Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:07:36 (27272): wrapper (7.7.26015): starting
15:07:36 (27272): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 15:07:36] Arguments: --nthreads 8
[2026-04-18 15:07:36] Threads: 8
[2026-04-18 15:07:36] Checking for CVMFS
[2026-04-18 15:07:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 15:07:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 15:07:38] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 15:07:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 15:07:39] 2.11.2.0 23402 4090 75856 158584 2 53 18998983 25165824 1060 130560 0 837601 99.413 4667041 15524 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-18 15:07:39] CVMFS is ok
[2026-04-18 15:07:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 15:07:39] Checking for apptainer binary...
[2026-04-18 15:07:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 15:07:39] Running /usr/bin/apptainer --version
[2026-04-18 15:07:40] apptainer version 1.3.2-1.el7
[2026-04-18 15:07:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 15:07:47] cg-vwn468.simple-grid.lan
[2026-04-18 15:07:47] apptainer works
[2026-04-18 15:07:47] Set ATHENA_PROC_NUMBER=8
[2026-04-18 15:07:47] Set ATHENA_CORE_NUMBER=8
[2026-04-18 15:07:47] Starting ATLAS job with PandaID=7093053491
[2026-04-18 15:07:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 18:04:22]  *** The last 200 lines of the pilot log: ***
[2026-04-18 18:04:22] 2026-04-18 16:03:10,432 | INFO     | this job has now completed (state=finished)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,432 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,432 | INFO     | log transfer has been attempted: DONE
[2026-04-18 18:04:22] 2026-04-18 16:03:10,432 | INFO     | job 7093053491 has finished - writing final server update
[2026-04-18 18:04:22] 2026-04-18 16:03:10,432 | INFO     | total number of processed events: 400 (read)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,434 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7093053491/memory_monitor_summary.json (trf name=prmon)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,435 | INFO     | extracted standard info from prmon json
[2026-04-18 18:04:22] 2026-04-18 16:03:10,435 | INFO     | extracted standard memory fields from prmon json
[2026-04-18 18:04:22] 2026-04-18 16:03:10,435 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 18:04:22] 2026-04-18 16:03:10,436 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 18:04:22] 2026-04-18 16:03:10,439 | INFO     | fitting pss+swap vs Time
[2026-04-18 18:04:22] 2026-04-18 16:03:10,439 | INFO     | sum of square deviations: 1318277740.5
[2026-04-18 18:04:22] 2026-04-18 16:03:10,441 | INFO     | sum of deviations: -19117396675.499992
[2026-04-18 18:04:22] 2026-04-18 16:03:10,441 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,441 | INFO     | mean y: 2519570.0802469137
[2026-04-18 18:04:22] 2026-04-18 16:03:10,441 | INFO     | intersect: 2519570.0802469137
[2026-04-18 18:04:22] 2026-04-18 16:03:10,441 | INFO     | chi2: 4.467988567901448
[2026-04-18 18:04:22] 2026-04-18 16:03:10,442 | INFO     | sum of square deviations: 1199940638.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,443 | INFO     | sum of deviations: 3685476772.0000014
[2026-04-18 18:04:22] 2026-04-18 16:03:10,443 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,443 | INFO     | mean y: 2548423.878980892
[2026-04-18 18:04:22] 2026-04-18 16:03:10,443 | INFO     | intersect: 2548423.878980892
[2026-04-18 18:04:22] 2026-04-18 16:03:10,444 | INFO     | chi2: 2.8533608364271625
[2026-04-18 18:04:22] 2026-04-18 16:03:10,444 | INFO     | current chi2=2.8533608364271625 (change=36.13768717032894 %)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,444 | INFO     | sum of square deviations: 1088905998.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,445 | INFO     | sum of deviations: 3922372712.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,445 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,445 | INFO     | mean y: 2548749.5
[2026-04-18 18:04:22] 2026-04-18 16:03:10,446 | INFO     | intersect: 2548749.5
[2026-04-18 18:04:22] 2026-04-18 16:03:10,446 | INFO     | chi2: 2.8561593565683525
[2026-04-18 18:04:22] 2026-04-18 16:03:10,446 | INFO     | current chi2=2.8561593565683525 (change=-0.09807803154311685 %)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,446 | INFO     | right removable region: 151
[2026-04-18 18:04:22] 2026-04-18 16:03:10,446 | INFO     | sum of square deviations: 1199940638.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,451 | INFO     | sum of deviations: -56031348273.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,451 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,451 | INFO     | mean y: 2566661.2229299364
[2026-04-18 18:04:22] 2026-04-18 16:03:10,451 | INFO     | intersect: 2566661.2229299364
[2026-04-18 18:04:22] 2026-04-18 16:03:10,452 | INFO     | chi2: 1.917000645511457
[2026-04-18 18:04:22] 2026-04-18 16:03:10,452 | INFO     | current chi2=1.917000645511457 (change=57.09477281827859 %)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,452 | INFO     | sum of square deviations: 1088905998.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,453 | INFO     | sum of deviations: -55830170364.5
