer works
[2026-04-18 15:26:46] Set ATHENA_PROC_NUMBER=8
[2026-04-18 15:26:46] Set ATHENA_CORE_NUMBER=8
[2026-04-18 15:26:46] Starting ATLAS job with PandaID=7093053416
[2026-04-18 15:26:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 18:43:43]  *** The last 200 lines of the pilot log: ***
[2026-04-18 18:43:43] 2026-04-18 16:42:31,037 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,037 | INFO     | log transfer has been attempted: DONE
[2026-04-18 18:43:43] 2026-04-18 16:42:31,037 | INFO     | job 7093053416 has finished - writing final server update
[2026-04-18 18:43:43] 2026-04-18 16:42:31,038 | INFO     | total number of processed events: 400 (read)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,040 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7093053416/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,040 | INFO     | extracted standard info from prmon json
[2026-04-18 18:43:43] 2026-04-18 16:42:31,041 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 18:43:43] 2026-04-18 16:42:31,041 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 18:43:43] 2026-04-18 16:42:31,041 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 18:43:43] 2026-04-18 16:42:31,045 | INFO     | fitting pss+swap vs Time
[2026-04-18 18:43:43] 2026-04-18 16:42:31,046 | INFO     | sum of square deviations: 2194675568.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,047 | INFO     | sum of deviations: -13435200833.99999
[2026-04-18 18:43:43] 2026-04-18 16:42:31,047 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,047 | INFO     | mean y: 2538964.2395833335
[2026-04-18 18:43:43] 2026-04-18 16:42:31,048 | INFO     | intersect: 2538964.2395833335
[2026-04-18 18:43:43] 2026-04-18 16:42:31,048 | INFO     | chi2: 2.5831180555009796
[2026-04-18 18:43:43] 2026-04-18 16:42:31,048 | INFO     | sum of square deviations: 2027639878.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,050 | INFO     | sum of deviations: -180201991.00000343
[2026-04-18 18:43:43] 2026-04-18 16:42:31,050 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,050 | INFO     | mean y: 2550817.898395722
[2026-04-18 18:43:43] 2026-04-18 16:42:31,050 | INFO     | intersect: 2550817.898395722
[2026-04-18 18:43:43] 2026-04-18 16:42:31,051 | INFO     | chi2: 1.8204838322507821
[2026-04-18 18:43:43] 2026-04-18 16:42:31,051 | INFO     | current chi2=1.8204838322507821 (change=29.52378508702303 %)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,051 | INFO     | sum of square deviations: 1869302025.5
[2026-04-18 18:43:43] 2026-04-18 16:42:31,053 | INFO     | sum of deviations: -27507706.000003614
[2026-04-18 18:43:43] 2026-04-18 16:42:31,053 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,056 | INFO     | mean y: 2550965.032967033
[2026-04-18 18:43:43] 2026-04-18 16:42:31,056 | INFO     | intersect: 2550965.032967033
[2026-04-18 18:43:43] 2026-04-18 16:42:31,057 | INFO     | chi2: 1.820827823788349
[2026-04-18 18:43:43] 2026-04-18 16:42:31,057 | INFO     | current chi2=1.820827823788349 (change=-0.018895610687276708 %)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,057 | INFO     | right removable region: 181
[2026-04-18 18:43:43] 2026-04-18 16:42:31,061 | INFO     | sum of square deviations: 2027639878.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,062 | INFO     | sum of deviations: -45351822988.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,062 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,062 | INFO     | mean y: 2567783.860962567
[2026-04-18 18:43:43] 2026-04-18 16:42:31,062 | INFO     | intersect: 2567783.860962567
[2026-04-18 18:43:43] 2026-04-18 16:42:31,063 | INFO     | chi2: 0.9854601820710883
[2026-04-18 18:43:43] 2026-04-18 16:42:31,063 | INFO     | current chi2=0.9854601820710883 (change=61.8499750728596 %)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,063 | INFO     | sum of square deviations: 1869302025.5
[2026-04-18 18:43:43] 2026-04-18 16:42:31,064 | INFO     | sum of deviations: -46017469292.50001
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | mean y: 2568369.9065934066
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | intersect: 2568369.9065934066
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | chi2: 0.9580208296021342
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | current chi2=0.9580208296021342 (change=2.784420209783243 %)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,065 | INFO     | left removable region: 10
[2026-04-18 18:43:43] 2026-04-18 16:42:31,066 | INFO     | sum of square deviations: 1550429070.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,067 | INFO     | sum of deviations: -31447247344.999996
[2026-04-18 18:43:43] 2026-04-18 16:42:31,067 | INFO     | mean x (centered): 0.0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,067 | INFO     | mean y: 2582996.9707602337
[2026-04-18 18:43:43] 2026-04-18 16:42:31,067 | INFO     | intersect: 2582996.9707602337
[2026-04-18 18:43:43] 2026-04-18 16:42:31,067 | INFO     | chi2: 0.161149671548686
[2026-04-18 18:43:43] 2026-04-18 16:42:31,068 | INFO     | current memory leak: -20.28 B/s (using 171 data points, chi2=0.16)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,068 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,068 | INFO     | ..............................
