Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:51 (3325562): wrapper (7.7.26015): starting
00:12:51 (3325562): wrapper: running run_atlas (--nthreads 8)
[2026-04-18 00:12:52] Arguments: --nthreads 8
[2026-04-18 00:12:52] Threads: 8
[2026-04-18 00:12:52] Checking for CVMFS
[2026-04-18 00:12:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-18 00:12:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-18 00:12:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-18 00:12:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-18 00:12:57] 2.13.3.0 9863 235340 180364 158568 1 85 32433167 32935937 17945 16776704 0 990346102 99.698 777768103 31934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-18 00:12:57] CVMFS is ok
[2026-04-18 00:12:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-18 00:12:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-18 00:12:57] Further information can be found at the LHC@home message board.
[2026-04-18 00:12:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-18 00:12:57] Checking for apptainer binary...
[2026-04-18 00:12:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-18 00:12:57] Running /usr/bin/apptainer --version
[2026-04-18 00:12:58] apptainer version 1.4.5-2.el9
[2026-04-18 00:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-18 00:12:59] c-5-3.aglt2.org
[2026-04-18 00:12:59] apptainer works
[2026-04-18 00:12:59] Set ATHENA_PROC_NUMBER=8
[2026-04-18 00:12:59] Set ATHENA_CORE_NUMBER=8
[2026-04-18 00:12:59] Starting ATLAS job with PandaID=7093477224
[2026-04-18 00:12:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-18 16:45:35]  *** The last 200 lines of the pilot log: ***
[2026-04-18 16:45:35] 2026-04-18 20:44:39,094 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-18 16:45:35] 2026-04-18 20:44:39,094 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-18 16:45:35] 2026-04-18 20:44:39,112 | INFO     | fitting pss+swap vs Time
[2026-04-18 16:45:35] 2026-04-18 20:44:39,114 | INFO     | sum of square deviations: 282100916893.73553
[2026-04-18 16:45:35] 2026-04-18 20:44:39,140 | INFO     | sum of deviations: 957613944164.957
[2026-04-18 16:45:35] 2026-04-18 20:44:39,140 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,140 | INFO     | mean y: 2497878.6222910215
[2026-04-18 16:45:35] 2026-04-18 20:44:39,140 | INFO     | intersect: 2497878.6222910215
[2026-04-18 16:45:35] 2026-04-18 20:44:39,142 | INFO     | chi2: 7.635172033517458
[2026-04-18 16:45:35] 2026-04-18 20:44:39,143 | INFO     | sum of square deviations: 277757052853.4437
[2026-04-18 16:45:35] 2026-04-18 20:44:39,169 | INFO     | sum of deviations: 1018040979250.0677
[2026-04-18 16:45:35] 2026-04-18 20:44:39,170 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,170 | INFO     | mean y: 2499989.6504149376
[2026-04-18 16:45:35] 2026-04-18 20:44:39,170 | INFO     | intersect: 2499989.6504149376
[2026-04-18 16:45:35] 2026-04-18 20:44:39,172 | INFO     | chi2: 6.798514989017901
[2026-04-18 16:45:35] 2026-04-18 20:44:39,172 | INFO     | current chi2=6.798514989017901 (change=10.957933113055423 %)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,172 | INFO     | right removable region: 963
[2026-04-18 16:45:35] 2026-04-18 20:44:39,173 | INFO     | sum of square deviations: 277755151184.11115
[2026-04-18 16:45:35] 2026-04-18 20:44:39,199 | INFO     | sum of deviations: 628531457350.2576
[2026-04-18 16:45:35] 2026-04-18 20:44:39,199 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,199 | INFO     | mean y: 2509424.2748962655
[2026-04-18 16:45:35] 2026-04-18 20:44:39,200 | INFO     | intersect: 2509424.2748962655
[2026-04-18 16:45:35] 2026-04-18 20:44:39,201 | INFO     | chi2: 3.4971933010609586
