Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:41:43 (3573859): wrapper (7.7.26015): starting
01:41:43 (3573859): wrapper: running run_atlas (--nthreads 3)
[2026-04-15 01:41:43] Arguments: --nthreads 3
[2026-04-15 01:41:43] Threads: 3
[2026-04-15 01:41:43] Checking for CVMFS
[2026-04-15 01:41:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-15 01:41:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-15 01:41:46] Running cvmfs_config stat atlas.cern.ch
[2026-04-15 01:41:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-15 01:41:46] 2.9.2.0 3506915 498 59060 158476 2 50 30199694 36864000 0 130560 0 264694 99.981 27463 6131 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-15 01:41:46] CVMFS is ok
[2026-04-15 01:41:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-15 01:41:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-15 01:41:46] Further information can be found at the LHC@home message board.
[2026-04-15 01:41:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-15 01:41:46] Checking for apptainer binary...
[2026-04-15 01:41:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-15 01:41:46] Running /usr/bin/apptainer --version
[2026-04-15 01:41:46] apptainer version 1.4.1-1.1
[2026-04-15 01:41:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-15 01:41:46] atlasA115
[2026-04-15 01:41:46] apptainer works
[2026-04-15 01:41:46] Set ATHENA_PROC_NUMBER=3
[2026-04-15 01:41:46] Set ATHENA_CORE_NUMBER=3
[2026-04-15 01:41:46] Starting ATLAS job with PandaID=7089566375
[2026-04-15 01:41:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-15 03:06:07]  *** The last 200 lines of the pilot log: ***
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | job 7089566375 has completed (purged errors)
[2026-04-15 03:06:07] 2026-04-15 01:05:21,272 | INFO     | overall cleanup function is called
[2026-04-15 03:06:07] 2026-04-15 01:05:22,279 | INFO     | --- collectZombieJob: --- 10, [3582324]
[2026-04-15 03:06:07] 2026-04-15 01:05:22,279 | INFO     | zombie collector waiting for pid 3582324
[2026-04-15 03:06:07] 2026-04-15 01:05:22,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-15 03:06:07] 2026-04-15 01:05:22,279 | INFO     | collected zombie processes
[2026-04-15 03:06:07] 2026-04-15 01:05:22,279 | INFO     | will attempt to kill all subprocesses of pid=3582324
[2026-04-15 03:06:07] 2026-04-15 01:05:22,320 | INFO     | process IDs to be killed: [3582324] (in reverse order)
[2026-04-15 03:06:07] 2026-04-15 01:05:22,344 | WARNING  | found no corresponding commands to process id(s)
[2026-04-15 03:06:07] 2026-04-15 01:05:22,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-15 03:06:07] 2026-04-15 01:05:22,345 | INFO     | did not find any defunct processes belonging to 3582324
[2026-04-15 03:06:07] 2026-04-15 01:05:22,346 | INFO     | did not find any defunct processes belonging to 3582324
[2026-04-15 03:06:07] 2026-04-15 01:05:22,346 | INFO     | Ready for new job
[2026-04-15 03:06:07] 2026-04-15 01:05:22,347 | INFO     | **************************************
[2026-04-15 03:06:07] 2026-04-15 01:05:22,347 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-15 03:06:07] 2026-04-15 01:05:22,347 | INFO     | **************************************
[2026-04-15 03:06:07] 2026-04-15 01:05:22,347 | INFO     | 
[2026-04-15 03:06:07] 2026-04-15 01:05:22,347 | INFO     | architecture information:
[2026-04-15 03:06:07] 2026-04-15 01:05:22,348 | INFO     | executing command: cat /etc/os-release
[2026-04-15 03:06:07] 2026-04-15 01:05:22,357 | INFO     | cat /etc/os-release:
[2026-04-15 03:06:07] NAME="CentOS Linux"
[2026-04-15 03:06:07] VERSION="7 (Core)"
[2026-04-15 03:06:07] ID="centos"
[2026-04-15 03:06:07] ID_LIKE="rhel fedora"
[2026-04-15 03:06:07] VERSION_ID="7"
[2026-04-15 03:06:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-15 03:06:07] ANSI_COLOR="0;31"
[2026-04-15 03:06:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-15 03:06:07] HOME_URL="https://www.centos.org/"
[2026-04-15 03:06:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-15 03:06:07] 
[2026-04-15 03:06:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-15 03:06:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-15 03:06:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-15 03:06:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-15 03:06:07] 
[2026-04-15 03:06:07] 2026-04-15 01:05:22,357 | INFO     | **************************************
[2026-04-15 03:06:07] 2026-04-15 01:05:22,860 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-15 03:06:07] 2026-04-15 01:05:22,874 | INFO     | sufficient remaining disk space (331110940672 B)
