Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:12:52 (414): wrapper (7.7.26015): starting
12:12:52 (414): wrapper: running run_atlas (--nthreads 8)
[2026-04-16 12:12:52] Arguments: --nthreads 8
[2026-04-16 12:12:52] Threads: 8
[2026-04-16 12:12:52] Checking for CVMFS
[2026-04-16 12:12:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-16 12:12:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-16 12:12:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-16 12:12:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-16 12:12:53] 2.11.2.0 2786 34676 81444 158534 0 1 20029138 20275200 1 130560 0 7279547 99.975 1213505 14206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-16 12:12:53] CVMFS is ok
[2026-04-16 12:12:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-16 12:12:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-16 12:12:53] Further information can be found at the LHC@home message board.
[2026-04-16 12:12:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-16 12:12:53] Checking for apptainer binary...
[2026-04-16 12:12:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-16 12:12:53] Running /usr/bin/apptainer --version
[2026-04-16 12:12:53] apptainer version 1.3.2-1.el7
[2026-04-16 12:12:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-16 12:12:55] c-204-14.aglt2.org
[2026-04-16 12:12:55] apptainer works
[2026-04-16 12:12:55] Set ATHENA_PROC_NUMBER=8
[2026-04-16 12:12:55] Set ATHENA_CORE_NUMBER=8
[2026-04-16 12:12:55] Starting ATLAS job with PandaID=7094145019
[2026-04-16 12:12:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-16 14:23:03]  *** The last 200 lines of the pilot log: ***
[2026-04-16 14:23:03] 2026-04-16 18:22:30,937 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,937 | INFO     | mean y: 2486296.4173228345
[2026-04-16 14:23:03] 2026-04-16 18:22:30,937 | INFO     | intersect: 2486296.4173228345
[2026-04-16 14:23:03] 2026-04-16 18:22:30,937 | INFO     | chi2: 2.4369098463966847
[2026-04-16 14:23:03] 2026-04-16 18:22:30,937 | INFO     | sum of square deviations: 563026370.5
[2026-04-16 14:23:03] 2026-04-16 18:22:30,938 | INFO     | sum of deviations: 22813167136.5
[2026-04-16 14:23:03] 2026-04-16 18:22:30,938 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,938 | INFO     | mean y: 2502406.844262295
[2026-04-16 14:23:03] 2026-04-16 18:22:30,938 | INFO     | intersect: 2502406.844262295
[2026-04-16 14:23:03] 2026-04-16 18:22:30,939 | INFO     | chi2: 1.6571582738435373
[2026-04-16 14:23:03] 2026-04-16 18:22:30,939 | INFO     | current chi2=1.6571582738435373 (change=31.997555170377773 %)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,939 | INFO     | sum of square deviations: 496597218.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | sum of deviations: 22050269874.000004
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | mean y: 2500655.752136752
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | intersect: 2500655.752136752
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | chi2: 1.6563800177866876
[2026-04-16 14:23:03] 2026-04-16 18:22:30,940 | INFO     | current chi2=1.6563800177866876 (change=0.046963290660500236 %)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,941 | INFO     | right removable region: 116
[2026-04-16 14:23:03] 2026-04-16 18:22:30,941 | INFO     | sum of square deviations: 563026370.5
[2026-04-16 14:23:03] 2026-04-16 18:22:30,941 | INFO     | sum of deviations: -5760094579.99999
[2026-04-16 14:23:03] 2026-04-16 18:22:30,941 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,942 | INFO     | mean y: 2529392.4098360655
[2026-04-16 14:23:03] 2026-04-16 18:22:30,942 | INFO     | intersect: 2529392.4098360655
[2026-04-16 14:23:03] 2026-04-16 18:22:30,942 | INFO     | chi2: 0.9373468093640246
[2026-04-16 14:23:03] 2026-04-16 18:22:30,942 | INFO     | current chi2=0.9373468093640246 (change=61.53543346094546 %)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,942 | INFO     | sum of square deviations: 496597218.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,943 | INFO     | sum of deviations: -11774830366.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,943 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,943 | INFO     | mean y: 2543205.871794872
[2026-04-16 14:23:03] 2026-04-16 18:22:30,943 | INFO     | intersect: 2543205.871794872
[2026-04-16 14:23:03] 2026-04-16 18:22:30,944 | INFO     | chi2: 0.8387404085950911
[2026-04-16 14:23:03] 2026-04-16 18:22:30,944 | INFO     | current chi2=0.8387404085950911 (change=10.519735041914355 %)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,944 | INFO     | left removable region: 10
[2026-04-16 14:23:03] 2026-04-16 18:22:30,944 | INFO     | sum of square deviations: 369281342.5
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | sum of deviations: -3044127560.5000024
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | mean x (centered): 0.0
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | mean y: 2564476.4245283017
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | intersect: 2564476.4245283017
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | chi2: 0.03380307578579188
[2026-04-16 14:23:03] 2026-04-16 18:22:30,945 | INFO     | current memory leak: -8.24 B/s (using 106 data points, chi2=0.03)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | could have reported an average CPU frequency of 1679 MHz (8 samples)
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | ..............................
