Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:48:57 (3349368): wrapper (7.7.26015): starting
23:48:57 (3349368): wrapper: running run_atlas (--nthreads 3)
[2026-04-13 23:48:57] Arguments: --nthreads 3
[2026-04-13 23:48:57] Threads: 3
[2026-04-13 23:48:57] Checking for CVMFS
[2026-04-13 23:48:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 23:48:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 23:48:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 23:48:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 23:48:58] 2.9.2.0 2338549 5898 84124 158430 3 50 11147199 36864000 0 130560 0 3407883 99.988 224293 13770 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-13 23:48:58] CVMFS is ok
[2026-04-13 23:48:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 23:48:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 23:48:58] Further information can be found at the LHC@home message board.
[2026-04-13 23:48:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 23:48:58] Checking for apptainer binary...
[2026-04-13 23:48:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 23:48:58] Running /usr/bin/apptainer --version
[2026-04-13 23:48:58] apptainer version 1.4.1-1.1
[2026-04-13 23:48:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 23:48:58] belleA259
[2026-04-13 23:48:58] apptainer works
[2026-04-13 23:48:58] Set ATHENA_PROC_NUMBER=3
[2026-04-13 23:48:58] Set ATHENA_CORE_NUMBER=3
[2026-04-13 23:48:58] Starting ATLAS job with PandaID=7089657890
[2026-04-13 23:48:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 01:39:31]  *** The last 200 lines of the pilot log: ***
[2026-04-14 01:39:31] 2026-04-13 23:39:00,514 | INFO     | --- collectZombieJob: --- 10, [3357845]
[2026-04-14 01:39:31] 2026-04-13 23:39:00,514 | INFO     | zombie collector waiting for pid 3357845
[2026-04-14 01:39:31] 2026-04-13 23:39:00,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 01:39:31] 2026-04-13 23:39:00,514 | INFO     | collected zombie processes
[2026-04-14 01:39:31] 2026-04-13 23:39:00,514 | INFO     | will attempt to kill all subprocesses of pid=3357845
[2026-04-14 01:39:31] 2026-04-13 23:39:00,565 | INFO     | process IDs to be killed: [3357845] (in reverse order)
[2026-04-14 01:39:31] 2026-04-13 23:39:00,593 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 01:39:31] 2026-04-13 23:39:00,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 01:39:31] 2026-04-13 23:39:00,595 | INFO     | did not find any defunct processes belonging to 3357845
[2026-04-14 01:39:31] 2026-04-13 23:39:00,597 | INFO     | did not find any defunct processes belonging to 3357845
[2026-04-14 01:39:31] 2026-04-13 23:39:00,597 | INFO     | Ready for new job
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | **************************************
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | **************************************
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | 
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | architecture information:
[2026-04-14 01:39:31] 2026-04-13 23:39:00,598 | INFO     | executing command: cat /etc/os-release
[2026-04-14 01:39:31] 2026-04-13 23:39:00,607 | INFO     | cat /etc/os-release:
[2026-04-14 01:39:31] NAME="CentOS Linux"
[2026-04-14 01:39:31] VERSION="7 (Core)"
[2026-04-14 01:39:31] ID="centos"
[2026-04-14 01:39:31] ID_LIKE="rhel fedora"
[2026-04-14 01:39:31] VERSION_ID="7"
[2026-04-14 01:39:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 01:39:31] ANSI_COLOR="0;31"
[2026-04-14 01:39:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 01:39:31] HOME_URL="https://www.centos.org/"
[2026-04-14 01:39:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 01:39:31] 
[2026-04-14 01:39:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 01:39:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 01:39:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 01:39:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 01:39:31] 
[2026-04-14 01:39:31] 2026-04-13 23:39:00,607 | INFO     | **************************************
