Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
14:42:52 (401628): wrapper (7.7.26015): starting
14:42:52 (401628): wrapper: running run_atlas (--nthreads 4)
[2026-04-16 14:42:52] Arguments: --nthreads 4
[2026-04-16 14:42:52] Threads: 4
[2026-04-16 14:42:52] Checking for CVMFS
[2026-04-16 14:42:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-16 14:42:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-16 14:42:54] Running cvmfs_config stat atlas.cern.ch
[2026-04-16 14:42:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-16 14:42:54] 2.13.3.0 335433 273 45100 158538 2 11 15223309 102400001 2748 130560 0 219783 99.982 13397 1414 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-16 14:42:54] CVMFS is ok
[2026-04-16 14:42:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-16 14:42:54] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-16 14:42:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-16 14:42:54] Further information can be found at the LHC@home message board.
[2026-04-16 14:42:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-16 14:42:54] Checking for apptainer binary...
[2026-04-16 14:42:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-16 14:42:54] Running /usr/bin/apptainer --version
[2026-04-16 14:42:54] apptainer version 1.4.5
[2026-04-16 14:42:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-16 14:42:54] T7810-Ubuntu
[2026-04-16 14:42:54] apptainer works
[2026-04-16 14:42:54] Set ATHENA_PROC_NUMBER=4
[2026-04-16 14:42:54] Set ATHENA_CORE_NUMBER=4
[2026-04-16 14:42:54] Starting ATLAS job with PandaID=7071901126
[2026-04-16 14:42:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC_31420/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-16 17:35:41]  *** The last 200 lines of the pilot log: ***
[2026-04-16 17:35:41] 2026-04-16 21:34:53,029 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,029 | INFO     | mean y: 2380485.769230769
[2026-04-16 17:35:41] 2026-04-16 21:34:53,029 | INFO     | intersect: 2380485.769230769
[2026-04-16 17:35:41] 2026-04-16 21:34:53,030 | INFO     | chi2: 2.451888203831813
[2026-04-16 17:35:41] 2026-04-16 21:34:53,030 | INFO     | sum of square deviations: 1367709365.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,030 | INFO     | sum of deviations: -15216929490.5
[2026-04-16 17:35:41] 2026-04-16 21:34:53,030 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,030 | INFO     | mean y: 2392896.3353658537
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | intersect: 2392896.3353658537
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | chi2: 1.802129341336673
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | current chi2=1.802129341336673 (change=26.50034620174347 %)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | sum of square deviations: 1246386160.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | sum of deviations: -14405951173.999994
[2026-04-16 17:35:41] 2026-04-16 21:34:53,031 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | mean y: 2393915.962264151
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | intersect: 2393915.962264151
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | chi2: 1.7997916935578753
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | current chi2=1.7997916935578753 (change=0.1297158713959937 %)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | right removable region: 158
[2026-04-16 17:35:41] 2026-04-16 21:34:53,032 | INFO     | sum of square deviations: 1367709365.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | sum of deviations: -48630878415.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | mean y: 2406884.487804878
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | intersect: 2406884.487804878
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | chi2: 0.9699453551415845
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | current chi2=0.9699453551415845 (change=60.440881699836346 %)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,033 | INFO     | sum of square deviations: 1246386160.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | sum of deviations: -42580056310.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | mean y: 2399252.044025157
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | intersect: 2399252.044025157
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | chi2: 0.9611026348850371
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | current chi2=0.9611026348850371 (change=0.9116720039611546 %)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | left removable region: 10
[2026-04-16 17:35:41] 2026-04-16 21:34:53,034 | INFO     | sum of square deviations: 1005179777.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | sum of deviations: -30535123647.5
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | mean x (centered): 0.0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | mean y: 2415212.3445945946
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | intersect: 2415212.3445945946
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | chi2: 0.2766019348935279
[2026-04-16 17:35:41] 2026-04-16 21:34:53,035 | INFO     | current memory leak: -30.38 B/s (using 148 data points, chi2=0.28)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | could have reported an average CPU frequency of 2738 MHz (9 samples)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | ..............................
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . Timing measurements:
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . get job = 0 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . initial setup = 9 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . payload setup = 14 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . stage-in = 0 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . payload execution = 10264 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . stage-out = 0 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | . log creation = 0 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,036 | INFO     | ..............................
