Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:20 (31579): wrapper (7.7.26015): starting
05:29:20 (31579): wrapper: running run_atlas (--nthreads 8)
[2026-04-17 05:29:20] Arguments: --nthreads 8
[2026-04-17 05:29:20] Threads: 8
[2026-04-17 05:29:20] Checking for CVMFS
[2026-04-17 05:29:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-17 05:29:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-17 05:29:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-17 05:29:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-17 05:29:25] 2.11.2.0 30908 2065 72188 158552 0 94 20812089 25165824 885 130560 0 577721 99.951 216810 6976 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-17 05:29:25] CVMFS is ok
[2026-04-17 05:29:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-17 05:29:25] Checking for apptainer binary...
[2026-04-17 05:29:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-17 05:29:25] Running /usr/bin/apptainer --version
[2026-04-17 05:29:25] apptainer version 1.3.2-1.el7
[2026-04-17 05:29:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-17 05:29:34] cg-vwn435.simple-grid.lan
[2026-04-17 05:29:34] apptainer works
[2026-04-17 05:29:35] Set ATHENA_PROC_NUMBER=8
[2026-04-17 05:29:35] Set ATHENA_CORE_NUMBER=8
[2026-04-17 05:29:35] Starting ATLAS job with PandaID=7089697820
[2026-04-17 05:29:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-17 09:46:03]  *** The last 200 lines of the pilot log: ***
[2026-04-17 09:46:03] 2026-04-17 07:45:11,020 | INFO     | log transfer has been attempted: DONE
[2026-04-17 09:46:03] 2026-04-17 07:45:11,020 | INFO     | job 7089697820 has finished - writing final server update
[2026-04-17 09:46:03] 2026-04-17 07:45:11,021 | INFO     | total number of processed events: 400 (read)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,023 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7089697820/memory_monitor_summary.json (trf name=prmon)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,023 | INFO     | extracted standard info from prmon json
[2026-04-17 09:46:03] 2026-04-17 07:45:11,023 | INFO     | extracted standard memory fields from prmon json
[2026-04-17 09:46:03] 2026-04-17 07:45:11,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-17 09:46:03] 2026-04-17 07:45:11,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-17 09:46:03] 2026-04-17 07:45:11,029 | INFO     | fitting pss+swap vs Time
[2026-04-17 09:46:03] 2026-04-17 07:45:11,029 | INFO     | sum of square deviations: 4127772278.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,031 | INFO     | sum of deviations: 119912192283.99994
[2026-04-17 09:46:03] 2026-04-17 07:45:11,032 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,032 | INFO     | mean y: 2416672.35443038
[2026-04-17 09:46:03] 2026-04-17 07:45:11,032 | INFO     | intersect: 2416672.35443038
[2026-04-17 09:46:03] 2026-04-17 07:45:11,036 | INFO     | chi2: 9.055357841299028
[2026-04-17 09:46:03] 2026-04-17 07:45:11,036 | INFO     | sum of square deviations: 3871990738.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,038 | INFO     | sum of deviations: 133339184683.5
[2026-04-17 09:46:03] 2026-04-17 07:45:11,038 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,038 | INFO     | mean y: 2424512.478448276
[2026-04-17 09:46:03] 2026-04-17 07:45:11,038 | INFO     | intersect: 2424512.478448276
[2026-04-17 09:46:03] 2026-04-17 07:45:11,039 | INFO     | chi2: 8.326626565156193
[2026-04-17 09:46:03] 2026-04-17 07:45:11,039 | INFO     | current chi2=8.326626565156193 (change=8.047514950975092 %)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,039 | INFO     | right removable region: 231
[2026-04-17 09:46:03] 2026-04-17 07:45:11,040 | INFO     | sum of square deviations: 3871990738.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,042 | INFO     | sum of deviations: 35483141758.500015
[2026-04-17 09:46:03] 2026-04-17 07:45:11,042 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,042 | INFO     | mean y: 2466990.021551724
[2026-04-17 09:46:03] 2026-04-17 07:45:11,042 | INFO     | intersect: 2466990.021551724
[2026-04-17 09:46:03] 2026-04-17 07:45:11,043 | INFO     | chi2: 3.6570339853143454
[2026-04-17 09:46:03] 2026-04-17 07:45:11,043 | INFO     | current chi2=3.6570339853143454 (change=59.61469387067613 %)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,043 | INFO     | sum of square deviations: 3627000098.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,045 | INFO     | sum of deviations: -25242792287.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,045 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,045 | INFO     | mean y: 2504718.8149779737
[2026-04-17 09:46:03] 2026-04-17 07:45:11,045 | INFO     | intersect: 2504718.8149779737
[2026-04-17 09:46:03] 2026-04-17 07:45:11,046 | INFO     | chi2: 1.0415594558236274
[2026-04-17 09:46:03] 2026-04-17 07:45:11,046 | INFO     | current chi2=1.0415594558236274 (change=71.51901076100886 %)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,046 | INFO     | sum of square deviations: 3392567795.5
[2026-04-17 09:46:03] 2026-04-17 07:45:11,048 | INFO     | sum of deviations: -31242055606.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,048 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,048 | INFO     | mean y: 2508555.5675675673
