Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:15:59 (2939433): wrapper (7.7.26015): starting
08:15:59 (2939433): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 08:15:59] Arguments: --nthreads 3
[2026-04-14 08:15:59] Threads: 3
[2026-04-14 08:15:59] Checking for CVMFS
[2026-04-14 08:15:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 08:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 08:16:00] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 08:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 08:16:00] 2.9.2.0 2104384 5305 84732 158441 3 50 25682165 36864000 0 130560 0 3189045 99.988 198031 13469 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 08:16:00] CVMFS is ok
[2026-04-14 08:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 08:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 08:16:00] Further information can be found at the LHC@home message board.
[2026-04-14 08:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 08:16:00] Checking for apptainer binary...
[2026-04-14 08:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 08:16:00] Running /usr/bin/apptainer --version
[2026-04-14 08:16:00] apptainer version 1.4.1-1.1
[2026-04-14 08:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 08:16:00] thA385
[2026-04-14 08:16:00] apptainer works
[2026-04-14 08:16:00] Set ATHENA_PROC_NUMBER=3
[2026-04-14 08:16:00] Set ATHENA_CORE_NUMBER=3
[2026-04-14 08:16:00] Starting ATLAS job with PandaID=7089567520
[2026-04-14 08:16:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 10:03:24]  *** The last 200 lines of the pilot log: ***
[2026-04-14 10:03:24] 2026-04-14 08:02:41,707 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 10:03:24] 2026-04-14 08:02:41,707 | INFO     | job 7089567520 has completed (purged errors)
[2026-04-14 10:03:24] 2026-04-14 08:02:41,707 | INFO     | overall cleanup function is called
[2026-04-14 10:03:24] 2026-04-14 08:02:42,663 | WARNING  | process 2947910 can no longer be monitored (due to stat problems) - aborting
[2026-04-14 10:03:24] 2026-04-14 08:02:42,693 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-14 10:03:24] 2026-04-14 08:02:42,713 | INFO     | --- collectZombieJob: --- 10, [2947910]
[2026-04-14 10:03:24] 2026-04-14 08:02:42,713 | INFO     | zombie collector waiting for pid 2947910
[2026-04-14 10:03:24] 2026-04-14 08:02:42,713 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 10:03:24] 2026-04-14 08:02:42,714 | INFO     | collected zombie processes
[2026-04-14 10:03:24] 2026-04-14 08:02:42,714 | INFO     | will attempt to kill all subprocesses of pid=2947910
[2026-04-14 10:03:24] 2026-04-14 08:02:42,761 | INFO     | number of running child processes to parent process 2947910: 1
[2026-04-14 10:03:24] 2026-04-14 08:02:42,761 | INFO     | maximum number of monitored processes: 6
[2026-04-14 10:03:24] 2026-04-14 08:02:42,761 | INFO     | aborting job monitoring since job object (job id=7089567520) has expired
[2026-04-14 10:03:24] 2026-04-14 08:02:42,782 | INFO     | process IDs to be killed: [2947910] (in reverse order)
[2026-04-14 10:03:24] 2026-04-14 08:02:42,808 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 10:03:24] 2026-04-14 08:02:42,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 10:03:24] 2026-04-14 08:02:42,810 | INFO     | did not find any defunct processes belonging to 2947910
[2026-04-14 10:03:24] 2026-04-14 08:02:42,811 | INFO     | did not find any defunct processes belonging to 2947910
[2026-04-14 10:03:24] 2026-04-14 08:02:42,811 | INFO     | Ready for new job
[2026-04-14 10:03:24] 2026-04-14 08:02:42,811 | INFO     | **************************************
[2026-04-14 10:03:24] 2026-04-14 08:02:42,812 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 10:03:24] 2026-04-14 08:02:42,812 | INFO     | **************************************
[2026-04-14 10:03:24] 2026-04-14 08:02:42,812 | INFO     | 
[2026-04-14 10:03:24] 2026-04-14 08:02:42,812 | INFO     | architecture information:
[2026-04-14 10:03:24] 2026-04-14 08:02:42,812 | INFO     | executing command: cat /etc/os-release
[2026-04-14 10:03:24] 2026-04-14 08:02:42,822 | INFO     | cat /etc/os-release:
[2026-04-14 10:03:24] NAME="CentOS Linux"
[2026-04-14 10:03:24] VERSION="7 (Core)"
[2026-04-14 10:03:24] ID="centos"
[2026-04-14 10:03:24] ID_LIKE="rhel fedora"
[2026-04-14 10:03:24] VERSION_ID="7"
[2026-04-14 10:03:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 10:03:24] ANSI_COLOR="0;31"
[2026-04-14 10:03:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 10:03:24] HOME_URL="https://www.centos.org/"