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . Timing measurements:
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . get job = 0 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . initial setup = 8 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . payload setup = 18 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . stage-in = 0 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,946 | INFO     | . payload execution = 7709 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,947 | INFO     | . stage-out = 0 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,947 | INFO     | . log creation = 0 s
[2026-04-16 14:23:03] 2026-04-16 18:22:30,947 | INFO     | ..............................
[2026-04-16 14:23:03] 2026-04-16 18:22:31,030 | INFO     | 
[2026-04-16 14:23:03] 2026-04-16 18:22:31,030 | INFO     | job summary report
[2026-04-16 14:23:03] 2026-04-16 18:22:31,030 | INFO     | --------------------------------------------------
[2026-04-16 14:23:03] 2026-04-16 18:22:31,030 | INFO     | PanDA job id: 7094145019
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | task id: 49545114
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | errors: (none)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | pilot state: finished 
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | transexitcode: 0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,031 | INFO     | exeerrorcode: 0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,032 | INFO     | exeerrordiag: 
[2026-04-16 14:23:03] 2026-04-16 18:22:31,032 | INFO     | exitcode: 0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,032 | INFO     | exitmsg: OK
[2026-04-16 14:23:03] 2026-04-16 18:22:31,032 | INFO     | cpuconsumptiontime: 55172 s
[2026-04-16 14:23:03] 2026-04-16 18:22:31,032 | INFO     | nevents: 400
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | neventsw: 0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | pid: 8826
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | pgrp: 8826
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | corecount: 8
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | event service: False
[2026-04-16 14:23:03] 2026-04-16 18:22:31,033 | INFO     | sizes: {0: 2279780, 1: 2281609, 12: 2281609, 7731: 2309292, 7732: 2318290, 7734: 2318346, 7736: 2318668}
[2026-04-16 14:23:03] 2026-04-16 18:22:31,034 | INFO     | --------------------------------------------------
[2026-04-16 14:23:03] 2026-04-16 18:22:31,034 | INFO     | 
[2026-04-16 14:23:03] 2026-04-16 18:22:31,034 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,064 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,064 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,065 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,065 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,065 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,065 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,065 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,068 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-16 14:23:03] 2026-04-16 18:22:31,068 | INFO     | job 7094145019 has completed (purged errors)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,068 | INFO     | overall cleanup function is called
[2026-04-16 14:23:03] 2026-04-16 18:22:31,413 | WARNING  | process 8826 can no longer be monitored (due to stat problems) - aborting
[2026-04-16 14:23:03] 2026-04-16 18:22:31,490 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,491 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,491 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-16 14:23:03] 2026-04-16 18:22:31,491 | WARNING  | maxPSS not found in memory monitor output
[2026-04-16 14:23:03] 2026-04-16 18:22:31,492 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7094145019/payload.stdout) since it has not been created yet
[2026-04-16 14:23:03] 2026-04-16 18:22:31,492 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-16 14:23:03] 2026-04-16 18:22:31,511 | INFO     | sufficient remaining disk space (18441306112 B)