[2026-04-18 16:45:35] 2026-04-18 20:44:39,201 | INFO     | current chi2=3.4971933010609586 (change=54.19627369614314 %)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,203 | INFO     | sum of square deviations: 273454458140.75504
[2026-04-18 16:45:35] 2026-04-18 20:44:39,228 | INFO     | sum of deviations: 403301417865.94275
[2026-04-18 16:45:35] 2026-04-18 20:44:39,229 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,229 | INFO     | mean y: 2517409.740354536
[2026-04-18 16:45:35] 2026-04-18 20:44:39,229 | INFO     | intersect: 2517409.740354536
[2026-04-18 16:45:35] 2026-04-18 20:44:39,230 | INFO     | chi2: 1.641379744152668
[2026-04-18 16:45:35] 2026-04-18 20:44:39,231 | INFO     | current chi2=1.641379744152668 (change=53.06579868905972 %)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,232 | INFO     | sum of square deviations: 269198313067.89612
[2026-04-18 16:45:35] 2026-04-18 20:44:39,257 | INFO     | sum of deviations: 289466409730.62256
[2026-04-18 16:45:35] 2026-04-18 20:44:39,258 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,258 | INFO     | mean y: 2521486.071278826
[2026-04-18 16:45:35] 2026-04-18 20:44:39,258 | INFO     | intersect: 2521486.071278826
[2026-04-18 16:45:35] 2026-04-18 20:44:39,260 | INFO     | chi2: 1.1559878826836003
[2026-04-18 16:45:35] 2026-04-18 20:44:39,260 | INFO     | current chi2=1.1559878826836003 (change=29.57218542499087 %)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,261 | INFO     | sum of square deviations: 264986366198.45193
[2026-04-18 16:45:35] 2026-04-18 20:44:39,286 | INFO     | sum of deviations: 213883960301.08957
[2026-04-18 16:45:35] 2026-04-18 20:44:39,287 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,287 | INFO     | mean y: 2524222.2834562697
[2026-04-18 16:45:35] 2026-04-18 20:44:39,287 | INFO     | intersect: 2524222.2834562697
[2026-04-18 16:45:35] 2026-04-18 20:44:39,288 | INFO     | chi2: 0.9609519836262401
[2026-04-18 16:45:35] 2026-04-18 20:44:39,288 | INFO     | current chi2=0.9609519836262401 (change=16.87179441748028 %)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,289 | INFO     | left removable region: 20
[2026-04-18 16:45:35] 2026-04-18 20:44:39,290 | INFO     | sum of square deviations: 259992549889.66888
[2026-04-18 16:45:35] 2026-04-18 20:44:39,312 | INFO     | sum of deviations: 275527841047.05
[2026-04-18 16:45:35] 2026-04-18 20:44:39,313 | INFO     | mean x (centered): 0.0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,313 | INFO     | mean y: 2526467.7030752916
[2026-04-18 16:45:35] 2026-04-18 20:44:39,313 | INFO     | intersect: 2526467.7030752916
[2026-04-18 16:45:35] 2026-04-18 20:44:39,314 | INFO     | chi2: 0.10315100726283893
[2026-04-18 16:45:35] 2026-04-18 20:44:39,315 | INFO     | current memory leak: 1.06 B/s (using 943 data points, chi2=0.10)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,316 | INFO     | could have reported an average CPU frequency of 2600 MHz (36 samples)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,316 | INFO     | ..............................
[2026-04-18 16:45:35] 2026-04-18 20:44:39,316 | INFO     | . Timing measurements:
[2026-04-18 16:45:35] 2026-04-18 20:44:39,316 | INFO     | . get job = 1 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . initial setup = 68 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . payload setup = 123 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . stage-in = 1 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . payload execution = 59136 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . stage-out = 2 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | . log creation = 0 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,317 | INFO     | ..............................