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | 
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | job summary report
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | --------------------------------------------------
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | PanDA job id: 7071901126
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | task id: 49263200
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | errors: (none)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | pilot state: finished 
[2026-04-16 17:35:41] 2026-04-16 21:34:53,126 | INFO     | transexitcode: 0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | exeerrorcode: 0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | exeerrordiag: 
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | exitcode: 0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | exitmsg: OK
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | cpuconsumptiontime: 39829 s
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | nevents: 400
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | neventsw: 0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | pid: 410792
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | pgrp: 410792
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | corecount: 4
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | event service: False
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | sizes: {0: 2281555, 11: 2281555, 10279: 2310148, 10280: 2310147, 10282: 2319499}
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | --------------------------------------------------
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | 
[2026-04-16 17:35:41] 2026-04-16 21:34:53,127 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC_31420/slots/0
[2026-04-16 17:35:41] 2026-04-16 21:34:53,141 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,141 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,144 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-16 17:35:41] 2026-04-16 21:34:53,144 | INFO     | job 7071901126 has completed (purged errors)
[2026-04-16 17:35:41] 2026-04-16 21:34:53,144 | INFO     | overall cleanup function is called
[2026-04-16 17:35:41] 2026-04-16 21:34:54,151 | INFO     | --- collectZombieJob: --- 10, [410792]
[2026-04-16 17:35:41] 2026-04-16 21:34:54,152 | INFO     | zombie collector waiting for pid 410792
[2026-04-16 17:35:41] 2026-04-16 21:34:54,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-16 17:35:41] 2026-04-16 21:34:54,152 | INFO     | collected zombie processes
[2026-04-16 17:35:41] 2026-04-16 21:34:54,152 | INFO     | will attempt to kill all subprocesses of pid=410792
[2026-04-16 17:35:41] 2026-04-16 21:34:54,486 | INFO     | process IDs to be killed: [410792] (in reverse order)
[2026-04-16 17:35:41] 2026-04-16 21:34:54,590 | WARNING  | found no corresponding commands to process id(s)
[2026-04-16 17:35:41] 2026-04-16 21:34:54,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-16 17:35:41] 2026-04-16 21:34:54,599 | INFO     | did not find any defunct processes belonging to 410792
[2026-04-16 17:35:41] 2026-04-16 21:34:54,607 | INFO     | did not find any defunct processes belonging to 410792
[2026-04-16 17:35:41] 2026-04-16 21:34:54,607 | INFO     | Ready for new job
[2026-04-16 17:35:41] 2026-04-16 21:34:54,609 | INFO     | **************************************
[2026-04-16 17:35:41] 2026-04-16 21:34:54,609 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-16 17:35:41] 2026-04-16 21:34:54,609 | INFO     | **************************************
[2026-04-16 17:35:41] 2026-04-16 21:34:54,609 | INFO     | 
[2026-04-16 17:35:41] 2026-04-16 21:34:54,614 | INFO     | architecture information:
[2026-04-16 17:35:41] 2026-04-16 21:34:54,614 | INFO     | executing command: cat /etc/os-release
[2026-04-16 17:35:41] 2026-04-16 21:34:54,630 | INFO     | cat /etc/os-release:
[2026-04-16 17:35:41] NAME="CentOS Linux"
[2026-04-16 17:35:41] VERSION="7 (Core)"
[2026-04-16 17:35:41] ID="centos"
[2026-04-16 17:35:41] ID_LIKE="rhel fedora"
[2026-04-16 17:35:41] VERSION_ID="7"
[2026-04-16 17:35:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-16 17:35:41] ANSI_COLOR="0;31"
[2026-04-16 17:35:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-16 17:35:41] HOME_URL="https://www.centos.org/"
[2026-04-16 17:35:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-16 17:35:41] 
[2026-04-16 17:35:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-16 17:35:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-16 17:35:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-16 17:35:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-16 17:35:41] 
[2026-04-16 17:35:41] 2026-04-16 21:34:54,630 | INFO     | **************************************
[2026-04-16 17:35:41] 2026-04-16 21:34:55,133 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC_31420/slots/0
[2026-04-16 17:35:41] 2026-04-16 21:34:55,150 | INFO     | sufficient remaining disk space (369680711680 B)
[2026-04-16 17:35:41] 2026-04-16 21:34:55,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-16 17:35:41] 2026-04-16 21:34:55,150 | INFO     | current server update state: UPDATING_FINAL
[2026-04-16 17:35:41] 2026-04-16 21:34:55,150 | INFO     | update_server=False