[2026-04-14 01:39:31] 2026-04-13 23:39:01,110 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | INFO     | sufficient remaining disk space (350868209664 B)
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | INFO     | update_server=False
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | INFO     | aborting loop
[2026-04-14 01:39:31] 2026-04-13 23:39:01,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 01:39:31] 2026-04-13 23:39:01,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 01:39:31] 2026-04-13 23:39:01,317 | INFO     | all payload control threads have been joined
[2026-04-14 01:39:31] 2026-04-13 23:39:02,082 | INFO     | all data control threads have been joined
[2026-04-14 01:39:31] 2026-04-13 23:39:02,121 | INFO     | [job] queue monitor thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,125 | INFO     | [job] retrieve thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,126 | INFO     | [job] job monitor thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,223 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,322 | INFO     | [payload] control thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,652 | INFO     | [payload] validate_post thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,760 | INFO     | [payload] failed_post thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:02,803 | INFO     | all job control threads have been joined
[2026-04-14 01:39:31] 2026-04-13 23:39:03,087 | INFO     | [data] control thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,126 | INFO     | [data] copytool_out thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,218 | INFO     | [job] validate thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,298 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,384 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,453 | INFO     | [data] copytool_in thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:03,808 | INFO     | [job] control thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:04,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 01:39:31] 2026-04-13 23:39:08,571 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:12,027 | INFO     | job.realtimelogging is not enabled
[2026-04-14 01:39:31] 2026-04-13 23:39:13,033 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 01:39:31] 2026-04-13 23:39:15,954 | INFO     | [monitor] cgroup control has ended
[2026-04-14 01:39:31] 2026-04-13 23:39:16,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891678562112)>', '<ExcThread(monitor, started 139891395802880)>']
[2026-04-14 01:39:31] 2026-04-13 23:39:21,984 | INFO     | all workflow threads have been joined
[2026-04-14 01:39:31] 2026-04-13 23:39:21,984 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 01:39:31] 2026-04-13 23:39:21,984 | INFO     | traces error code: 0
[2026-04-14 01:39:31] 2026-04-13 23:39:21,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | INFO     | PID=3353415 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 01:39:31] 2026-04-13 23:39:31,057 | INFO     | [monitor] control thread has ended
[2026-04-14 01:39:31] 2026-04-13 23:39:31,104 [wrapper] ==== pilot stdout END ====
[2026-04-14 01:39:31] 2026-04-13 23:39:31,106 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 01:39:31] 2026-04-13 23:39:31,109 [wrapper] pilotpid: 3353415
[2026-04-14 01:39:31] 2026-04-13 23:39:31,111 [wrapper] Pilot exit status: 0
[2026-04-14 01:39:31] 2026-04-13 23:39:31,118 [wrapper] pandaids: 7089657890
[2026-04-14 01:39:31] 2026-04-13 23:39:31,137 [wrapper] cleanup supervisor_pilot 3366920 3353416
[2026-04-14 01:39:31] 2026-04-13 23:39:31,140 [wrapper] Test setup, not cleaning
[2026-04-14 01:39:31] 2026-04-13 23:39:31,142 [wrapper] apfmon messages muted
[2026-04-14 01:39:31] 2026-04-13 23:39:31,144 [wrapper] ==== wrapper stdout END ====
[2026-04-14 01:39:31] 2026-04-13 23:39:31,147 [wrapper] ==== wrapper stderr END ====
[2026-04-14 01:39:31]  *** Error codes and diagnostics ***
[2026-04-14 01:39:31]     "exeErrorCode": 0,
[2026-04-14 01:39:31]     "pilotErrorCode": 0,
[2026-04-14 01:39:31]  *** Listing of results directory ***
[2026-04-14 01:39:31] total 423692