[2026-04-15 03:06:07] 2026-04-15 01:05:22,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-15 03:06:07] 2026-04-15 01:05:22,874 | INFO     | current server update state: UPDATING_FINAL
[2026-04-15 03:06:07] 2026-04-15 01:05:22,874 | INFO     | update_server=False
[2026-04-15 03:06:07] 2026-04-15 01:05:22,875 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-15 03:06:07] 2026-04-15 01:05:22,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-15 03:06:07] 2026-04-15 01:05:22,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-15 03:06:07] 2026-04-15 01:05:22,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-15 03:06:07] 2026-04-15 01:05:22,887 | INFO     | aborting loop
[2026-04-15 03:06:07] 2026-04-15 01:05:22,997 | INFO     | all job control threads have been joined
[2026-04-15 03:06:07] 2026-04-15 01:05:23,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-15 03:06:07] 2026-04-15 01:05:23,239 | INFO     | all payload control threads have been joined
[2026-04-15 03:06:07] 2026-04-15 01:05:23,699 | INFO     | all data control threads have been joined
[2026-04-15 03:06:07] 2026-04-15 01:05:23,877 | INFO     | [job] queue monitor thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:23,880 | INFO     | [job] retrieve thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:23,892 | INFO     | [job] job monitor thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:23,896 | INFO     | [payload] execute_payloads thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:24,002 | INFO     | [job] control thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:24,228 | INFO     | [payload] validate_post thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:24,245 | INFO     | [payload] control thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:24,419 | INFO     | [payload] failed_post thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:24,705 | INFO     | [data] control thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:25,048 | INFO     | [data] copytool_out thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:25,061 | INFO     | [job] validate thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:25,172 | INFO     | [job] create_data_payload thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:25,194 | INFO     | [payload] validate_pre thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:25,314 | INFO     | [data] copytool_in thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:26,881 | INFO     | [data] queue_monitor thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:33,831 | INFO     | job.realtimelogging is not enabled
[2026-04-15 03:06:07] 2026-04-15 01:05:34,836 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-15 03:06:07] 2026-04-15 01:05:53,466 | INFO     | PID=3577898 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-15 03:06:07] 2026-04-15 01:05:53,466 | INFO     | found 0 job(s) in 20 queues
[2026-04-15 03:06:07] 2026-04-15 01:05:53,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-15 03:06:07] 2026-04-15 01:05:53,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-15 03:06:07] 2026-04-15 01:06:01,241 | INFO     | [monitor] cgroup control has ended
[2026-04-15 03:06:07] 2026-04-15 01:06:02,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249207191360)>', '<ExcThread(monitor, started 140248726103808)>']
[2026-04-15 03:06:07] 2026-04-15 01:06:02,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-15 03:06:07] 2026-04-15 01:06:02,515 | INFO     | [monitor] control thread has ended
[2026-04-15 03:06:07] 2026-04-15 01:06:07,354 | INFO     | all workflow threads have been joined
[2026-04-15 03:06:07] 2026-04-15 01:06:07,354 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-15 03:06:07] 2026-04-15 01:06:07,354 | INFO     | traces error code: 0
[2026-04-15 03:06:07] 2026-04-15 01:06:07,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-15 03:06:07] 2026-04-15 01:06:07,406 [wrapper] ==== pilot stdout END ====
[2026-04-15 03:06:07] 2026-04-15 01:06:07,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-15 03:06:07] 2026-04-15 01:06:07,411 [wrapper] pilotpid: 3577898
[2026-04-15 03:06:07] 2026-04-15 01:06:07,413 [wrapper] Pilot exit status: 0
[2026-04-15 03:06:07] 2026-04-15 01:06:07,421 [wrapper] pandaids: 7089566375
[2026-04-15 03:06:07] 2026-04-15 01:06:07,436 [wrapper] cleanup supervisor_pilot 3587449 3577899
[2026-04-15 03:06:07] 2026-04-15 01:06:07,439 [wrapper] Test setup, not cleaning