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . Timing measurements:
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . get job = 0 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . initial setup = 9 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . payload setup = 18 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . stage-in = 0 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . payload execution = 11684 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . stage-out = 3 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | . log creation = 1 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,069 | INFO     | ..............................
[2026-04-18 18:43:43] 2026-04-18 16:42:31,489 | INFO     | 
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | job summary report
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | --------------------------------------------------
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | PanDA job id: 7093053416
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | task id: 49545114
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | errors: (none)
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | pilot state: finished 
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | transexitcode: 0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,490 | INFO     | exeerrorcode: 0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | exeerrordiag: 
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | exitcode: 0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | exitmsg: OK
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | cpuconsumptiontime: 57345 s
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | nevents: 400
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | neventsw: 0
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | pid: 416
[2026-04-18 18:43:43] 2026-04-18 16:42:31,491 | INFO     | pgrp: 416
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | corecount: 8
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | event service: False
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | sizes: {0: 2281623, 1: 2283508, 2: 2283508, 11706: 2312977, 11707: 2312976, 11711: 2322030, 11713: 2322214, 11715: 2322408}
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | --------------------------------------------------
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | 
[2026-04-18 18:43:43] 2026-04-18 16:42:31,492 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-04-18 18:43:43] 2026-04-18 16:42:32,085 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,085 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | job 7093053416 has completed (purged errors)
[2026-04-18 18:43:43] 2026-04-18 16:42:32,087 | INFO     | overall cleanup function is called
[2026-04-18 18:43:43] 2026-04-18 16:42:33,101 | INFO     | --- collectZombieJob: --- 10, [416]
[2026-04-18 18:43:43] 2026-04-18 16:42:33,101 | INFO     | zombie collector waiting for pid 416
[2026-04-18 18:43:43] 2026-04-18 16:42:33,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 18:43:43] 2026-04-18 16:42:33,102 | INFO     | collected zombie processes
[2026-04-18 18:43:43] 2026-04-18 16:42:33,102 | INFO     | will attempt to kill all subprocesses of pid=416
[2026-04-18 18:43:43] 2026-04-18 16:42:33,171 | INFO     | process IDs to be killed: [416] (in reverse order)
[2026-04-18 18:43:43] 2026-04-18 16:42:34,036 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 18:43:43] 2026-04-18 16:42:34,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 18:43:43] 2026-04-18 16:42:34,038 | INFO     | did not find any defunct processes belonging to 416
[2026-04-18 18:43:43] 2026-04-18 16:42:34,040 | INFO     | did not find any defunct processes belonging to 416
[2026-04-18 18:43:43] 2026-04-18 16:42:34,040 | INFO     | Ready for new job
[2026-04-18 18:43:43] 2026-04-18 16:42:34,045 | INFO     | **************************************
[2026-04-18 18:43:43] 2026-04-18 16:42:34,045 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 18:43:43] 2026-04-18 16:42:34,045 | INFO     | **************************************
[2026-04-18 18:43:43] 2026-04-18 16:42:34,045 | INFO     | 
[2026-04-18 18:43:43] 2026-04-18 16:42:34,046 | INFO     | pilot is running in a VM
[2026-04-18 18:43:43] 2026-04-18 16:42:34,046 | INFO     | architecture information:
[2026-04-18 18:43:43] 2026-04-18 16:42:34,052 | INFO     | executing command: cat /etc/os-release
[2026-04-18 18:43:43] 2026-04-18 16:42:34,356 | INFO     | cat /etc/os-release:
[2026-04-18 18:43:43] NAME="CentOS Linux"
[2026-04-18 18:43:43] VERSION="7 (Core)"
[2026-04-18 18:43:43] ID="centos"
[2026-04-18 18:43:43] ID_LIKE="rhel fedora"
[2026-04-18 18:43:43] VERSION_ID="7"
[2026-04-18 18:43:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 18:43:43] ANSI_COLOR="0;31"