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc    644190 Apr 13 18:26 pilot3.tar.gz
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc      5094 Apr 13 18:26 queuedata.json
[2026-04-14 01:39:31] -rwx------ 1 boinc boinc     36322 Apr 13 18:27 runpilot2-wrapper.sh
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc       100 Apr 13 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 01:39:31] -rwxr-xr-x 1 boinc boinc      7986 Apr 13 23:48 run_atlas
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc       105 Apr 13 23:48 job.xml
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc 227127741 Apr 13 23:48 EVNT.48629115._000661.pool.root.1
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc    656952 Apr 13 23:48 input.tar.gz
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc     15665 Apr 13 23:48 start_atlas.sh
[2026-04-14 01:39:31] drwxrwx--x 2 boinc boinc      4096 Apr 13 23:48 shared
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc         0 Apr 13 23:48 boinc_setup_complete
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc      6362 Apr 13 23:48 init_data.xml
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc         0 Apr 13 23:48 boinc_lockfile
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc      2629 Apr 13 23:48 pandaJob.out
[2026-04-14 01:39:31] -rw------- 1 boinc boinc    997488 Apr 13 23:49 agis_schedconf.cvmfs.json
[2026-04-14 01:39:31] -rw------- 1 boinc boinc   1511579 Apr 13 23:49 agis_ddmendpoints.agis.ALL.json
[2026-04-14 01:39:31] -rw------- 1 boinc boinc       425 Apr 13 23:49 workernode_map.json
[2026-04-14 01:39:31] drwx------ 5 boinc boinc      4096 Apr 13 23:49 pilot3
[2026-04-14 01:39:31] -rw------- 1 boinc boinc 200940673 Apr 14 01:38 HITS.49645815._016551.pool.root.1
[2026-04-14 01:39:31] -rw------- 1 boinc boinc        95 Apr 14 01:38 pilot_heartbeat.json
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc       487 Apr 14 01:38 boinc_task_state.xml
[2026-04-14 01:39:31] -rw------- 1 boinc boinc      1015 Apr 14 01:38 memory_monitor_summary.json
[2026-04-14 01:39:31] -rw------- 1 boinc boinc    243939 Apr 14 01:38 log.49645815._016551.job.log.tgz.1
[2026-04-14 01:39:31] -rw------- 1 boinc boinc      6316 Apr 14 01:38 heartbeat_new.json
[2026-04-14 01:39:31] -rw------- 1 boinc boinc      6207 Apr 14 01:38 heartbeat.json
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc        27 Apr 14 01:39 wrapper_checkpoint.txt
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc      8192 Apr 14 01:39 boinc_mmap_file
[2026-04-14 01:39:31] -rw------- 1 boinc boinc       747 Apr 14 01:39 pilotlog.txt
[2026-04-14 01:39:31] -rw------- 1 boinc boinc    630769 Apr 14 01:39 log.49645815._016551.job.log.1
[2026-04-14 01:39:31] -rw------- 1 boinc boinc       357 Apr 14 01:39 output.list
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc       410 Apr 14 01:39 runtime_log
[2026-04-14 01:39:31] -rw------- 1 boinc boinc    890880 Apr 14 01:39 result.tar.gz
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc      8533 Apr 14 01:39 runtime_log.err
[2026-04-14 01:39:31] -rw------- 1 boinc boinc       661 Apr 14 01:39 1966955ec341.diag
[2026-04-14 01:39:31] -rw-r--r-- 1 boinc boinc     10491 Apr 14 01:39 stderr.txt
[2026-04-14 01:39:31] HITS file was successfully produced:
[2026-04-14 01:39:31] -rw------- 1 boinc boinc 200940673 Apr 14 01:38 shared/HITS.pool.root.1
[2026-04-14 01:39:31]  *** Contents of shared directory: ***
[2026-04-14 01:39:31] total 419580
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc 227127741 Apr 13 23:48 ATLAS.root_0
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc    656952 Apr 13 23:48 input.tar.gz
[2026-04-14 01:39:31] -rw-r--r-- 2 boinc boinc     15665 Apr 13 23:48 start_atlas.sh
[2026-04-14 01:39:31] -rw------- 1 boinc boinc 200940673 Apr 14 01:38 HITS.pool.root.1
[2026-04-14 01:39:31] -rw------- 1 boinc boinc    890880 Apr 14 01:39 result.tar.gz
01:39:32 (3349368): run_atlas exited; CPU time 18830.019079
01:39:32 (3349368): called boinc_finish(0)

</stderr_txt>
]]>

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