[2026-04-18 16:45:35] 2026-04-18 20:44:39,425 | INFO     | 
[2026-04-18 16:45:35] 2026-04-18 20:44:39,425 | INFO     | job summary report
[2026-04-18 16:45:35] 2026-04-18 20:44:39,425 | INFO     | --------------------------------------------------
[2026-04-18 16:45:35] 2026-04-18 20:44:39,425 | INFO     | PanDA job id: 7093477224
[2026-04-18 16:45:35] 2026-04-18 20:44:39,426 | INFO     | task id: 49545114
[2026-04-18 16:45:35] 2026-04-18 20:44:39,427 | INFO     | errors: (none)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,427 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-18 16:45:35] 2026-04-18 20:44:39,427 | INFO     | pilot state: finished 
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | transexitcode: 0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | exeerrorcode: 0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | exeerrordiag: 
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | exitcode: 0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | exitmsg: OK
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | cpuconsumptiontime: 51733 s
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | nevents: 400
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | neventsw: 0
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | pid: 3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | pgrp: 3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:39,428 | INFO     | corecount: 8
[2026-04-18 16:45:35] 2026-04-18 20:44:39,429 | INFO     | event service: False
[2026-04-18 16:45:35] 2026-04-18 20:44:39,429 | INFO     | sizes: {0: 2281022, 1: 2281623, 2: 2281707, 3: 2281735, 4: 2281763, 6: 2281763, 9: 2281763, 11: 2283748, 24: 2283748, 59263: 2333903, 59266: 2342901, 59267: 234323
[2026-04-18 16:45:35] 2026-04-18 20:44:39,429 | INFO     | --------------------------------------------------
[2026-04-18 16:45:35] 2026-04-18 20:44:39,429 | INFO     | 
[2026-04-18 16:45:35] 2026-04-18 20:44:39,429 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-04-18 16:45:35] 2026-04-18 20:44:39,448 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,450 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | job 7093477224 has completed (purged errors)
[2026-04-18 16:45:35] 2026-04-18 20:44:39,451 | INFO     | overall cleanup function is called
[2026-04-18 16:45:35] 2026-04-18 20:44:40,463 | INFO     | --- collectZombieJob: --- 10, [3342906]
[2026-04-18 16:45:35] 2026-04-18 20:44:40,463 | INFO     | zombie collector waiting for pid 3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:40,467 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-18 16:45:35] 2026-04-18 20:44:40,467 | INFO     | collected zombie processes
[2026-04-18 16:45:35] 2026-04-18 20:44:40,467 | INFO     | will attempt to kill all subprocesses of pid=3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:41,156 | INFO     | process IDs to be killed: [3342906] (in reverse order)
[2026-04-18 16:45:35] 2026-04-18 20:44:41,344 | WARNING  | found no corresponding commands to process id(s)
[2026-04-18 16:45:35] 2026-04-18 20:44:41,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-18 16:45:35] 2026-04-18 20:44:41,362 | INFO     | did not find any defunct processes belonging to 3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:41,377 | INFO     | did not find any defunct processes belonging to 3342906
[2026-04-18 16:45:35] 2026-04-18 20:44:41,377 | INFO     | Ready for new job
[2026-04-18 16:45:35] 2026-04-18 20:44:41,381 | INFO     | **************************************
[2026-04-18 16:45:35] 2026-04-18 20:44:41,381 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-18 16:45:35] 2026-04-18 20:44:41,381 | INFO     | **************************************
[2026-04-18 16:45:35] 2026-04-18 20:44:41,381 | INFO     | 
[2026-04-18 16:45:35] 2026-04-18 20:44:41,384 | INFO     | architecture information:
[2026-04-18 16:45:35] 2026-04-18 20:44:41,385 | INFO     | executing command: cat /etc/os-release
[2026-04-18 16:45:35] 2026-04-18 20:44:41,405 | INFO     | cat /etc/os-release:
[2026-04-18 16:45:35] NAME="CentOS Linux"
[2026-04-18 16:45:35] VERSION="7 (Core)"
[2026-04-18 16:45:35] ID="centos"
[2026-04-18 16:45:35] ID_LIKE="rhel fedora"
[2026-04-18 16:45:35] VERSION_ID="7"
[2026-04-18 16:45:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-18 16:45:35] ANSI_COLOR="0;31"
[2026-04-18 16:45:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-18 16:45:35] HOME_URL="https://www.centos.org/"
[2026-04-18 16:45:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-18 16:45:35] 
[2026-04-18 16:45:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-18 16:45:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-18 16:45:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-18 16:45:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-18 16:45:35] 