[2026-04-17 09:46:03] 2026-04-17 07:45:11,048 | INFO     | intersect: 2508555.5675675673
[2026-04-17 09:46:03] 2026-04-17 07:45:11,049 | INFO     | chi2: 0.9619206056298218
[2026-04-17 09:46:03] 2026-04-17 07:45:11,049 | INFO     | current chi2=0.9619206056298218 (change=7.646116575345192 %)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,049 | INFO     | left removable region: 15
[2026-04-17 09:46:03] 2026-04-17 07:45:11,049 | INFO     | sum of square deviations: 3124858590.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,051 | INFO     | sum of deviations: -15478266575.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,051 | INFO     | mean x (centered): 0.0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,051 | INFO     | mean y: 2519095.5
[2026-04-17 09:46:03] 2026-04-17 07:45:11,051 | INFO     | intersect: 2519095.5
[2026-04-17 09:46:03] 2026-04-17 07:45:11,052 | INFO     | chi2: 0.12151588588894152
[2026-04-17 09:46:03] 2026-04-17 07:45:11,052 | INFO     | current memory leak: -4.95 B/s (using 216 data points, chi2=0.12)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,052 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,052 | INFO     | ..............................
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . Timing measurements:
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . get job = 0 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . initial setup = 115 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . payload setup = 302 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . stage-in = 0 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . payload execution = 14600 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . stage-out = 2 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,053 | INFO     | . log creation = 0 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,058 | INFO     | ..............................
[2026-04-17 09:46:03] 2026-04-17 07:45:11,347 | INFO     | 
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | job summary report
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | --------------------------------------------------
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | PanDA job id: 7089697820
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | task id: 49263200
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | errors: (none)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | pilot state: finished 
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | transexitcode: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | exeerrorcode: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | exeerrordiag: 
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | exitcode: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,348 | INFO     | exitmsg: OK
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | cpuconsumptiontime: 52489 s
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | nevents: 400
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | neventsw: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | pid: 7728
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | pgrp: 7728
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | corecount: 8
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | event service: False
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | sizes: {0: 2279684, 1: 2254296, 2: 2281597, 12: 2281597, 14906: 2312465, 14910: 2321463, 14911: 2321647, 14912: 2321841}
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | --------------------------------------------------
[2026-04-17 09:46:03] 2026-04-17 07:45:11,349 | INFO     | 
[2026-04-17 09:46:03] 2026-04-17 07:45:11,350 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | job 7089697820 has completed (purged errors)
[2026-04-17 09:46:03] 2026-04-17 07:45:11,812 | INFO     | overall cleanup function is called
[2026-04-17 09:46:03] 2026-04-17 07:45:12,820 | INFO     | --- collectZombieJob: --- 10, [7728]
[2026-04-17 09:46:03] 2026-04-17 07:45:12,821 | INFO     | zombie collector waiting for pid 7728
[2026-04-17 09:46:03] 2026-04-17 07:45:12,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-17 09:46:03] 2026-04-17 07:45:12,821 | INFO     | collected zombie processes
[2026-04-17 09:46:03] 2026-04-17 07:45:12,821 | INFO     | will attempt to kill all subprocesses of pid=7728
[2026-04-17 09:46:03] 2026-04-17 07:45:12,906 | INFO     | process IDs to be killed: [7728] (in reverse order)
[2026-04-17 09:46:03] 2026-04-17 07:45:13,772 | WARNING  | found no corresponding commands to process id(s)
[2026-04-17 09:46:03] 2026-04-17 07:45:13,772 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-17 09:46:03] 2026-04-17 07:45:13,774 | INFO     | did not find any defunct processes belonging to 7728
[2026-04-17 09:46:03] 2026-04-17 07:45:13,776 | INFO     | did not find any defunct processes belonging to 7728
[2026-04-17 09:46:03] 2026-04-17 07:45:13,777 | INFO     | Ready for new job
[2026-04-17 09:46:03] 2026-04-17 07:45:13,779 | INFO     | **************************************
[2026-04-17 09:46:03] 2026-04-17 07:45:13,780 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-17 09:46:03] 2026-04-17 07:45:13,780 | INFO     | **************************************
[2026-04-17 09:46:03] 2026-04-17 07:45:13,780 | INFO     | 