[2026-04-18 18:04:22] 2026-04-18 16:03:10,453 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,453 | INFO     | mean y: 2566306.1513157897
[2026-04-18 18:04:22] 2026-04-18 16:03:10,453 | INFO     | intersect: 2566306.1513157897
[2026-04-18 18:04:22] 2026-04-18 16:03:10,454 | INFO     | chi2: 1.8909902538823222
[2026-04-18 18:04:22] 2026-04-18 16:03:10,454 | INFO     | current chi2=1.8909902538823222 (change=1.356827484124043 %)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,454 | INFO     | left removable region: 10
[2026-04-18 18:04:22] 2026-04-18 16:03:10,454 | INFO     | sum of square deviations: 869188390.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,455 | INFO     | sum of deviations: -31705090990.000004
[2026-04-18 18:04:22] 2026-04-18 16:03:10,455 | INFO     | mean x (centered): 0.0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,456 | INFO     | mean y: 2601276.134751773
[2026-04-18 18:04:22] 2026-04-18 16:03:10,456 | INFO     | intersect: 2601276.134751773
[2026-04-18 18:04:22] 2026-04-18 16:03:10,456 | INFO     | chi2: 0.15152596764885193
[2026-04-18 18:04:22] 2026-04-18 16:03:10,456 | INFO     | current memory leak: -36.48 B/s (using 141 data points, chi2=0.15)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | could have reported an average CPU frequency of 2250 MHz (9 samples)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | ..............................
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . Timing measurements:
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . get job = 0 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . initial setup = 109 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . payload setup = 184 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . stage-in = 0 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,457 | INFO     | . payload execution = 9946 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,458 | INFO     | . stage-out = 3 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,458 | INFO     | . log creation = 1 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,458 | INFO     | ..............................
[2026-04-18 18:04:22] 2026-04-18 16:03:10,587 | INFO     | 
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | job summary report
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | --------------------------------------------------
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | PanDA job id: 7093053491
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | task id: 49545114
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | errors: (none)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | pilot state: finished 
[2026-04-18 18:04:22] 2026-04-18 16:03:10,588 | INFO     | transexitcode: 0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | exeerrorcode: 0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | exeerrordiag: 
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | exitcode: 0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | exitmsg: OK
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | cpuconsumptiontime: 53335 s
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | nevents: 400
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | neventsw: 0
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | pid: 3305
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | pgrp: 3305
[2026-04-18 18:04:22] 2026-04-18 16:03:10,589 | INFO     | corecount: 8
[2026-04-18 18:04:22] 2026-04-18 16:03:10,590 | INFO     | event service: False
[2026-04-18 18:04:22] 2026-04-18 16:03:10,590 | INFO     | sizes: {0: 2281022, 1: 2281934, 2: 2283536, 12: 2283536, 10135: 2312098, 10136: 2312097, 10139: 2321279, 10141: 2321335, 10143: 2321593}
[2026-04-18 18:04:22] 2026-04-18 16:03:10,590 | INFO     | --------------------------------------------------
[2026-04-18 18:04:22] 2026-04-18 16:03:10,590 | INFO     | 
[2026-04-18 18:04:22] 2026-04-18 16:03:10,590 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | job 7093053491 has completed (purged errors)
[2026-04-18 18:04:22] 2026-04-18 16:03:10,859 | INFO     | overall cleanup function is called
[2026-04-18 18:04:22] 2026-04-18 16:03:11,868 | INFO     | --- collectZombieJob: --- 10, [3305]
[2026-04-18 18:04:22] 2026-04-18 16:03:11,868 | INFO     | zombie collector waiting for pid 3305
[2026-04-18 18:04:22] 2026-04-18 16:03:11,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 18:04:22] 2026-04-18 16:03:11,868 | INFO     | collected zombie processes
[2026-04-18 18:04:22] 2026-04-18 16:03:11,868 | INFO     | will attempt to kill all subprocesses of pid=3305
[2026-04-18 18:04:22] 2026-04-18 16:03:11,945 | INFO     | process IDs to be killed: [3305] (in reverse order)
[2026-04-18 18:04:22] 2026-04-18 16:03:12,715 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 18:04:22] 2026-04-18 16:03:12,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 18:04:22] 2026-04-18 16:03:12,718 | INFO     | did not find any defunct processes belonging to 3305
[2026-04-18 18:04:22] 2026-04-18 16:03:12,719 | INFO     | did not find any defunct processes belonging to 3305
[2026-04-18 18:04:22] 2026-04-18 16:03:12,720 | INFO     | Ready for new job