[2026-04-15 03:06:07] 2026-04-15 01:06:07,441 [wrapper] apfmon messages muted
[2026-04-15 03:06:07] 2026-04-15 01:06:07,443 [wrapper] ==== wrapper stdout END ====
[2026-04-15 03:06:07] 2026-04-15 01:06:07,446 [wrapper] ==== wrapper stderr END ====
[2026-04-15 03:06:07]  *** Error codes and diagnostics ***
[2026-04-15 03:06:07]     "exeErrorCode": 0,
[2026-04-15 03:06:07]     "pilotErrorCode": 0,
[2026-04-15 03:06:07]  *** Listing of results directory ***
[2026-04-15 03:06:07] total 418052
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc    650909 Apr  3 16:16 pilot3.tar.gz
[2026-04-15 03:06:07] -rwx------ 1 boinc boinc     36322 Apr 13 16:54 runpilot2-wrapper.sh
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc      5094 Apr 13 16:59 queuedata.json
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc       100 Apr 15 01:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-15 03:06:07] -rwxr-xr-x 1 boinc boinc      7986 Apr 15 01:41 run_atlas
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc       105 Apr 15 01:41 job.xml
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc 225532388 Apr 15 01:41 EVNT.49263198._001833.pool.root.1
[2026-04-15 03:06:07] drwxrwx--x 2 boinc boinc      4096 Apr 15 01:41 shared
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc    664477 Apr 15 01:41 input.tar.gz
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc     15665 Apr 15 01:41 start_atlas.sh
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc         0 Apr 15 01:41 boinc_setup_complete
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc      6357 Apr 15 01:41 init_data.xml
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc         0 Apr 15 01:41 boinc_lockfile
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc      2577 Apr 15 01:41 pandaJob.out
[2026-04-15 03:06:07] -rw------- 1 boinc boinc    998598 Apr 15 01:41 agis_schedconf.cvmfs.json
[2026-04-15 03:06:07] -rw------- 1 boinc boinc   1511579 Apr 15 01:41 agis_ddmendpoints.agis.ALL.json
[2026-04-15 03:06:07] -rw------- 1 boinc boinc       429 Apr 15 01:41 workernode_map.json
[2026-04-15 03:06:07] drwx------ 5 boinc boinc      4096 Apr 15 01:41 pilot3
[2026-04-15 03:06:07] -rw------- 1 boinc boinc 197037740 Apr 15 03:05 HITS.49263200._064227.pool.root.1
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc       487 Apr 15 03:05 boinc_task_state.xml
[2026-04-15 03:06:07] -rw------- 1 boinc boinc      1015 Apr 15 03:05 memory_monitor_summary.json
[2026-04-15 03:06:07] -rw------- 1 boinc boinc        95 Apr 15 03:05 pilot_heartbeat.json
[2026-04-15 03:06:07] -rw------- 1 boinc boinc    235090 Apr 15 03:05 log.49263200._064227.job.log.tgz.1
[2026-04-15 03:06:07] -rw------- 1 boinc boinc      6336 Apr 15 03:05 heartbeat_new.json
[2026-04-15 03:06:07] -rw------- 1 boinc boinc      6227 Apr 15 03:05 heartbeat.json
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc        27 Apr 15 03:05 wrapper_checkpoint.txt
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc      8192 Apr 15 03:05 boinc_mmap_file
[2026-04-15 03:06:07] -rw------- 1 boinc boinc      4819 Apr 15 03:06 pilotlog.txt
[2026-04-15 03:06:07] -rw------- 1 boinc boinc    490527 Apr 15 03:06 log.49263200._064227.job.log.1
[2026-04-15 03:06:07] -rw------- 1 boinc boinc       357 Apr 15 03:06 output.list
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc       410 Apr 15 03:06 runtime_log
[2026-04-15 03:06:07] -rw------- 1 boinc boinc    747520 Apr 15 03:06 result.tar.gz
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc      8533 Apr 15 03:06 runtime_log.err
[2026-04-15 03:06:07] -rw------- 1 boinc boinc       660 Apr 15 03:06 03aa24bb9c72.diag
[2026-04-15 03:06:07] -rw-r--r-- 1 boinc boinc     11807 Apr 15 03:06 stderr.txt
[2026-04-15 03:06:07] HITS file was successfully produced:
[2026-04-15 03:06:07] -rw------- 1 boinc boinc 197037740 Apr 15 03:05 shared/HITS.pool.root.1
[2026-04-15 03:06:07]  *** Contents of shared directory: ***
[2026-04-15 03:06:07] total 414076
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc 225532388 Apr 15 01:41 ATLAS.root_0
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc    664477 Apr 15 01:41 input.tar.gz
[2026-04-15 03:06:07] -rw-r--r-- 2 boinc boinc     15665 Apr 15 01:41 start_atlas.sh
[2026-04-15 03:06:07] -rw------- 1 boinc boinc 197037740 Apr 15 03:05 HITS.pool.root.1
[2026-04-15 03:06:07] -rw------- 1 boinc boinc    747520 Apr 15 03:06 result.tar.gz
03:06:09 (3573859): run_atlas exited; CPU time 14018.425247
03:06:09 (3573859): called boinc_finish(0)

</stderr_txt>
]]>

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