[2026-04-17 09:46:03] 2026-04-17 07:45:13,780 | INFO     | pilot is running in a VM
[2026-04-17 09:46:03] 2026-04-17 07:45:13,780 | INFO     | architecture information:
[2026-04-17 09:46:03] 2026-04-17 07:45:13,788 | INFO     | executing command: cat /etc/os-release
[2026-04-17 09:46:03] 2026-04-17 07:45:14,092 | INFO     | cat /etc/os-release:
[2026-04-17 09:46:03] NAME="CentOS Linux"
[2026-04-17 09:46:03] VERSION="7 (Core)"
[2026-04-17 09:46:03] ID="centos"
[2026-04-17 09:46:03] ID_LIKE="rhel fedora"
[2026-04-17 09:46:03] VERSION_ID="7"
[2026-04-17 09:46:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-17 09:46:03] ANSI_COLOR="0;31"
[2026-04-17 09:46:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-17 09:46:03] HOME_URL="https://www.centos.org/"
[2026-04-17 09:46:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-17 09:46:03] 
[2026-04-17 09:46:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-17 09:46:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-17 09:46:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-17 09:46:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-17 09:46:03] 
[2026-04-17 09:46:03] 2026-04-17 07:45:14,092 | INFO     | **************************************
[2026-04-17 09:46:03] 2026-04-17 07:45:14,596 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-04-17 09:46:03] 2026-04-17 07:45:14,804 | INFO     | sufficient remaining disk space (497079549952 B)
[2026-04-17 09:46:03] 2026-04-17 07:45:14,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-17 09:46:03] 2026-04-17 07:45:14,804 | INFO     | current server update state: UPDATING_FINAL
[2026-04-17 09:46:03] 2026-04-17 07:45:14,804 | INFO     | update_server=False
[2026-04-17 09:46:03] 2026-04-17 07:45:14,804 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-17 09:46:03] 2026-04-17 07:45:14,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-17 09:46:03] 2026-04-17 07:45:14,909 | INFO     | all payload control threads have been joined
[2026-04-17 09:46:03] 2026-04-17 07:45:14,943 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-17 09:46:03] 2026-04-17 07:45:14,943 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-17 09:46:03] 2026-04-17 07:45:14,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-17 09:46:03] 2026-04-17 07:45:14,944 | INFO     | will abort loop
[2026-04-17 09:46:03] 2026-04-17 07:45:15,141 | INFO     | all data control threads have been joined
[2026-04-17 09:46:03] 2026-04-17 07:45:15,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-17 09:46:03] 2026-04-17 07:45:15,810 | INFO     | [job] retrieve thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:15,915 | INFO     | [payload] control thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:15,949 | INFO     | [job] job monitor thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:15,996 | INFO     | [data] copytool_in thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:16,089 | INFO     | [job] validate thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:16,147 | INFO     | [data] control thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:16,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-17 09:46:03] 2026-04-17 07:45:16,438 | INFO     | all job control threads have been joined
[2026-04-17 09:46:03] 2026-04-17 07:45:16,490 | INFO     | [payload] execute_payloads thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:16,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:16,812 | INFO     | [data] copytool_out thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,189 | INFO     | [job] queue monitor thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,201 | INFO     | [payload] validate_pre thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,240 | INFO     | [job] create_data_payload thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,244 | INFO     | [payload] failed_post thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,366 | INFO     | [payload] validate_post thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:17,444 | INFO     | [job] control thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:19,593 | INFO     | [data] queue_monitor thread has finished
[2026-04-17 09:46:03] 2026-04-17 07:45:43,988 | INFO     | PID=3254 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-17 09:46:03] 2026-04-17 07:45:43,988 | INFO     | .. there are 2 such processes running
[2026-04-17 09:46:03] 2026-04-17 07:45:43,989 | INFO     | found 0 job(s) in 20 queues
[2026-04-17 09:46:03] 2026-04-17 07:45:43,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-17 09:46:03] 2026-04-17 07:45:43,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-17 09:46:03] 2026-04-17 07:45:51,476 | INFO     | [monitor] cgroup control has ended
[2026-04-17 09:46:03] 2026-04-17 07:45:53,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605264623424)>', '<ExcThread(monitor, started 140604579231488)>']
[2026-04-17 09:46:03] 2026-04-17 07:45:54,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-17 09:46:03] 2026-04-17 07:45:54,046 | INFO     | [monitor] control thread has ended
[2026-04-17 09:46:03] 2026-04-17 07:45:58,156 | INFO     | all workflow threads have been joined