[2026-04-16 14:23:03] 2026-04-16 18:22:31,512 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-16 14:23:03] 2026-04-16 18:22:31,512 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7094145019/HITS.49545114._016246.pool.root.1 since it does not exist
[2026-04-16 14:23:03] 2026-04-16 18:22:31,608 | INFO     | number of running child processes to parent process 8826: 1
[2026-04-16 14:23:03] 2026-04-16 18:22:31,608 | INFO     | maximum number of monitored processes: 6
[2026-04-16 14:23:03] 2026-04-16 18:22:31,609 | INFO     | aborting job monitoring since job object (job id=7094145019) has expired
[2026-04-16 14:23:03] 2026-04-16 18:22:32,077 | INFO     | --- collectZombieJob: --- 10, [8826]
[2026-04-16 14:23:03] 2026-04-16 18:22:32,077 | INFO     | zombie collector waiting for pid 8826
[2026-04-16 14:23:03] 2026-04-16 18:22:32,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-16 14:23:03] 2026-04-16 18:22:32,077 | INFO     | collected zombie processes
[2026-04-16 14:23:03] 2026-04-16 18:22:32,077 | INFO     | will attempt to kill all subprocesses of pid=8826
[2026-04-16 14:23:03] 2026-04-16 18:22:32,165 | INFO     | process IDs to be killed: [8826] (in reverse order)
[2026-04-16 14:23:03] 2026-04-16 18:22:32,223 | WARNING  | found no corresponding commands to process id(s)
[2026-04-16 14:23:03] 2026-04-16 18:22:32,223 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-16 14:23:03] 2026-04-16 18:22:32,228 | INFO     | did not find any defunct processes belonging to 8826
[2026-04-16 14:23:03] 2026-04-16 18:22:32,232 | INFO     | did not find any defunct processes belonging to 8826
[2026-04-16 14:23:03] 2026-04-16 18:22:32,232 | INFO     | Ready for new job
[2026-04-16 14:23:03] 2026-04-16 18:22:32,234 | INFO     | **************************************
[2026-04-16 14:23:03] 2026-04-16 18:22:32,234 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-16 14:23:03] 2026-04-16 18:22:32,234 | INFO     | **************************************
[2026-04-16 14:23:03] 2026-04-16 18:22:32,234 | INFO     | 
[2026-04-16 14:23:03] 2026-04-16 18:22:32,235 | INFO     | architecture information:
[2026-04-16 14:23:03] 2026-04-16 18:22:32,235 | INFO     | executing command: cat /etc/os-release
[2026-04-16 14:23:03] 2026-04-16 18:22:32,253 | INFO     | cat /etc/os-release:
[2026-04-16 14:23:03] NAME="CentOS Linux"
[2026-04-16 14:23:03] VERSION="7 (Core)"
[2026-04-16 14:23:03] ID="centos"
[2026-04-16 14:23:03] ID_LIKE="rhel fedora"
[2026-04-16 14:23:03] VERSION_ID="7"
[2026-04-16 14:23:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-16 14:23:03] ANSI_COLOR="0;31"
[2026-04-16 14:23:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-16 14:23:03] HOME_URL="https://www.centos.org/"
[2026-04-16 14:23:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-16 14:23:03] 
[2026-04-16 14:23:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-16 14:23:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-16 14:23:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-16 14:23:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-16 14:23:03] 
[2026-04-16 14:23:03] 2026-04-16 18:22:32,253 | INFO     | **************************************
[2026-04-16 14:23:03] 2026-04-16 18:22:32,757 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-16 14:23:03] 2026-04-16 18:22:32,774 | INFO     | sufficient remaining disk space (18442354688 B)
[2026-04-16 14:23:03] 2026-04-16 18:22:32,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-16 14:23:03] 2026-04-16 18:22:32,775 | INFO     | current server update state: UPDATING_FINAL
[2026-04-16 14:23:03] 2026-04-16 18:22:32,776 | INFO     | update_server=False
[2026-04-16 14:23:03] 2026-04-16 18:22:32,776 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-16 14:23:03] 2026-04-16 18:22:32,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-16 14:23:03] 2026-04-16 18:22:32,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-16 14:23:03] 2026-04-16 18:22:32,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-16 14:23:03] 2026-04-16 18:22:32,777 | INFO     | aborting loop
[2026-04-16 14:23:03] 2026-04-16 18:22:33,049 | INFO     | all payload control threads have been joined
[2026-04-16 14:23:03] 2026-04-16 18:22:33,321 | INFO     | all data control threads have been joined