[2026-04-14 10:03:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 10:03:24] 
[2026-04-14 10:03:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 10:03:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 10:03:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 10:03:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 10:03:24] 
[2026-04-14 10:03:24] 2026-04-14 08:02:42,822 | INFO     | **************************************
[2026-04-14 10:03:24] 2026-04-14 08:02:43,325 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 10:03:24] 2026-04-14 08:02:43,337 | INFO     | sufficient remaining disk space (379485945856 B)
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | INFO     | update_server=False
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 10:03:24] 2026-04-14 08:02:43,338 | INFO     | will abort loop
[2026-04-14 10:03:24] 2026-04-14 08:02:44,234 | INFO     | all data control threads have been joined
[2026-04-14 10:03:24] 2026-04-14 08:02:44,343 | INFO     | [job] job monitor thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,344 | INFO     | [job] retrieve thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 10:03:24] 2026-04-14 08:02:44,386 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,516 | INFO     | all payload control threads have been joined
[2026-04-14 10:03:24] 2026-04-14 08:02:44,613 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,809 | INFO     | [payload] validate_post thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,843 | INFO     | [payload] failed_post thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,849 | INFO     | [job] validate thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:44,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 10:03:24] 2026-04-14 08:02:45,033 | INFO     | all job control threads have been joined
[2026-04-14 10:03:24] 2026-04-14 08:02:45,240 | INFO     | [data] control thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:45,349 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:45,521 | INFO     | [payload] control thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:45,671 | INFO     | [data] copytool_in thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:46,039 | INFO     | [job] control thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:46,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 10:03:24] 2026-04-14 08:02:46,371 | INFO     | [data] copytool_out thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:47,254 | INFO     | [job] queue monitor thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:48,895 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:02:53,805 | INFO     | job.realtimelogging is not enabled
[2026-04-14 10:03:24] 2026-04-14 08:02:54,811 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 10:03:24] 2026-04-14 08:03:12,566 | INFO     | 6395s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-14 10:03:24] 2026-04-14 08:03:13,631 | INFO     | PID=2943474 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 10:03:24] 2026-04-14 08:03:13,631 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 10:03:24] 2026-04-14 08:03:13,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 10:03:24] 2026-04-14 08:03:13,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 10:03:24] 2026-04-14 08:03:18,403 | INFO     | [monitor] cgroup control has ended
[2026-04-14 10:03:24] 2026-04-14 08:03:19,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453924116288)>', '<ExcThread(monitor, started 140453206812416)>']
[2026-04-14 10:03:24] 2026-04-14 08:03:19,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 10:03:24] 2026-04-14 08:03:19,662 | INFO     | [monitor] control thread has ended
[2026-04-14 10:03:24] 2026-04-14 08:03:24,434 | INFO     | all workflow threads have been joined
[2026-04-14 10:03:24] 2026-04-14 08:03:24,434 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 10:03:24] 2026-04-14 08:03:24,435 | INFO     | traces error code: 0
[2026-04-14 10:03:24] 2026-04-14 08:03:24,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 10:03:24] 2026-04-14 08:03:24,483 [wrapper] ==== pilot stdout END ====
[2026-04-14 10:03:24] 2026-04-14 08:03:24,486 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 10:03:24] 2026-04-14 08:03:24,488 [wrapper] pilotpid: 2943474
[2026-04-14 10:03:24] 2026-04-14 08:03:24,490 [wrapper] Pilot exit status: 0
[2026-04-14 10:03:24] 2026-04-14 08:03:24,498 [wrapper] pandaids: 7089567520
[2026-04-14 10:03:24] 2026-04-14 08:03:24,516 [wrapper] cleanup supervisor_pilot 2955902 2943475
[2026-04-14 10:03:24] 2026-04-14 08:03:24,519 [wrapper] Test setup, not cleaning