[2026-04-18 18:04:22] 2026-04-18 16:03:12,721 | INFO     | **************************************
[2026-04-18 18:04:22] 2026-04-18 16:03:12,721 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 18:04:22] 2026-04-18 16:03:12,721 | INFO     | **************************************
[2026-04-18 18:04:22] 2026-04-18 16:03:12,722 | INFO     | 
[2026-04-18 18:04:22] 2026-04-18 16:03:12,722 | INFO     | pilot is running in a VM
[2026-04-18 18:04:22] 2026-04-18 16:03:12,722 | INFO     | architecture information:
[2026-04-18 18:04:22] 2026-04-18 16:03:12,723 | INFO     | executing command: cat /etc/os-release
[2026-04-18 18:04:22] 2026-04-18 16:03:12,983 | INFO     | cat /etc/os-release:
[2026-04-18 18:04:22] NAME="CentOS Linux"
[2026-04-18 18:04:22] VERSION="7 (Core)"
[2026-04-18 18:04:22] ID="centos"
[2026-04-18 18:04:22] ID_LIKE="rhel fedora"
[2026-04-18 18:04:22] VERSION_ID="7"
[2026-04-18 18:04:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 18:04:22] ANSI_COLOR="0;31"
[2026-04-18 18:04:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 18:04:22] HOME_URL="https://www.centos.org/"
[2026-04-18 18:04:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 18:04:22] 
[2026-04-18 18:04:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 18:04:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 18:04:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 18:04:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 18:04:22] 
[2026-04-18 18:04:22] 2026-04-18 16:03:12,984 | INFO     | **************************************
[2026-04-18 18:04:22] 2026-04-18 16:03:13,487 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-18 18:04:22] 2026-04-18 16:03:13,757 | INFO     | sufficient remaining disk space (497437114368 B)
[2026-04-18 18:04:22] 2026-04-18 16:03:13,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 18:04:22] 2026-04-18 16:03:13,758 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 18:04:22] 2026-04-18 16:03:13,758 | INFO     | update_server=False
[2026-04-18 18:04:22] 2026-04-18 16:03:13,758 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 18:04:22] 2026-04-18 16:03:13,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:04:22] 2026-04-18 16:03:13,759 | INFO     | aborting loop
[2026-04-18 18:04:22] 2026-04-18 16:03:13,763 | INFO     | all job control threads have been joined
[2026-04-18 18:04:22] 2026-04-18 16:03:14,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 18:04:22] 2026-04-18 16:03:14,198 | INFO     | all data control threads have been joined
[2026-04-18 18:04:22] 2026-04-18 16:03:14,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 18:04:22] 2026-04-18 16:03:14,384 | INFO     | all payload control threads have been joined
[2026-04-18 18:04:22] 2026-04-18 16:03:14,764 | INFO     | [job] retrieve thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:14,765 | INFO     | [job] job monitor thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:14,769 | INFO     | [job] control thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,073 | INFO     | [payload] failed_post thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,091 | INFO     | [payload] validate_post thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,204 | INFO     | [data] control thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,390 | INFO     | [payload] control thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,532 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,568 | INFO     | [data] copytool_in thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 18:04:22] 2026-04-18 16:03:15,690 | INFO     | [job] validate thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:15,715 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:16,002 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:16,010 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:16,364 | INFO     | [data] copytool_out thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:16,612 | INFO     | [job] queue monitor thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:18,086 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 18:04:22] 2026-04-18 16:03:42,189 | INFO     | PID=31260 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-18 18:04:22] 2026-04-18 16:03:42,189 | INFO     | .. there are 2 such processes running
[2026-04-18 18:04:22] 2026-04-18 16:03:42,189 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 18:04:22] 2026-04-18 16:03:42,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 18:04:22] 2026-04-18 16:03:42,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 18:04:22] 2026-04-18 16:04:11,467 | INFO     | [monitor] cgroup control has ended
[2026-04-18 18:04:22] 2026-04-18 16:04:12,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899181188928)>', '<ExcThread(monitor, started 139898728199936)>']
[2026-04-18 18:04:22] 2026-04-18 16:04:12,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 18:04:22] 2026-04-18 16:04:12,369 | INFO     | [monitor] control thread has ended
[2026-04-18 18:04:22] 2026-04-18 16:04:17,220 | INFO     | all workflow threads have been joined
[2026-04-18 18:04:22] 2026-04-18 16:04:17,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 18:04:22] 2026-04-18 16:04:17,220 | INFO     | traces error code: 0