[2026-04-18 18:43:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 18:43:43] HOME_URL="https://www.centos.org/"
[2026-04-18 18:43:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 18:43:43] 
[2026-04-18 18:43:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 18:43:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 18:43:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 18:43:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 18:43:43] 
[2026-04-18 18:43:43] 2026-04-18 16:42:34,356 | INFO     | **************************************
[2026-04-18 18:43:43] 2026-04-18 16:42:34,859 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-18 18:43:43] 2026-04-18 16:42:35,129 | INFO     | sufficient remaining disk space (496535339008 B)
[2026-04-18 18:43:43] 2026-04-18 16:42:35,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 18:43:43] 2026-04-18 16:42:35,129 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 18:43:43] 2026-04-18 16:42:35,130 | INFO     | update_server=False
[2026-04-18 18:43:43] 2026-04-18 16:42:35,130 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 18:43:43] 2026-04-18 16:42:35,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:43:43] 2026-04-18 16:42:35,130 | INFO     | aborting loop
[2026-04-18 18:43:43] 2026-04-18 16:42:35,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 18:43:43] 2026-04-18 16:42:35,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 18:43:43] 2026-04-18 16:42:35,902 | INFO     | all payload control threads have been joined
[2026-04-18 18:43:43] 2026-04-18 16:42:35,976 | INFO     | all data control threads have been joined
[2026-04-18 18:43:43] 2026-04-18 16:42:36,135 | INFO     | [job] job monitor thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,136 | INFO     | [job] retrieve thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:43:43] 2026-04-18 16:42:36,575 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,672 | INFO     | all job control threads have been joined
[2026-04-18 18:43:43] 2026-04-18 16:42:36,726 | INFO     | [data] copytool_in thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,775 | INFO     | [job] validate thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,908 | INFO     | [payload] control thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,917 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,958 | INFO     | [payload] validate_post thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:36,982 | INFO     | [data] control thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:37,145 | INFO     | [data] copytool_out thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:37,242 | INFO     | [job] queue monitor thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:37,332 | INFO     | [payload] failed_post thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:37,608 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:37,678 | INFO     | [job] control thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:39,150 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:42:45,538 | INFO     | job.realtimelogging is not enabled
[2026-04-18 18:43:43] 2026-04-18 16:42:46,544 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 18:43:43] 2026-04-18 16:43:04,370 | INFO     | PID=28456 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-18 18:43:43] 2026-04-18 16:43:04,370 | INFO     | .. there are 2 such processes running
[2026-04-18 18:43:43] 2026-04-18 16:43:04,371 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 18:43:43] 2026-04-18 16:43:04,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 18:43:43] 2026-04-18 16:43:04,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 18:43:43] 2026-04-18 16:43:33,936 | INFO     | [monitor] cgroup control has ended
[2026-04-18 18:43:43] 2026-04-18 16:43:34,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701958227776)>', '<ExcThread(monitor, started 139701369423616)>']
[2026-04-18 18:43:43] 2026-04-18 16:43:34,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 18:43:43] 2026-04-18 16:43:34,553 | INFO     | [monitor] control thread has ended
[2026-04-18 18:43:43] 2026-04-18 16:43:39,547 | INFO     | all workflow threads have been joined
[2026-04-18 18:43:43] 2026-04-18 16:43:39,548 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 18:43:43] 2026-04-18 16:43:39,548 | INFO     | traces error code: 0
[2026-04-18 18:43:43] 2026-04-18 16:43:39,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 18:43:43] 2026-04-18 16:43:39,869 [wrapper] ==== pilot stdout END ====
[2026-04-18 18:43:43] 2026-04-18 16:43:39,957 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 18:43:43] 2026-04-18 16:43:40,065 [wrapper] pilotpid: 28456
[2026-04-18 18:43:43] 2026-04-18 16:43:40,185 [wrapper] Pilot exit status: 0
[2026-04-18 18:43:43] 2026-04-18 16:43:40,611 [wrapper] pandaids: 7093053416