[2026-04-14 10:03:24] 2026-04-14 08:03:24,521 [wrapper] apfmon messages muted
[2026-04-14 10:03:24] 2026-04-14 08:03:24,524 [wrapper] ==== wrapper stdout END ====
[2026-04-14 10:03:24] 2026-04-14 08:03:24,526 [wrapper] ==== wrapper stderr END ====
[2026-04-14 10:03:24]  *** Error codes and diagnostics ***
[2026-04-14 10:03:24]     "exeErrorCode": 0,
[2026-04-14 10:03:24]     "pilotErrorCode": 0,
[2026-04-14 10:03:24]  *** Listing of results directory ***
[2026-04-14 10:03:24] total 415800
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc    644190 Apr 13 16:51 pilot3.tar.gz
[2026-04-14 10:03:24] -rwx------ 1 boinc boinc     36322 Apr 13 16:55 runpilot2-wrapper.sh
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc      5094 Apr 13 17:03 queuedata.json
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc       100 Apr 14 08:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 10:03:24] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 08:15 run_atlas
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc       105 Apr 14 08:15 job.xml
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc 223260951 Apr 14 08:15 EVNT.48629115._000637.pool.root.1
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc    656943 Apr 14 08:15 input.tar.gz
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc     15665 Apr 14 08:15 start_atlas.sh
[2026-04-14 10:03:24] drwxrwx--x 2 boinc boinc      4096 Apr 14 08:15 shared
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc         0 Apr 14 08:15 boinc_setup_complete
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc      6361 Apr 14 08:15 init_data.xml
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc         0 Apr 14 08:15 boinc_lockfile
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc      2629 Apr 14 08:16 pandaJob.out
[2026-04-14 10:03:24] -rw------- 1 boinc boinc    997512 Apr 14 08:16 agis_schedconf.cvmfs.json
[2026-04-14 10:03:24] -rw------- 1 boinc boinc   1511579 Apr 14 08:16 agis_ddmendpoints.agis.ALL.json
[2026-04-14 10:03:24] -rw------- 1 boinc boinc       422 Apr 14 08:16 workernode_map.json
[2026-04-14 10:03:24] drwx------ 5 boinc boinc      4096 Apr 14 08:16 pilot3
[2026-04-14 10:03:24] -rw------- 1 boinc boinc 196761951 Apr 14 10:02 HITS.49645815._015951.pool.root.1
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc       487 Apr 14 10:02 boinc_task_state.xml
[2026-04-14 10:03:24] -rw------- 1 boinc boinc      1019 Apr 14 10:02 memory_monitor_summary.json
[2026-04-14 10:03:24] -rw------- 1 boinc boinc    243370 Apr 14 10:02 log.49645815._015951.job.log.tgz.1
[2026-04-14 10:03:24] -rw------- 1 boinc boinc        95 Apr 14 10:02 pilot_heartbeat.json
[2026-04-14 10:03:24] -rw------- 1 boinc boinc      6320 Apr 14 10:02 heartbeat_new.json
[2026-04-14 10:03:24] -rw------- 1 boinc boinc      6211 Apr 14 10:02 heartbeat.json
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc      8192 Apr 14 10:03 boinc_mmap_file
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc        27 Apr 14 10:03 wrapper_checkpoint.txt
[2026-04-14 10:03:24] -rw------- 1 boinc boinc      4936 Apr 14 10:03 pilotlog.txt
[2026-04-14 10:03:24] -rw------- 1 boinc boinc    613870 Apr 14 10:03 log.49645815._015951.job.log.1
[2026-04-14 10:03:24] -rw------- 1 boinc boinc       357 Apr 14 10:03 output.list
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc       410 Apr 14 10:03 runtime_log
[2026-04-14 10:03:24] -rw------- 1 boinc boinc    870400 Apr 14 10:03 result.tar.gz
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc      8518 Apr 14 10:03 runtime_log.err
[2026-04-14 10:03:24] -rw------- 1 boinc boinc       658 Apr 14 10:03 03c6fe562064.diag
[2026-04-14 10:03:24] -rw-r--r-- 1 boinc boinc     11553 Apr 14 10:03 stderr.txt
[2026-04-14 10:03:24] HITS file was successfully produced:
[2026-04-14 10:03:24] -rw------- 1 boinc boinc 196761951 Apr 14 10:02 shared/HITS.pool.root.1
[2026-04-14 10:03:24]  *** Contents of shared directory: ***
[2026-04-14 10:03:24] total 411700
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc 223260951 Apr 14 08:15 ATLAS.root_0
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc    656943 Apr 14 08:15 input.tar.gz
[2026-04-14 10:03:24] -rw-r--r-- 2 boinc boinc     15665 Apr 14 08:15 start_atlas.sh
[2026-04-14 10:03:24] -rw------- 1 boinc boinc 196761951 Apr 14 10:02 HITS.pool.root.1
[2026-04-14 10:03:24] -rw------- 1 boinc boinc    870400 Apr 14 10:03 result.tar.gz
10:03:25 (2939433): run_atlas exited; CPU time 18185.702873
10:03:25 (2939433): called boinc_finish(0)

</stderr_txt>
]]>

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