[2026-04-18 16:45:35] 2026-04-18 20:44:41,406 | INFO     | **************************************
[2026-04-18 16:45:35] 2026-04-18 20:44:41,909 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-04-18 16:45:35] 2026-04-18 20:44:41,989 | INFO     | sufficient remaining disk space (76379324416 B)
[2026-04-18 16:45:35] 2026-04-18 20:44:41,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-18 16:45:35] 2026-04-18 20:44:41,990 | INFO     | current server update state: UPDATING_FINAL
[2026-04-18 16:45:35] 2026-04-18 20:44:41,990 | INFO     | update_server=False
[2026-04-18 16:45:35] 2026-04-18 20:44:41,990 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-18 16:45:35] 2026-04-18 20:44:42,221 | INFO     | all job control threads have been joined
[2026-04-18 16:45:35] 2026-04-18 20:44:42,276 | INFO     | all data control threads have been joined
[2026-04-18 16:45:35] 2026-04-18 20:44:42,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-18 16:45:35] 2026-04-18 20:44:42,482 | INFO     | aborting loop
[2026-04-18 16:45:35] 2026-04-18 20:44:42,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-18 16:45:35] 2026-04-18 20:44:42,996 | INFO     | [job] retrieve thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:42,999 | INFO     | all payload control threads have been joined
[2026-04-18 16:45:35] 2026-04-18 20:44:43,083 | INFO     | [payload] execute_payloads thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:43,227 | INFO     | [job] control thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:43,282 | INFO     | [data] control thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:43,488 | INFO     | [job] job monitor thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:43,666 | INFO     | [job] validate thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:43,686 | INFO     | [payload] validate_post thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,005 | INFO     | [payload] control thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-18 16:45:35] 2026-04-18 20:44:44,457 | INFO     | [job] create_data_payload thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-18 16:45:35] 2026-04-18 20:44:44,469 | INFO     | [payload] validate_pre thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,469 | INFO     | [data] copytool_in thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,517 | INFO     | [payload] failed_post thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:44,901 | INFO     | [data] copytool_out thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:45,445 | INFO     | [job] queue monitor thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:48,473 | INFO     | [data] queue_monitor thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:44:52,066 | INFO     | job.realtimelogging is not enabled
[2026-04-18 16:45:35] 2026-04-18 20:44:53,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-18 16:45:35] 2026-04-18 20:45:11,721 | INFO     | PID=3333499 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-18 16:45:35] 2026-04-18 20:45:11,721 | INFO     | .. there are 22 such processes running
[2026-04-18 16:45:35] 2026-04-18 20:45:11,721 | INFO     | found 0 job(s) in 20 queues
[2026-04-18 16:45:35] 2026-04-18 20:45:11,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-18 16:45:35] 2026-04-18 20:45:11,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-18 16:45:35] 2026-04-18 20:45:27,680 [wrapper] supervise_pilot (15 min periods counter: 67)
[2026-04-18 16:45:35] 2026-04-18 20:45:28,537 | INFO     | [monitor] cgroup control has ended
[2026-04-18 16:45:35] 2026-04-18 20:45:30,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220746381120)>', '<ExcThread(monitor, started 140219768612608)>']
[2026-04-18 16:45:35] 2026-04-18 20:45:30,831 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-18 16:45:35] 2026-04-18 20:45:30,832 | INFO     | [monitor] control thread has ended
[2026-04-18 16:45:35] 2026-04-18 20:45:35,086 | INFO     | all workflow threads have been joined
[2026-04-18 16:45:35] 2026-04-18 20:45:35,086 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-18 16:45:35] 2026-04-18 20:45:35,087 | INFO     | traces error code: 0
[2026-04-18 16:45:35] 2026-04-18 20:45:35,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-18 16:45:35] 2026-04-18 20:45:35,273 [wrapper] ==== pilot stdout END ====
[2026-04-18 16:45:35] 2026-04-18 20:45:35,275 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-18 16:45:35] 2026-04-18 20:45:35,278 [wrapper] pilotpid: 3333499
[2026-04-18 16:45:35] 2026-04-18 20:45:35,281 [wrapper] Pilot exit status: 0
[2026-04-18 16:45:35] 2026-04-18 20:45:35,294 [wrapper] pandaids: 7093477224
[2026-04-18 16:45:35] 2026-04-18 20:45:35,363 [wrapper] cleanup supervisor_pilot 2587539 3333500
[2026-04-18 16:45:35] 2026-04-18 20:45:35,367 [wrapper] Test setup, not cleaning