[2026-04-16 17:35:41] 2026-04-16 21:34:55,150 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-16 17:35:41] 2026-04-16 21:34:55,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-16 17:35:41] 2026-04-16 21:34:55,177 | INFO     | all data control threads have been joined
[2026-04-16 17:35:41] 2026-04-16 21:34:55,602 | INFO     | all job control threads have been joined
[2026-04-16 17:35:41] 2026-04-16 21:34:55,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-16 17:35:41] 2026-04-16 21:34:56,156 | INFO     | [job] retrieve thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,172 | WARNING  | process 410792 can no longer be monitored (due to stat problems) - aborting
[2026-04-16 17:35:41] 2026-04-16 21:34:56,182 | INFO     | [data] control thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,328 | INFO     | [payload] failed_post thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,376 | INFO     | [payload] validate_post thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,392 | INFO     | all payload control threads have been joined
[2026-04-16 17:35:41] 2026-04-16 21:34:56,420 | INFO     | using path: /home/whitlerd/Desktop/BOINC_31420/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-16 17:35:41] 2026-04-16 21:34:56,421 | INFO     | using path: /home/whitlerd/Desktop/BOINC_31420/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-16 17:35:41] 2026-04-16 21:34:56,422 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-16 17:35:41] 2026-04-16 21:34:56,422 | WARNING  | maxPSS not found in memory monitor output
[2026-04-16 17:35:41] 2026-04-16 21:34:56,422 | INFO     | skipping file size check of payload stdout file (/home/whitlerd/Desktop/BOINC_31420/slots/0/PanDA_Pilot-7071901126/payload.stdout) since it has not been created ye
[2026-04-16 17:35:41] 2026-04-16 21:34:56,423 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC_31420/slots/0
[2026-04-16 17:35:41] 2026-04-16 21:34:56,442 | INFO     | sufficient remaining disk space (369680711680 B)
[2026-04-16 17:35:41] 2026-04-16 21:34:56,442 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-16 17:35:41] 2026-04-16 21:34:56,443 | INFO     | output file size check: skipping output file /home/whitlerd/Desktop/BOINC_31420/slots/0/PanDA_Pilot-7071901126/HITS.49263200._005091.pool.root.1 since it does not 
[2026-04-16 17:35:41] 2026-04-16 21:34:56,576 | INFO     | [job] create_data_payload thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,608 | INFO     | [job] control thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,692 | INFO     | [payload] validate_pre thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:56,776 | INFO     | number of running child processes to parent process 410792: 1
[2026-04-16 17:35:41] 2026-04-16 21:34:56,777 | INFO     | maximum number of monitored processes: 6
[2026-04-16 17:35:41] 2026-04-16 21:34:56,777 | INFO     | aborting job monitoring since job object (job id=7071901126) has expired
[2026-04-16 17:35:41] 2026-04-16 21:34:56,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-16 17:35:41] 2026-04-16 21:34:56,777 | INFO     | will abort loop
[2026-04-16 17:35:41] 2026-04-16 21:34:56,849 | INFO     | [data] copytool_in thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:57,397 | INFO     | [payload] control thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:57,489 | INFO     | [payload] execute_payloads thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:57,562 | INFO     | [job] validate thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:57,783 | INFO     | [job] job monitor thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:57,923 | INFO     | [data] copytool_out thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:58,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-16 17:35:41] 2026-04-16 21:34:59,140 | INFO     | [job] queue monitor thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:34:59,156 | INFO     | [data] queue_monitor thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:35:05,896 | INFO     | job.realtimelogging is not enabled
[2026-04-16 17:35:41] 2026-04-16 21:35:06,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-16 17:35:41] 2026-04-16 21:35:23,413 | INFO     | 10302s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-16 17:35:41] 2026-04-16 21:35:24,788 | INFO     | PID=406002 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-16 17:35:41] 2026-04-16 21:35:24,788 | INFO     | found 0 job(s) in 20 queues
[2026-04-16 17:35:41] 2026-04-16 21:35:24,788 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-16 17:35:41] 2026-04-16 21:35:24,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-16 17:35:41] 2026-04-16 21:35:34,438 | INFO     | [monitor] cgroup control has ended
[2026-04-16 17:35:41] 2026-04-16 21:35:36,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126931957360448)>', '<ExcThread(monitor, started 126931215300352)>']
[2026-04-16 17:35:41] 2026-04-16 21:35:36,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-16 17:35:41] 2026-04-16 21:35:36,847 | INFO     | [monitor] control thread has ended
[2026-04-16 17:35:41] 2026-04-16 21:35:41,096 | INFO     | all workflow threads have been joined
[2026-04-16 17:35:41] 2026-04-16 21:35:41,097 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-16 17:35:41] 2026-04-16 21:35:41,097 | INFO     | traces error code: 0