[2026-04-16 14:23:03] 2026-04-16 18:22:33,780 | INFO     | [job] retrieve thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:33,783 | INFO     | [job] queue monitor thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:33,783 | INFO     | [job] job monitor thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:33,888 | INFO     | [data] copytool_in thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:33,948 | INFO     | all job control threads have been joined
[2026-04-16 14:23:03] 2026-04-16 18:22:34,055 | INFO     | [payload] control thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,204 | INFO     | [payload] execute_payloads thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,328 | INFO     | [data] control thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,615 | INFO     | [job] validate thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,714 | INFO     | [job] create_data_payload thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,740 | INFO     | [payload] validate_post thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,782 | INFO     | [data] copytool_out thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,819 | INFO     | [payload] failed_post thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:34,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-16 14:23:03] 2026-04-16 18:22:34,931 | INFO     | [monitor] cgroup control has ended
[2026-04-16 14:23:03] 2026-04-16 18:22:34,953 | INFO     | [job] control thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:35,212 | INFO     | [payload] validate_pre thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:38,899 | INFO     | [data] queue_monitor thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:43,241 | INFO     | job.realtimelogging is not enabled
[2026-04-16 14:23:03] 2026-04-16 18:22:44,246 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-16 14:23:03] 2026-04-16 18:22:45,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619386804032)>', '<ExcThread(monitor, started 140618806310656)>']
[2026-04-16 14:23:03] 2026-04-16 18:22:50,075 | INFO     | all workflow threads have been joined
[2026-04-16 14:23:03] 2026-04-16 18:22:50,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-16 14:23:03] 2026-04-16 18:22:50,076 | INFO     | traces error code: 0
[2026-04-16 14:23:03] 2026-04-16 18:22:50,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-16 14:23:03] 2026-04-16 18:23:02,890 | INFO     | PID=4265 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-16 14:23:03] 2026-04-16 18:23:02,891 | INFO     | found 0 job(s) in 20 queues
[2026-04-16 14:23:03] 2026-04-16 18:23:02,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-16 14:23:03] 2026-04-16 18:23:02,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-16 14:23:03] 2026-04-16 18:23:02,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-16 14:23:03] 2026-04-16 18:23:02,892 | CRITICAL | thread 'MainThread' is not alive
[2026-04-16 14:23:03] 2026-04-16 18:23:02,892 | INFO     | [monitor] control thread has ended
[2026-04-16 14:23:03] 2026-04-16 18:23:02,998 [wrapper] ==== pilot stdout END ====
[2026-04-16 14:23:03] 2026-04-16 18:23:03,004 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-16 14:23:03] 2026-04-16 18:23:03,008 [wrapper] pilotpid: 4265
[2026-04-16 14:23:03] 2026-04-16 18:23:03,013 [wrapper] Pilot exit status: 0
[2026-04-16 14:23:03] 2026-04-16 18:23:03,033 [wrapper] pandaids: 7094145019
[2026-04-16 14:23:03] 2026-04-16 18:23:03,082 [wrapper] cleanup supervisor_pilot 24426 4266
[2026-04-16 14:23:03] 2026-04-16 18:23:03,087 [wrapper] Test setup, not cleaning
[2026-04-16 14:23:03] 2026-04-16 18:23:03,092 [wrapper] apfmon messages muted
[2026-04-16 14:23:03] 2026-04-16 18:23:03,096 [wrapper] ==== wrapper stdout END ====
[2026-04-16 14:23:03] 2026-04-16 18:23:03,101 [wrapper] ==== wrapper stderr END ====
[2026-04-16 14:23:03]  *** Error codes and diagnostics ***
[2026-04-16 14:23:03]     "exeErrorCode": 0,
[2026-04-16 14:23:03]     "pilotErrorCode": 0,
[2026-04-16 14:23:03]  *** Listing of results directory ***
[2026-04-16 14:23:03] total 459456
[2026-04-16 14:23:03] -rwx------ 1 boincer umatlas     36322 Apr 16 12:02 runpilot2-wrapper.sh