[2026-04-18 16:45:35] 2026-04-18 20:45:35,370 [wrapper] apfmon messages muted
[2026-04-18 16:45:35] 2026-04-18 20:45:35,374 [wrapper] ==== wrapper stdout END ====
[2026-04-18 16:45:35] 2026-04-18 20:45:35,377 [wrapper] ==== wrapper stderr END ====
[2026-04-18 16:45:35]  *** Error codes and diagnostics ***
[2026-04-18 16:45:35]     "exeErrorCode": 0,
[2026-04-18 16:45:35]     "pilotErrorCode": 0,
[2026-04-18 16:45:35]  *** Listing of results directory ***
[2026-04-18 16:45:35] total 470516
[2026-04-18 16:45:35] -rwx------. 1 boincer umatlas     36322 Apr 16 12:07 runpilot2-wrapper.sh
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas    644190 Apr 17 23:05 pilot3.tar.gz
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas      5094 Apr 17 23:07 queuedata.json
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas       100 Apr 18 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-18 16:45:35] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 18 00:12 run_atlas
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas       105 Apr 18 00:12 job.xml
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas 281279754 Apr 18 00:12 EVNT.49539591._000637.pool.root.1
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas     15665 Apr 18 00:12 start_atlas.sh
[2026-04-18 16:45:35] drwxrwx--x. 2 boincer umatlas      4096 Apr 18 00:12 shared
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas    656937 Apr 18 00:12 input.tar.gz
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas         0 Apr 18 00:12 boinc_lockfile
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas      2605 Apr 18 00:12 pandaJob.out
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas        57 Apr 18 00:13 setup.sh.local
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas       439 Apr 18 00:16 workernode_map.json
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas    997909 Apr 18 00:16 agis_schedconf.cvmfs.json
[2026-04-18 16:45:35] drwx------. 5 boincer umatlas      4096 Apr 18 00:16 pilot3
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas      6620 Apr 18 16:39 init_data.xml
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas 186831620 Apr 18 16:43 HITS.49545114._015917.pool.root.1
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas       488 Apr 18 16:44 boinc_task_state.xml
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas        95 Apr 18 16:44 pilot_heartbeat.json
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas      1045 Apr 18 16:44 memory_monitor_summary.json
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas   1512404 Apr 18 16:44 agis_ddmendpoints.agis.ALL.json
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas    732761 Apr 18 16:44 log.49545114._015917.job.log.tgz.1
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas      6408 Apr 18 16:44 heartbeat_new.json
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas      6299 Apr 18 16:44 heartbeat.json
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas        27 Apr 18 16:45 wrapper_checkpoint.txt
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas      8192 Apr 18 16:45 boinc_mmap_file
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas      4891 Apr 18 16:45 pilotlog.txt
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas   4086782 Apr 18 16:45 log.49545114._015917.job.log.1
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas       357 Apr 18 16:45 output.list
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas       410 Apr 18 16:45 runtime_log
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas   4833280 Apr 18 16:45 result.tar.gz
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas      8949 Apr 18 16:45 runtime_log.err
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas       654 Apr 18 16:45 09494faf6d19.diag
[2026-04-18 16:45:35] -rw-r--r--. 1 boincer umatlas     20891 Apr 18 16:45 stderr.txt
[2026-04-18 16:45:35] HITS file was successfully produced:
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas 186831620 Apr 18 16:43 shared/HITS.pool.root.1
[2026-04-18 16:45:35]  *** Contents of shared directory: ***
[2026-04-18 16:45:35] total 462532
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas 281279754 Apr 18 00:12 ATLAS.root_0
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas     15665 Apr 18 00:12 start_atlas.sh
[2026-04-18 16:45:35] -rw-r--r--. 2 boincer umatlas    656937 Apr 18 00:12 input.tar.gz
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas 186831620 Apr 18 16:43 HITS.pool.root.1
[2026-04-18 16:45:35] -rw-------. 1 boincer umatlas   4833280 Apr 18 16:45 result.tar.gz
16:45:37 (3325562): run_atlas exited; CPU time 53839.841624
16:45:37 (3325562): called boinc_finish(0)

</stderr_txt>
]]>

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