[2026-04-16 17:35:41] 2026-04-16 21:35:41,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-16 17:35:41] 2026-04-16 21:35:41,262 [wrapper] ==== pilot stdout END ====
[2026-04-16 17:35:41] 2026-04-16 21:35:41,267 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-16 17:35:41] 2026-04-16 21:35:41,269 [wrapper] pilotpid: 406002
[2026-04-16 17:35:41] 2026-04-16 21:35:41,272 [wrapper] Pilot exit status: 0
[2026-04-16 17:35:41] 2026-04-16 21:35:41,286 [wrapper] pandaids: 7071901126
[2026-04-16 17:35:41] 2026-04-16 21:35:41,331 [wrapper] cleanup supervisor_pilot  422764 406003
[2026-04-16 17:35:41] 2026-04-16 21:35:41,337 [wrapper] Test setup, not cleaning
[2026-04-16 17:35:41] 2026-04-16 21:35:41,340 [wrapper] apfmon messages muted
[2026-04-16 17:35:41] 2026-04-16 21:35:41,342 [wrapper] ==== wrapper stdout END ====
[2026-04-16 17:35:41] 2026-04-16 21:35:41,344 [wrapper] ==== wrapper stderr END ====
[2026-04-16 17:35:41]  *** Error codes and diagnostics ***
[2026-04-16 17:35:41]     "exeErrorCode": 0,
[2026-04-16 17:35:41]     "pilotErrorCode": 0,
[2026-04-16 17:35:41]  *** Listing of results directory ***
[2026-04-16 17:35:41] total 412568
[2026-04-16 17:35:41] -rwx------ 1 whitlerd whitlerd     36322 Apr  9 13:44 runpilot2-wrapper.sh
[2026-04-16 17:35:41] -rw-r--r-- 1 whitlerd whitlerd      5094 Apr  9 13:56 queuedata.json
[2026-04-16 17:35:41] -rw-r--r-- 1 whitlerd whitlerd    644190 Apr  9 13:56 pilot3.tar.gz
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd       100 Apr 16 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-16 17:35:41] -rwxr-xr-x 1 whitlerd whitlerd      7986 Apr 16 14:42 run_atlas
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd       105 Apr 16 14:42 job.xml
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd 222017840 Apr 16 14:42 EVNT.49263198._000204.pool.root.1
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd    656928 Apr 16 14:42 input.tar.gz
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd     15665 Apr 16 14:42 start_atlas.sh
[2026-04-16 17:35:41] drwxrwx--x 2 whitlerd whitlerd      4096 Apr 16 14:42 shared
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd      8946 Apr 16 14:42 init_data.xml
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr 16 14:42 boinc_setup_complete
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd         0 Apr 16 14:42 boinc_lockfile
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd      2573 Apr 16 14:42 pandaJob.out
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd    997712 Apr 16 14:43 agis_schedconf.cvmfs.json
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd   1511633 Apr 16 14:43 agis_ddmendpoints.agis.ALL.json
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd       434 Apr 16 14:43 workernode_map.json
[2026-04-16 17:35:41] drwx------ 5 whitlerd whitlerd      4096 Apr 16 14:43 pilot3
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd 193856660 Apr 16 17:34 HITS.49263200._005091.pool.root.1
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd       488 Apr 16 17:34 boinc_task_state.xml
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd        95 Apr 16 17:34 pilot_heartbeat.json
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd      1039 Apr 16 17:34 memory_monitor_summary.json
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd    302550 Apr 16 17:34 log.49263200._005091.job.log.tgz.1
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd      6387 Apr 16 17:34 heartbeat_new.json
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd      6278 Apr 16 17:34 heartbeat.json
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd      8192 Apr 16 17:35 boinc_mmap_file
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd        28 Apr 16 17:35 wrapper_checkpoint.txt
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd      6535 Apr 16 17:35 pilotlog.txt
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd    962718 Apr 16 17:35 log.49263200._005091.job.log.1
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd       357 Apr 16 17:35 output.list
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd       410 Apr 16 17:35 runtime_log
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd   1280000 Apr 16 17:35 result.tar.gz
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd      8738 Apr 16 17:35 runtime_log.err
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd       655 Apr 16 17:35 e59a7c1b34ae.diag
[2026-04-16 17:35:41] -rw-rw-r-- 1 whitlerd whitlerd     21518 Apr 16 17:35 stderr.txt
[2026-04-16 17:35:41] HITS file was successfully produced:
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd 193856660 Apr 16 17:34 shared/HITS.pool.root.1
[2026-04-16 17:35:41]  *** Contents of shared directory: ***
[2026-04-16 17:35:41] total 408052
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd 222017840 Apr 16 14:42 ATLAS.root_0
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd    656928 Apr 16 14:42 input.tar.gz
[2026-04-16 17:35:41] -rw-r--r-- 2 whitlerd whitlerd     15665 Apr 16 14:42 start_atlas.sh
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd 193856660 Apr 16 17:34 HITS.pool.root.1
[2026-04-16 17:35:41] -rw------- 1 whitlerd whitlerd   1280000 Apr 16 17:35 result.tar.gz
17:35:42 (401628): run_atlas exited; CPU time 40185.520694
17:35:42 (401628): called boinc_finish(0)

</stderr_txt>
]]>

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