[2026-04-18 18:43:43] 2026-04-18 16:43:41,460 [wrapper] cleanup supervisor_pilot 22607 28457
[2026-04-18 18:43:43] 2026-04-18 16:43:41,556 [wrapper] Test setup, not cleaning
[2026-04-18 18:43:43] 2026-04-18 16:43:41,650 [wrapper] apfmon messages muted
[2026-04-18 18:43:43] 2026-04-18 16:43:41,744 [wrapper] ==== wrapper stdout END ====
[2026-04-18 18:43:43] 2026-04-18 16:43:41,856 [wrapper] ==== wrapper stderr END ====
[2026-04-18 18:43:43]  *** Error codes and diagnostics ***
[2026-04-18 18:43:43]     "exeErrorCode": 0,
[2026-04-18 18:43:43]     "pilotErrorCode": 0,
[2026-04-18 18:43:43]  *** Listing of results directory ***
[2026-04-18 18:43:43] total 460056
[2026-04-18 18:43:43] -rwx------. 1 boinc boinc     36322 Apr 16 18:04 runpilot2-wrapper.sh
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc    644190 Apr 17 10:44 pilot3.tar.gz
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc      5094 Apr 18 05:21 queuedata.json
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc       100 Apr 18 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 18:43:43] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 15:26 run_atlas
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc       105 Apr 18 15:26 job.xml
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc 276011139 Apr 18 15:26 EVNT.49539591._000575.pool.root.1
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc    656934 Apr 18 15:26 input.tar.gz
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc      6305 Apr 18 15:26 init_data.xml
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc     15665 Apr 18 15:26 start_atlas.sh
[2026-04-18 18:43:43] drwxrwx--x. 2 boinc boinc        68 Apr 18 15:26 shared
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc         0 Apr 18 15:26 boinc_lockfile
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc      2605 Apr 18 15:26 pandaJob.out
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc    997973 Apr 18 15:27 agis_schedconf.cvmfs.json
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc       415 Apr 18 15:27 workernode_map.json
[2026-04-18 18:43:43] drwx------. 5 boinc boinc      4096 Apr 18 15:27 pilot3
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc 188109181 Apr 18 18:40 HITS.49545114._014317.pool.root.1
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc       488 Apr 18 18:41 boinc_task_state.xml
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc      1022 Apr 18 18:42 memory_monitor_summary.json
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc   1512404 Apr 18 18:42 agis_ddmendpoints.agis.ALL.json
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc    376260 Apr 18 18:42 log.49545114._014317.job.log.tgz.1
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc      6340 Apr 18 18:42 heartbeat_new.json
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc      6231 Apr 18 18:42 heartbeat.json
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc        95 Apr 18 18:43 pilot_heartbeat.json
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc      8192 Apr 18 18:43 boinc_mmap_file
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc        28 Apr 18 18:43 wrapper_checkpoint.txt
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc      4951 Apr 18 18:43 pilotlog.txt
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc   1088981 Apr 18 18:43 log.49545114._014317.job.log.1
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc       357 Apr 18 18:43 output.list
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc       410 Apr 18 18:43 runtime_log
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc   1484800 Apr 18 18:43 result.tar.gz
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc      8438 Apr 18 18:43 runtime_log.err
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc       655 Apr 18 18:43 088f6515f4e8.diag
[2026-04-18 18:43:43] -rw-r--r--. 1 boinc boinc     20621 Apr 18 18:43 stderr.txt
[2026-04-18 18:43:43] HITS file was successfully produced:
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc 188109181 Apr 18 18:40 shared/HITS.pool.root.1
[2026-04-18 18:43:43]  *** Contents of shared directory: ***
[2026-04-18 18:43:43] total 455360
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc 276011139 Apr 18 15:26 ATLAS.root_0
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc    656934 Apr 18 15:26 input.tar.gz
[2026-04-18 18:43:43] -rw-r--r--. 2 boinc boinc     15665 Apr 18 15:26 start_atlas.sh
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc 188109181 Apr 18 18:40 HITS.pool.root.1
[2026-04-18 18:43:43] -rw-------. 1 boinc boinc   1484800 Apr 18 18:43 result.tar.gz
18:43:45 (24420): run_atlas exited; CPU time 57446.587477
18:43:45 (24420): called boinc_finish(0)

</stderr_txt>
]]>

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