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas      5094 Apr 16 12:02 queuedata.json
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas    644190 Apr 16 12:02 pilot3.tar.gz
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas       100 Apr 16 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-16 14:23:03] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 12:12 run_atlas
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas       105 Apr 16 12:12 job.xml
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas 278226055 Apr 16 12:12 EVNT.49539591._000650.pool.root.1
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas     15665 Apr 16 12:12 start_atlas.sh
[2026-04-16 14:23:03] drwxrwx--x 2 boincer umatlas      4096 Apr 16 12:12 shared
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas    656923 Apr 16 12:12 input.tar.gz
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas         0 Apr 16 12:12 boinc_lockfile
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas      2605 Apr 16 12:12 pandaJob.out
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas        57 Apr 16 12:12 setup.sh.local
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas    997418 Apr 16 12:13 agis_schedconf.cvmfs.json
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas   1511633 Apr 16 12:13 agis_ddmendpoints.agis.ALL.json
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas       432 Apr 16 12:13 workernode_map.json
[2026-04-16 14:23:03] drwx------ 5 boincer umatlas      4096 Apr 16 12:13 pilot3
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas 186064780 Apr 16 14:21 HITS.49545114._016246.pool.root.1
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas        95 Apr 16 14:22 pilot_heartbeat.json
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas       487 Apr 16 14:22 boinc_task_state.xml
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas      1049 Apr 16 14:22 memory_monitor_summary.json
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas    346881 Apr 16 14:22 log.49545114._016246.job.log.tgz.1
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas      6426 Apr 16 14:22 heartbeat_new.json
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas      6317 Apr 16 14:22 heartbeat.json
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas      5826 Apr 16 14:22 init_data.xml
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas      8192 Apr 16 14:22 boinc_mmap_file
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas        27 Apr 16 14:22 wrapper_checkpoint.txt
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas       814 Apr 16 14:23 pilotlog.txt
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas    721050 Apr 16 14:23 log.49545114._016246.job.log.1
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas       357 Apr 16 14:23 output.list
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas       410 Apr 16 14:23 runtime_log
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas   1085440 Apr 16 14:23 result.tar.gz
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas      8963 Apr 16 14:23 runtime_log.err
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas       660 Apr 16 14:23 07f52004310b.diag
[2026-04-16 14:23:03] -rw-r--r-- 1 boincer umatlas     21256 Apr 16 14:23 stderr.txt
[2026-04-16 14:23:03] HITS file was successfully produced:
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas 186064780 Apr 16 14:21 shared/HITS.pool.root.1
[2026-04-16 14:23:03]  *** Contents of shared directory: ***
[2026-04-16 14:23:03] total 455136
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas 278226055 Apr 16 12:12 ATLAS.root_0
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas     15665 Apr 16 12:12 start_atlas.sh
[2026-04-16 14:23:03] -rw-r--r-- 2 boincer umatlas    656923 Apr 16 12:12 input.tar.gz
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas 186064780 Apr 16 14:21 HITS.pool.root.1
[2026-04-16 14:23:03] -rw------- 1 boincer umatlas   1085440 Apr 16 14:23 result.tar.gz
14:23:04 (414): run_atlas exited; CPU time 55121.619294
14:23:04 (414): called boinc_finish(0)

</stderr_txt>
]]>

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