[2026-04-18 18:04:22] 2026-04-18 16:04:17,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 18:04:22] 2026-04-18 16:04:17,594 [wrapper] ==== pilot stdout END ====
[2026-04-18 18:04:22] 2026-04-18 16:04:17,679 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 18:04:22] 2026-04-18 16:04:17,794 [wrapper] pilotpid: 31260
[2026-04-18 18:04:22] 2026-04-18 16:04:17,854 [wrapper] Pilot exit status: 0
[2026-04-18 18:04:22] 2026-04-18 16:04:18,272 [wrapper] pandaids: 7093053491
[2026-04-18 18:04:22] 2026-04-18 16:04:19,387 [wrapper] cleanup supervisor_pilot 24782 31261
[2026-04-18 18:04:22] 2026-04-18 16:04:19,472 [wrapper] Test setup, not cleaning
[2026-04-18 18:04:22] 2026-04-18 16:04:19,568 [wrapper] apfmon messages muted
[2026-04-18 18:04:22] 2026-04-18 16:04:19,670 [wrapper] ==== wrapper stdout END ====
[2026-04-18 18:04:22] 2026-04-18 16:04:19,789 [wrapper] ==== wrapper stderr END ====
[2026-04-18 18:04:22]  *** Error codes and diagnostics ***
[2026-04-18 18:04:22]     "exeErrorCode": 0,
[2026-04-18 18:04:22]     "pilotErrorCode": 0,
[2026-04-18 18:04:22]  *** Listing of results directory ***
[2026-04-18 18:04:22] total 456996
[2026-04-18 18:04:22] -rwx------. 1 boinc boinc     36322 Apr 16 18:05 runpilot2-wrapper.sh
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc    644190 Apr 17 10:44 pilot3.tar.gz
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc      5094 Apr 18 05:17 queuedata.json
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc       100 Apr 18 15:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 18:04:22] -rwxr-xr-x. 1 boinc boinc      7986 Apr 18 15:07 run_atlas
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc       105 Apr 18 15:07 job.xml
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc      6306 Apr 18 15:07 init_data.xml
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc 278038041 Apr 18 15:07 EVNT.49539591._000579.pool.root.1
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc     15665 Apr 18 15:07 start_atlas.sh
[2026-04-18 18:04:22] drwxrwx--x. 2 boinc boinc        68 Apr 18 15:07 shared
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc    656932 Apr 18 15:07 input.tar.gz
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc         0 Apr 18 15:07 boinc_lockfile
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc      2605 Apr 18 15:07 pandaJob.out
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc   1512404 Apr 18 15:12 agis_ddmendpoints.agis.ALL.json
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc       413 Apr 18 15:13 workernode_map.json
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc    997973 Apr 18 15:13 agis_schedconf.cvmfs.json
[2026-04-18 18:04:22] drwx------. 5 boinc boinc      4096 Apr 18 15:13 pilot3
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc 183257009 Apr 18 18:01 HITS.49545114._014392.pool.root.1
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc       489 Apr 18 18:01 boinc_task_state.xml
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc        95 Apr 18 18:02 pilot_heartbeat.json
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc      1021 Apr 18 18:02 memory_monitor_summary.json
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc    359590 Apr 18 18:03 log.49545114._014392.job.log.tgz.1
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc      6345 Apr 18 18:03 heartbeat_new.json
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc      6236 Apr 18 18:03 heartbeat.json
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc      8192 Apr 18 18:03 boinc_mmap_file
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc        28 Apr 18 18:03 wrapper_checkpoint.txt
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc      4879 Apr 18 18:04 pilotlog.txt
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc    953185 Apr 18 18:04 log.49545114._014392.job.log.1
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc       357 Apr 18 18:04 output.list
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc       410 Apr 18 18:04 runtime_log
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc   1331200 Apr 18 18:04 result.tar.gz
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc      8438 Apr 18 18:04 runtime_log.err
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc       656 Apr 18 18:04 08c4b6d0cf84.diag
[2026-04-18 18:04:22] -rw-r--r--. 1 boinc boinc     20626 Apr 18 18:04 stderr.txt
[2026-04-18 18:04:22] HITS file was successfully produced:
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc 183257009 Apr 18 18:01 shared/HITS.pool.root.1
[2026-04-18 18:04:22]  *** Contents of shared directory: ***
[2026-04-18 18:04:22] total 452448
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc 278038041 Apr 18 15:07 ATLAS.root_0
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc     15665 Apr 18 15:07 start_atlas.sh
[2026-04-18 18:04:22] -rw-r--r--. 2 boinc boinc    656932 Apr 18 15:07 input.tar.gz
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc 183257009 Apr 18 18:01 HITS.pool.root.1
[2026-04-18 18:04:22] -rw-------. 1 boinc boinc   1331200 Apr 18 18:04 result.tar.gz
18:04:23 (27272): run_atlas exited; CPU time 53427.464020
18:04:23 (27272): called boinc_finish(0)

</stderr_txt>
]]>

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