[2026-04-17 09:46:03] 2026-04-17 07:45:58,157 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-17 09:46:03] 2026-04-17 07:45:58,157 | INFO     | traces error code: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:58,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-17 09:46:03] 2026-04-17 07:45:58,610 [wrapper] ==== pilot stdout END ====
[2026-04-17 09:46:03] 2026-04-17 07:45:58,715 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-17 09:46:03] 2026-04-17 07:45:58,817 [wrapper] pilotpid: 3254
[2026-04-17 09:46:03] 2026-04-17 07:45:58,906 [wrapper] Pilot exit status: 0
[2026-04-17 09:46:03] 2026-04-17 07:45:59,446 [wrapper] pandaids: 7089697820
[2026-04-17 09:46:03] 2026-04-17 07:46:00,326 [wrapper] cleanup supervisor_pilot 14749 3255
[2026-04-17 09:46:03] 2026-04-17 07:46:00,437 [wrapper] Test setup, not cleaning
[2026-04-17 09:46:03] 2026-04-17 07:46:00,569 [wrapper] apfmon messages muted
[2026-04-17 09:46:03] 2026-04-17 07:46:00,676 [wrapper] ==== wrapper stdout END ====
[2026-04-17 09:46:03] 2026-04-17 07:46:00,780 [wrapper] ==== wrapper stderr END ====
[2026-04-17 09:46:03]  *** Error codes and diagnostics ***
[2026-04-17 09:46:03]     "exeErrorCode": 0,
[2026-04-17 09:46:03]     "pilotErrorCode": 0,
[2026-04-17 09:46:04]  *** Listing of results directory ***
[2026-04-17 09:46:04] total 419852
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc    644190 Apr 13 20:01 pilot3.tar.gz
[2026-04-17 09:46:04] -rwx------. 1 boinc boinc     36322 Apr 13 20:02 runpilot2-wrapper.sh
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc      5094 Apr 13 20:04 queuedata.json
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc       100 Apr 17 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-17 09:46:04] -rwxr-xr-x. 1 boinc boinc      7986 Apr 17 05:29 run_atlas
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc       105 Apr 17 05:29 job.xml
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc      6306 Apr 17 05:29 init_data.xml
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc 224485005 Apr 17 05:29 EVNT.49263198._001892.pool.root.1
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc     15665 Apr 17 05:29 start_atlas.sh
[2026-04-17 09:46:04] drwxrwx--x. 2 boinc boinc        68 Apr 17 05:29 shared
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc    656926 Apr 17 05:29 input.tar.gz
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc         0 Apr 17 05:29 boinc_lockfile
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc      2576 Apr 17 05:29 pandaJob.out
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc       415 Apr 17 05:36 workernode_map.json
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc    997821 Apr 17 05:36 agis_schedconf.cvmfs.json
[2026-04-17 09:46:04] drwx------. 5 boinc boinc      4096 Apr 17 05:36 pilot3
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc 197867094 Apr 17 09:43 HITS.49263200._065723.pool.root.1
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc       489 Apr 17 09:44 boinc_task_state.xml
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc      1010 Apr 17 09:45 memory_monitor_summary.json
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc   1511633 Apr 17 09:45 agis_ddmendpoints.agis.ALL.json
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc    390980 Apr 17 09:45 log.49263200._065723.job.log.tgz.1
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc      6335 Apr 17 09:45 heartbeat_new.json
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc      6226 Apr 17 09:45 heartbeat.json
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc        95 Apr 17 09:45 pilot_heartbeat.json
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc      8192 Apr 17 09:45 boinc_mmap_file
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc        28 Apr 17 09:45 wrapper_checkpoint.txt
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc      5064 Apr 17 09:45 pilotlog.txt
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc   1376654 Apr 17 09:46 log.49263200._065723.job.log.1
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc       357 Apr 17 09:46 output.list
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc       410 Apr 17 09:46 runtime_log
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc   1781760 Apr 17 09:46 result.tar.gz
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc      8438 Apr 17 09:46 runtime_log.err
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc       655 Apr 17 09:46 2f9e6ba48313.diag
[2026-04-17 09:46:04] -rw-r--r--. 1 boinc boinc     20587 Apr 17 09:46 stderr.txt
[2026-04-17 09:46:04] HITS file was successfully produced:
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc 197867094 Apr 17 09:43 shared/HITS.pool.root.1
[2026-04-17 09:46:04]  *** Contents of shared directory: ***
[2026-04-17 09:46:04] total 414856
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc 224485005 Apr 17 05:29 ATLAS.root_0
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc     15665 Apr 17 05:29 start_atlas.sh
[2026-04-17 09:46:04] -rw-r--r--. 2 boinc boinc    656926 Apr 17 05:29 input.tar.gz
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc 197867094 Apr 17 09:43 HITS.pool.root.1
[2026-04-17 09:46:04] -rw-------. 1 boinc boinc   1781760 Apr 17 09:46 result.tar.gz
09:46:05 (31579): run_atlas exited; CPU time 52639.580336
09:46:05 (31579): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN